Wall clock time and date at job start Mon Mar 30 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47079 * 2 1 4 4 C 1.50707 * 109.47262 * 240.00381 * 2 1 3 5 5 H 1.07995 * 120.00067 * 275.10548 * 4 2 1 6 6 C 1.37878 * 119.99530 * 95.10227 * 4 2 1 7 7 N 1.31514 * 119.99650 * 184.90860 * 6 4 2 8 8 Si 1.86797 * 120.00367 * 4.91309 * 6 4 2 9 9 H 1.48496 * 109.47229 * 84.81738 * 8 6 4 10 10 H 1.48500 * 109.47063 * 204.81155 * 8 6 4 11 11 H 1.48498 * 109.47138 * 324.81300 * 8 6 4 12 12 C 1.50699 * 109.47316 * 120.00621 * 2 1 3 13 13 O 1.21279 * 120.00101 * 119.99965 * 12 2 1 14 14 N 1.34778 * 119.99837 * 299.99578 * 12 2 1 15 15 C 1.46494 * 119.99994 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.47441 * 325.00562 * 15 14 12 17 17 C 1.53000 * 109.47071 * 85.00732 * 15 14 12 18 18 C 1.53004 * 109.47379 * 205.00564 * 15 14 12 19 19 C 1.50699 * 109.47121 * 64.99614 * 18 15 14 20 20 C 1.38650 * 120.79320 * 269.72305 * 19 18 15 21 21 C 1.38206 * 119.15827 * 179.80156 * 20 19 18 22 22 N 1.31859 * 120.76908 * 0.48472 * 21 20 19 23 23 C 1.31879 * 121.72470 * 359.74064 * 22 21 20 24 24 C 1.38200 * 120.76341 * 0.02884 * 23 22 21 25 25 H 1.08999 * 109.47348 * 295.08516 * 1 2 3 26 26 H 1.09003 * 109.47153 * 55.08428 * 1 2 3 27 27 H 1.09007 * 109.47315 * 175.08061 * 1 2 3 28 28 H 0.97002 * 120.00583 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99912 * 0.02562 * 14 12 2 30 30 H 1.09004 * 109.46626 * 299.99491 * 17 15 14 31 31 H 1.09005 * 109.47253 * 180.02562 * 17 15 14 32 32 H 1.08994 * 109.47467 * 59.99958 * 17 15 14 33 33 H 1.08998 * 109.47422 * 185.00192 * 18 15 14 34 34 H 1.09007 * 109.46998 * 305.00046 * 18 15 14 35 35 H 1.07998 * 120.41435 * 359.97438 * 20 19 18 36 36 H 1.08000 * 119.61305 * 180.20669 * 21 20 19 37 37 H 1.07997 * 119.61640 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.42047 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1338 -1.7855 -1.2298 6 6 2.3622 0.0125 -2.3573 7 7 2.7081 -0.6125 -3.4616 8 14 2.3181 1.8795 -2.3155 9 1 3.6037 2.3931 -1.7785 10 1 2.1127 2.4007 -3.6908 11 1 1.2027 2.3289 -1.4442 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1946 -0.9411 3.6506 16 1 2.2310 -2.0139 3.4611 17 6 3.5973 -0.4362 3.9947 18 6 1.2505 -0.6619 4.8218 19 6 -0.0993 -1.2672 4.5343 20 6 -1.0814 -0.5356 3.8843 21 6 -2.3059 -1.1255 3.6341 22 7 -2.5479 -2.3647 4.0142 23 6 -1.6393 -3.0886 4.6384 24 6 -0.3905 -2.5672 4.9187 25 1 -0.3634 0.4357 0.9307 26 1 -0.3633 0.5882 -0.8427 27 1 -0.3634 -1.0239 -0.0881 28 1 2.9406 -0.1040 -4.2543 29 1 1.1488 0.5384 2.5436 30 1 4.2699 -0.6353 3.1604 31 1 3.9606 -0.9507 4.8844 32 1 3.5611 0.6365 4.1843 33 1 1.6598 -1.1017 5.7312 34 1 1.1450 0.4149 4.9546 35 1 -0.8909 0.4815 3.5750 36 1 -3.0751 -0.5635 3.1253 37 1 -1.8741 -4.1001 4.9349 38 1 0.3493 -3.1647 5.4306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597347170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:37 Heat of formation + Delta-G solvation = -43.857304 kcal Electronic energy + Delta-G solvation = -19833.838373 eV Core-core repulsion = 16867.574517 eV Total energy + Delta-G solvation = -2966.263856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25191 -40.48563 -37.34021 -35.61971 -34.14959 -33.34595 -32.05971 -31.38896 -28.03331 -27.23287 -24.91726 -24.33506 -23.23662 -21.80492 -21.02227 -19.11573 -17.89304 -17.47203 -17.39576 -16.85960 -16.45633 -16.16660 -15.67739 -15.15669 -14.78948 -14.66543 -14.52497 -14.43490 -14.09855 -13.79477 -13.25427 -13.14887 -13.07073 -12.92040 -12.64759 -12.58108 -12.30016 -12.16618 -11.92850 -11.75640 -11.25675 -10.75264 -10.48056 -10.38097 -10.33731 -10.02939 -9.88904 -8.27014 -6.33710 0.28336 0.36823 1.35192 1.39219 1.49334 1.95898 2.35779 2.42653 2.92054 3.10242 3.62209 3.70028 3.90047 3.95571 4.23263 4.28055 4.32372 4.35087 4.39811 4.42964 4.66760 4.72474 4.75133 4.82958 4.85838 4.92643 4.96883 5.07319 5.12832 5.19734 5.35187 5.43666 5.50818 5.59249 5.74109 5.87211 6.26405 6.68423 6.89566 7.10462 7.28024 7.59906 8.91364 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.005840 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.914617 B = 4793.714509 C = 5332.146845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.009 4.009 3 H 0.073 0.927 4 C -0.507 4.507 5 H 0.017 0.983 6 C 0.003 3.997 7 N -0.954 5.954 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.286 1.286 11 H -0.220 1.220 12 C 0.520 3.480 13 O -0.587 6.587 14 N -0.718 5.718 15 C 0.144 3.856 16 H 0.054 0.946 17 C -0.158 4.158 18 C -0.077 4.077 19 C -0.044 4.044 20 C -0.168 4.168 21 C 0.083 3.917 22 N -0.523 5.523 23 C 0.080 3.920 24 C -0.178 4.178 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.267 0.733 29 H 0.410 0.590 30 H 0.025 0.975 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 6.631 22.122 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.031 4.031 3 H 0.090 0.910 4 C -0.545 4.545 5 H 0.035 0.965 6 C -0.193 4.193 7 N -0.594 5.594 8 Si 0.770 3.230 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.143 1.143 12 C 0.308 3.692 13 O -0.465 6.465 14 N -0.372 5.372 15 C 0.040 3.960 16 H 0.072 0.928 17 C -0.216 4.216 18 C -0.114 4.114 19 C -0.052 4.052 20 C -0.187 4.187 21 C -0.074 4.074 22 N -0.232 5.232 23 C -0.077 4.077 24 C -0.197 4.197 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.246 0.754 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.175 0.825 36 H 0.187 0.813 37 H 0.185 0.815 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.240 5.565 21.712 23.554 hybrid contribution 0.924 0.549 -0.768 1.321 sum -6.316 6.114 20.944 22.714 Atomic orbital electron populations 1.21791 0.93980 1.00557 1.01760 1.19324 0.96081 0.96991 0.90716 0.90950 1.20893 1.43462 0.93579 0.96588 0.96503 1.26135 0.93966 1.04885 0.94335 1.70088 1.48011 1.38469 1.02833 0.85733 0.80662 0.78189 0.78378 1.19338 1.21226 1.14263 1.21403 0.78439 0.83730 0.85598 1.90564 1.39705 1.28809 1.87463 1.46082 1.54226 1.32404 1.04510 1.20920 0.94041 0.96755 0.84324 0.92811 1.22140 0.95144 1.02816 1.01489 1.20976 0.89247 1.03427 0.97728 1.20535 0.96210 0.94095 0.94407 1.22321 0.94046 1.02598 0.99770 1.23127 0.97016 0.91098 0.96122 1.67643 1.35973 1.08006 1.11620 1.23088 0.89956 1.00246 0.94362 1.22331 0.98673 0.96356 1.02384 0.90398 0.92525 0.95318 0.92467 0.75350 0.95539 0.89393 0.90320 0.86626 0.87228 0.82526 0.81341 0.81488 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 9.12 71.98 0.66 -3.93 16 2 C -0.01 -0.42 2.30 -12.29 -0.03 -0.45 16 3 H 0.07 2.98 5.29 -2.39 -0.01 2.97 16 4 C -0.51 -30.47 8.36 25.60 0.21 -30.26 16 5 H 0.02 1.19 7.61 -2.91 -0.02 1.17 16 6 C 0.00 0.17 5.47 84.65 0.46 0.63 16 7 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 8 Si 0.95 42.29 26.99 68.60 1.85 44.14 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.22 -8.20 6.82 99.48 0.68 -7.53 16 12 C 0.52 22.41 7.11 87.66 0.62 23.04 16 13 O -0.59 -31.83 15.43 -3.03 -0.05 -31.88 16 14 N -0.72 -20.56 4.42 -442.54 -1.95 -22.52 16 15 C 0.14 3.43 2.56 44.99 0.12 3.55 16 16 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 17 C -0.16 -3.42 9.48 71.98 0.68 -2.73 16 18 C -0.08 -1.09 4.94 29.85 0.15 -0.95 16 19 C -0.04 -0.84 4.97 -19.67 -0.10 -0.93 16 20 C -0.17 -3.15 9.27 22.36 0.21 -2.95 16 21 C 0.08 1.83 11.18 84.68 0.95 2.77 16 22 N -0.52 -13.62 10.36 -195.85 -2.03 -15.65 16 23 C 0.08 1.79 11.18 84.68 0.95 2.74 16 24 C -0.18 -3.53 9.82 22.36 0.22 -3.31 16 25 H 0.08 2.07 7.43 -2.39 -0.02 2.05 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 29 H 0.41 8.64 7.31 -92.71 -0.68 7.97 16 30 H 0.03 0.78 8.14 -2.38 -0.02 0.77 16 31 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.12 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.11 1.03 8.10 -2.38 -0.02 1.01 16 35 H 0.16 2.02 7.68 -2.91 -0.02 1.99 16 36 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -84.22 320.25 3.56 -80.66 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.34 Total: 19.52 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 5.10 Total: -12.78 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -3.68 Total: -99.66 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.05 Total: -31.88 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.85 Total: 44.14 kcal Total: -84.22 3.56 -80.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597347170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.805 kcal (2) G-P(sol) polarization free energy of solvation -84.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds