Wall clock time and date at job start Mon Mar 30 2020 04:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47076 * 2 1 4 4 C 1.46501 * 119.99860 * 96.01166 * 3 2 1 5 5 C 1.50704 * 109.46868 * 275.90156 * 4 3 2 6 6 C 1.38227 * 119.62044 * 94.97715 * 5 4 3 7 7 C 1.38628 * 119.15956 * 179.79039 * 6 5 4 8 8 C 1.38674 * 118.42148 * 0.47329 * 7 6 5 9 9 C 1.38179 * 119.16007 * 359.50637 * 8 7 6 10 10 N 1.31853 * 119.61499 * 275.00107 * 5 4 3 11 11 C 1.34772 * 120.00150 * 276.00511 * 3 2 1 12 12 O 1.21285 * 119.99763 * 4.95360 * 11 3 2 13 13 C 1.50700 * 120.00087 * 184.94531 * 11 3 2 14 14 H 1.09001 * 109.47102 * 305.22771 * 13 11 3 15 15 C 1.52995 * 109.47314 * 65.22996 * 13 11 3 16 16 C 1.50702 * 109.47138 * 185.23375 * 13 11 3 17 17 H 1.07999 * 120.00042 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00023 * 179.97438 * 16 13 11 19 19 N 1.31511 * 119.99917 * 179.97438 * 18 16 13 20 20 Si 1.86804 * 119.99771 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.46935 * 89.99993 * 20 18 16 22 22 H 1.48503 * 109.46915 * 209.99484 * 20 18 16 23 23 H 1.48494 * 109.47159 * 329.99914 * 20 18 16 24 24 H 1.09005 * 109.46988 * 304.80175 * 1 2 3 25 25 H 1.08992 * 109.47479 * 64.80621 * 1 2 3 26 26 H 1.09002 * 109.47136 * 184.80491 * 1 2 3 27 27 H 1.09001 * 109.47093 * 239.99995 * 2 1 3 28 28 H 1.09005 * 109.47512 * 120.00609 * 2 1 3 29 29 H 1.08992 * 109.47370 * 155.90087 * 4 3 2 30 30 H 1.08997 * 109.46999 * 35.89770 * 4 3 2 31 31 H 1.08000 * 120.41586 * 0.02562 * 6 5 4 32 32 H 1.08002 * 120.78559 * 180.23195 * 7 6 5 33 33 H 1.07991 * 120.41673 * 179.78340 * 8 7 6 34 34 H 1.08004 * 119.61394 * 180.25100 * 9 8 7 35 35 H 1.08997 * 109.47469 * 193.17426 * 15 13 11 36 36 H 1.09002 * 109.47086 * 313.17373 * 15 13 11 37 37 H 1.08999 * 109.47142 * 73.17274 * 15 13 11 38 38 H 0.97001 * 119.99913 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3877 2.0275 1.2618 5 6 1.1542 2.5958 1.9150 6 6 0.4836 1.8544 2.8696 7 6 -0.6475 2.3882 3.4676 8 6 -1.0693 3.6493 3.0741 9 6 -0.3474 4.3314 2.1134 10 7 0.7270 3.7942 1.5690 11 6 2.1278 2.0573 -1.1607 12 8 1.7383 1.5554 -2.1939 13 6 2.7340 3.4369 -1.1749 14 1 2.2024 4.0746 -0.4685 15 6 4.2081 3.3505 -0.7746 16 6 2.6229 4.0202 -2.5600 17 1 2.1600 3.4489 -3.3510 18 6 3.1121 5.2833 -2.8174 19 7 3.0156 5.7921 -4.0263 20 14 3.9120 6.2718 -1.4490 21 1 5.3685 5.9843 -1.4170 22 1 3.6989 7.7207 -1.6953 23 1 3.3047 5.8963 -0.1470 24 1 -0.3633 0.5866 0.8439 25 1 -0.3634 0.4374 -0.9298 26 1 -0.3633 -1.0241 0.0861 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.0972 2.8310 1.0644 30 1 2.8451 1.2938 1.9255 31 1 0.8385 0.8734 3.1488 32 1 -1.1895 1.8334 4.2192 33 1 -1.9483 4.0944 3.5163 34 1 -0.6671 5.3157 1.8045 35 1 4.5848 4.3499 -0.5573 36 1 4.3077 2.7240 0.1118 37 1 4.7819 2.9159 -1.5931 38 1 3.3602 6.6806 -4.2074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597362189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:20 Heat of formation + Delta-G solvation = 13.697654 kcal Electronic energy + Delta-G solvation = -20445.553325 eV Core-core repulsion = 17481.785239 eV Total energy + Delta-G solvation = -2963.768086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35985 -39.02251 -35.41909 -33.95568 -32.54073 -31.91177 -31.29050 -29.87951 -26.47099 -25.04989 -23.92966 -23.41652 -22.15541 -21.35236 -18.49444 -16.97995 -16.75113 -16.25665 -15.90177 -15.61276 -15.24159 -14.52736 -14.36891 -13.70246 -13.52909 -13.48632 -13.09206 -13.05897 -12.70980 -12.41397 -12.18614 -11.82309 -11.68345 -11.45801 -11.28047 -10.91613 -10.67860 -10.39629 -10.18658 -9.86420 -9.52767 -9.36608 -9.01496 -8.91690 -8.54398 -8.45617 -8.22887 -5.93100 -3.91604 1.08120 1.30417 3.33714 3.43856 3.45598 3.47229 3.63903 4.01203 4.34965 4.51147 4.69099 4.84758 4.98696 5.10636 5.15312 5.34704 5.37997 5.45162 5.58586 5.62979 5.69649 5.73417 5.82869 5.88552 6.09001 6.13115 6.19031 6.26154 6.44775 6.44934 6.58622 6.69698 6.84406 7.09371 7.39844 7.68842 8.04373 8.12952 8.66724 9.15921 9.25576 9.67225 11.20175 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.007959 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.488350 B = 3517.282553 C = 4315.533465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.115 3.885 3 N -0.623 5.623 4 C 0.147 3.853 5 C 0.116 3.884 6 C -0.163 4.163 7 C -0.080 4.080 8 C -0.178 4.178 9 C 0.104 3.896 10 N -0.459 5.459 11 C 0.536 3.464 12 O -0.528 6.528 13 C -0.011 4.011 14 H 0.073 0.927 15 C -0.153 4.153 16 C -0.499 4.499 17 H 0.090 0.910 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.877 3.123 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.259 1.259 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 -8.214 18.960 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.359 5.359 4 C 0.022 3.978 5 C -0.024 4.024 6 C -0.184 4.184 7 C -0.106 4.106 8 C -0.198 4.198 9 C -0.054 4.054 10 N -0.168 5.168 11 C 0.327 3.673 12 O -0.401 6.401 13 C -0.032 4.032 14 H 0.090 0.910 15 C -0.210 4.210 16 C -0.538 4.538 17 H 0.108 0.892 18 C -0.130 4.130 19 N -0.540 5.540 20 Si 0.707 3.293 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.184 1.184 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.173 0.827 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.259 -7.872 17.590 19.736 hybrid contribution -0.209 0.213 1.463 1.493 sum -4.468 -7.659 19.053 21.016 Atomic orbital electron populations 1.22176 0.96692 1.01110 1.02740 1.21290 0.94136 0.83348 1.02013 1.48184 1.68018 1.13343 1.06326 1.20726 0.92772 0.98666 0.85610 1.21873 0.97160 0.90359 0.92960 1.21930 0.96937 1.00971 0.98558 1.21514 0.95599 0.95239 0.98263 1.22134 1.01571 0.96213 0.99907 1.22864 0.90505 0.99742 0.92245 1.67619 1.13498 1.11593 1.24110 1.21395 0.76529 0.88012 0.81329 1.90564 1.47860 1.69433 1.32274 1.19413 0.92615 0.90079 1.01116 0.90957 1.22332 0.98750 1.00201 0.99715 1.20950 1.38745 1.00709 0.93366 0.89224 1.24927 0.95733 0.97143 0.95184 1.69892 1.47097 1.16956 1.20019 0.87000 0.79748 0.78829 0.83734 1.20733 1.22458 1.18401 0.92898 0.91940 0.92491 0.90519 0.91400 0.86644 0.89550 0.85117 0.85181 0.85070 0.82728 0.93504 0.94159 0.92084 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.19 37.16 0.38 -2.01 16 2 C 0.12 1.66 6.07 -4.04 -0.02 1.64 16 3 N -0.62 -10.88 2.46 -175.06 -0.43 -11.31 16 4 C 0.15 2.13 4.99 -5.19 -0.03 2.10 16 5 C 0.12 1.69 5.96 -82.59 -0.49 1.19 16 6 C -0.16 -1.82 8.29 -39.44 -0.33 -2.15 16 7 C -0.08 -0.80 10.18 -39.28 -0.40 -1.20 16 8 C -0.18 -1.90 10.11 -39.44 -0.40 -2.29 16 9 C 0.10 1.42 11.18 -17.55 -0.20 1.22 16 10 N -0.46 -7.73 9.36 -9.47 -0.09 -7.82 16 11 C 0.54 12.40 6.92 -10.99 -0.08 12.32 16 12 O -0.53 -14.17 15.11 5.55 0.08 -14.09 16 13 C -0.01 -0.26 1.39 -92.92 -0.13 -0.39 16 14 H 0.07 1.79 5.86 -51.93 -0.30 1.49 16 15 C -0.15 -3.29 7.86 37.15 0.29 -2.99 16 16 C -0.50 -15.03 8.91 -34.44 -0.31 -15.34 16 17 H 0.09 3.07 7.01 -52.49 -0.37 2.70 16 18 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 19 N -0.90 -28.71 13.96 55.43 0.77 -27.94 16 20 Si 0.88 22.10 24.27 -169.99 -4.13 17.98 16 21 H -0.28 -6.82 7.00 56.52 0.40 -6.43 16 22 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.26 -6.16 6.48 56.52 0.37 -5.80 16 24 H 0.05 0.73 6.18 -51.93 -0.32 0.41 16 25 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.21 7.69 -51.93 -0.40 0.81 16 28 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 29 H 0.12 1.85 4.16 -51.93 -0.22 1.63 16 30 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.05 1.02 3.78 -51.93 -0.20 0.82 16 36 H 0.04 0.70 5.45 -51.93 -0.28 0.41 16 37 H 0.06 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -36.22 303.93 -6.04 -42.27 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.03 Total: 2.21 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.80 Total: -5.88 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.25 Total: -47.06 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.08 Total: -14.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.13 Total: 17.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.22 -6.04 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597362189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.963 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds