Wall clock time and date at job start Mon Mar 30 2020 04:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47079 * 2 1 4 4 C 1.50707 * 109.47262 * 240.00381 * 2 1 3 5 5 H 1.07995 * 120.00067 * 275.10548 * 4 2 1 6 6 C 1.37878 * 119.99530 * 95.10227 * 4 2 1 7 7 N 1.31514 * 119.99650 * 184.90860 * 6 4 2 8 8 Si 1.86797 * 120.00367 * 4.91309 * 6 4 2 9 9 H 1.48496 * 109.47229 * 84.81738 * 8 6 4 10 10 H 1.48500 * 109.47063 * 204.81155 * 8 6 4 11 11 H 1.48498 * 109.47138 * 324.81300 * 8 6 4 12 12 C 1.50699 * 109.47316 * 120.00621 * 2 1 3 13 13 O 1.21279 * 120.00101 * 119.99965 * 12 2 1 14 14 N 1.34778 * 119.99837 * 299.99578 * 12 2 1 15 15 C 1.46494 * 119.99994 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.47441 * 325.00562 * 15 14 12 17 17 C 1.53000 * 109.47071 * 85.00732 * 15 14 12 18 18 C 1.53004 * 109.47379 * 205.00564 * 15 14 12 19 19 C 1.50699 * 109.47121 * 64.99614 * 18 15 14 20 20 C 1.38650 * 120.79320 * 269.72305 * 19 18 15 21 21 C 1.38206 * 119.15827 * 179.80156 * 20 19 18 22 22 N 1.31859 * 120.76908 * 0.48472 * 21 20 19 23 23 C 1.31879 * 121.72470 * 359.74064 * 22 21 20 24 24 C 1.38200 * 120.76341 * 0.02884 * 23 22 21 25 25 H 1.08999 * 109.47348 * 295.08516 * 1 2 3 26 26 H 1.09003 * 109.47153 * 55.08428 * 1 2 3 27 27 H 1.09007 * 109.47315 * 175.08061 * 1 2 3 28 28 H 0.97002 * 120.00583 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99912 * 0.02562 * 14 12 2 30 30 H 1.09004 * 109.46626 * 299.99491 * 17 15 14 31 31 H 1.09005 * 109.47253 * 180.02562 * 17 15 14 32 32 H 1.08994 * 109.47467 * 59.99958 * 17 15 14 33 33 H 1.08998 * 109.47422 * 185.00192 * 18 15 14 34 34 H 1.09007 * 109.46998 * 305.00046 * 18 15 14 35 35 H 1.07998 * 120.41435 * 359.97438 * 20 19 18 36 36 H 1.08000 * 119.61305 * 180.20669 * 21 20 19 37 37 H 1.07997 * 119.61640 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.42047 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1338 -1.7855 -1.2298 6 6 2.3622 0.0125 -2.3573 7 7 2.7081 -0.6125 -3.4616 8 14 2.3181 1.8795 -2.3155 9 1 3.6037 2.3931 -1.7785 10 1 2.1127 2.4007 -3.6908 11 1 1.2027 2.3289 -1.4442 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1946 -0.9411 3.6506 16 1 2.2310 -2.0139 3.4611 17 6 3.5973 -0.4362 3.9947 18 6 1.2505 -0.6619 4.8218 19 6 -0.0993 -1.2672 4.5343 20 6 -1.0814 -0.5356 3.8843 21 6 -2.3059 -1.1255 3.6341 22 7 -2.5479 -2.3647 4.0142 23 6 -1.6393 -3.0886 4.6384 24 6 -0.3905 -2.5672 4.9187 25 1 -0.3634 0.4357 0.9307 26 1 -0.3633 0.5882 -0.8427 27 1 -0.3634 -1.0239 -0.0881 28 1 2.9406 -0.1040 -4.2543 29 1 1.1488 0.5384 2.5436 30 1 4.2699 -0.6353 3.1604 31 1 3.9606 -0.9507 4.8844 32 1 3.5611 0.6365 4.1843 33 1 1.6598 -1.1017 5.7312 34 1 1.1450 0.4149 4.9546 35 1 -0.8909 0.4815 3.5750 36 1 -3.0751 -0.5635 3.1253 37 1 -1.8741 -4.1001 4.9349 38 1 0.3493 -3.1647 5.4306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597347170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:38 Heat of formation + Delta-G solvation = -18.691080 kcal Electronic energy + Delta-G solvation = -19832.747083 eV Core-core repulsion = 16867.574517 eV Total energy + Delta-G solvation = -2965.172567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.31003 -38.99640 -36.10384 -33.63959 -32.96319 -31.53736 -31.21760 -30.05993 -27.17718 -25.24479 -23.55055 -23.31518 -22.16760 -20.65789 -19.38082 -17.04127 -16.79405 -16.45028 -16.06966 -15.60746 -15.51851 -14.38055 -14.14715 -13.94264 -13.73681 -13.56041 -13.32802 -12.91179 -12.47053 -12.43901 -12.23909 -12.07047 -11.63848 -11.53158 -11.38071 -11.11427 -10.98549 -10.75588 -10.24408 -9.81989 -9.55210 -9.50350 -9.19061 -9.15359 -8.67124 -8.56347 -8.47259 -6.05730 -4.04763 1.11382 1.21580 3.23909 3.29861 3.33268 3.65819 3.76409 3.79692 4.38482 4.42083 4.49868 4.65902 4.88472 5.02650 5.09392 5.21655 5.25398 5.33691 5.49736 5.57744 5.66750 5.72243 5.75286 5.89802 5.95813 6.14031 6.16837 6.29433 6.34747 6.40451 6.54104 6.67170 6.83528 7.04549 7.19214 7.56799 7.95247 8.17164 8.55972 9.10114 9.19136 9.53930 11.07720 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.005840 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.914617 B = 4793.714509 C = 5332.146845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.005 4.005 3 H 0.053 0.947 4 C -0.494 4.494 5 H 0.085 0.915 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.265 1.265 12 C 0.521 3.479 13 O -0.529 6.529 14 N -0.744 5.744 15 C 0.147 3.853 16 H 0.085 0.915 17 C -0.162 4.162 18 C -0.091 4.091 19 C -0.031 4.031 20 C -0.163 4.163 21 C 0.102 3.898 22 N -0.491 5.491 23 C 0.098 3.902 24 C -0.172 4.172 25 H 0.025 0.975 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.264 0.736 29 H 0.391 0.609 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 3.157 19.275 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 H 0.071 0.929 4 C -0.532 4.532 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.190 1.190 12 C 0.309 3.691 13 O -0.403 6.403 14 N -0.398 5.398 15 C 0.041 3.959 16 H 0.104 0.896 17 C -0.221 4.221 18 C -0.128 4.128 19 C -0.040 4.040 20 C -0.183 4.183 21 C -0.055 4.055 22 N -0.200 5.200 23 C -0.059 4.059 24 C -0.191 4.191 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.224 0.776 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.373 2.063 18.789 19.947 hybrid contribution 0.665 1.785 0.069 1.906 sum -5.709 3.848 18.858 20.075 Atomic orbital electron populations 1.21928 0.96841 1.01273 0.98862 1.19337 0.93993 0.96869 0.92444 0.92935 1.20745 1.42865 0.96148 0.93418 0.89717 1.25032 0.94725 0.97965 0.95350 1.69885 1.46102 1.35649 1.01673 0.86958 0.78914 0.86802 0.77443 1.20173 1.21272 1.18978 1.21724 0.78890 0.84456 0.83998 1.90575 1.36974 1.26294 1.86488 1.46419 1.55459 1.32424 1.05544 1.20750 0.92129 0.98715 0.84270 0.89646 1.22186 0.96959 1.00983 1.01947 1.21009 0.91373 1.01496 0.98964 1.20230 0.95357 0.93955 0.94420 1.22009 0.94523 1.01510 1.00279 1.22734 0.95828 0.91183 0.95738 1.67657 1.34822 1.06952 1.10584 1.22712 0.89528 0.99404 0.94211 1.22023 0.98620 0.95869 1.02626 0.95650 0.92794 0.93067 0.92573 0.77572 0.91476 0.92188 0.92641 0.89318 0.90078 0.85045 0.82871 0.83008 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.12 37.15 0.34 -2.27 16 2 C 0.00 -0.11 2.30 -92.92 -0.21 -0.32 16 3 H 0.05 1.18 5.29 -51.93 -0.27 0.90 16 4 C -0.49 -14.25 8.36 -34.44 -0.29 -14.54 16 5 H 0.08 2.80 7.61 -52.49 -0.40 2.40 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 8 Si 0.87 20.93 26.99 -169.99 -4.59 16.34 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.26 -5.83 6.82 56.52 0.39 -5.45 16 12 C 0.52 11.31 7.11 -10.99 -0.08 11.23 16 13 O -0.53 -13.73 15.43 5.56 0.09 -13.65 16 14 N -0.74 -11.68 4.42 -53.81 -0.24 -11.91 16 15 C 0.15 1.94 2.56 -67.93 -0.17 1.76 16 16 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 17 C -0.16 -1.98 9.48 37.16 0.35 -1.63 16 18 C -0.09 -0.86 4.94 -27.88 -0.14 -0.99 16 19 C -0.03 -0.35 4.97 -104.32 -0.52 -0.87 16 20 C -0.16 -1.82 9.27 -39.44 -0.37 -2.18 16 21 C 0.10 1.23 11.18 -17.55 -0.20 1.03 16 22 N -0.49 -6.61 10.36 -13.25 -0.14 -6.75 16 23 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 24 C -0.17 -1.87 9.82 -39.44 -0.39 -2.26 16 25 H 0.02 0.39 7.43 -51.93 -0.39 0.01 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.39 5.10 7.31 -40.82 -0.30 4.80 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.13 1.20 7.68 -52.49 -0.40 0.80 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 320.25 15.07 4.83 4.83 Total: -1.00 -34.91 320.25 -6.77 -41.68 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.53 Total: 4.56 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.96 Total: -8.13 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.40 Total: -45.62 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.59 Total: 16.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.91 -6.77 -41.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597347170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.985 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds