Wall clock time and date at job start Mon Mar 30 2020 04:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47076 * 2 1 4 4 C 1.46501 * 119.99860 * 96.01166 * 3 2 1 5 5 C 1.50704 * 109.46868 * 275.90156 * 4 3 2 6 6 C 1.38227 * 119.62044 * 94.97715 * 5 4 3 7 7 C 1.38628 * 119.15956 * 179.79039 * 6 5 4 8 8 C 1.38674 * 118.42148 * 0.47329 * 7 6 5 9 9 C 1.38179 * 119.16007 * 359.50637 * 8 7 6 10 10 N 1.31853 * 119.61499 * 275.00107 * 5 4 3 11 11 C 1.34772 * 120.00150 * 276.00511 * 3 2 1 12 12 O 1.21285 * 119.99763 * 4.95360 * 11 3 2 13 13 C 1.50700 * 120.00087 * 184.94531 * 11 3 2 14 14 H 1.09001 * 109.47102 * 305.22771 * 13 11 3 15 15 C 1.52995 * 109.47314 * 65.22996 * 13 11 3 16 16 C 1.50702 * 109.47138 * 185.23375 * 13 11 3 17 17 H 1.07999 * 120.00042 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00023 * 179.97438 * 16 13 11 19 19 N 1.31511 * 119.99917 * 179.97438 * 18 16 13 20 20 Si 1.86804 * 119.99771 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.46935 * 89.99993 * 20 18 16 22 22 H 1.48503 * 109.46915 * 209.99484 * 20 18 16 23 23 H 1.48494 * 109.47159 * 329.99914 * 20 18 16 24 24 H 1.09005 * 109.46988 * 304.80175 * 1 2 3 25 25 H 1.08992 * 109.47479 * 64.80621 * 1 2 3 26 26 H 1.09002 * 109.47136 * 184.80491 * 1 2 3 27 27 H 1.09001 * 109.47093 * 239.99995 * 2 1 3 28 28 H 1.09005 * 109.47512 * 120.00609 * 2 1 3 29 29 H 1.08992 * 109.47370 * 155.90087 * 4 3 2 30 30 H 1.08997 * 109.46999 * 35.89770 * 4 3 2 31 31 H 1.08000 * 120.41586 * 0.02562 * 6 5 4 32 32 H 1.08002 * 120.78559 * 180.23195 * 7 6 5 33 33 H 1.07991 * 120.41673 * 179.78340 * 8 7 6 34 34 H 1.08004 * 119.61394 * 180.25100 * 9 8 7 35 35 H 1.08997 * 109.47469 * 193.17426 * 15 13 11 36 36 H 1.09002 * 109.47086 * 313.17373 * 15 13 11 37 37 H 1.08999 * 109.47142 * 73.17274 * 15 13 11 38 38 H 0.97001 * 119.99913 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3877 2.0275 1.2618 5 6 1.1542 2.5958 1.9150 6 6 0.4836 1.8544 2.8696 7 6 -0.6475 2.3882 3.4676 8 6 -1.0693 3.6493 3.0741 9 6 -0.3474 4.3314 2.1134 10 7 0.7270 3.7942 1.5690 11 6 2.1278 2.0573 -1.1607 12 8 1.7383 1.5554 -2.1939 13 6 2.7340 3.4369 -1.1749 14 1 2.2024 4.0746 -0.4685 15 6 4.2081 3.3505 -0.7746 16 6 2.6229 4.0202 -2.5600 17 1 2.1600 3.4489 -3.3510 18 6 3.1121 5.2833 -2.8174 19 7 3.0156 5.7921 -4.0263 20 14 3.9120 6.2718 -1.4490 21 1 5.3685 5.9843 -1.4170 22 1 3.6989 7.7207 -1.6953 23 1 3.3047 5.8963 -0.1470 24 1 -0.3633 0.5866 0.8439 25 1 -0.3634 0.4374 -0.9298 26 1 -0.3633 -1.0241 0.0861 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.0972 2.8310 1.0644 30 1 2.8451 1.2938 1.9255 31 1 0.8385 0.8734 3.1488 32 1 -1.1895 1.8334 4.2192 33 1 -1.9483 4.0944 3.5163 34 1 -0.6671 5.3157 1.8045 35 1 4.5848 4.3499 -0.5573 36 1 4.3077 2.7240 0.1118 37 1 4.7819 2.9159 -1.5931 38 1 3.3602 6.6806 -4.2074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597362189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:20 Heat of formation + Delta-G solvation = -13.039872 kcal Electronic energy + Delta-G solvation = -20446.712751 eV Core-core repulsion = 17481.785239 eV Total energy + Delta-G solvation = -2964.927512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48337 -40.46581 -36.92015 -35.92400 -33.76812 -33.24305 -32.73918 -31.22356 -27.67045 -27.09751 -25.45238 -24.33322 -23.23969 -22.87604 -20.06220 -18.81263 -18.00775 -17.59088 -17.34018 -16.81826 -16.48657 -16.20779 -15.92416 -15.17773 -14.87125 -14.66963 -14.52831 -14.44872 -13.95920 -13.82018 -13.53598 -13.43053 -12.89706 -12.88045 -12.70598 -12.53834 -12.31401 -12.13394 -11.90896 -11.47056 -11.18421 -10.76326 -10.73478 -10.44763 -10.25994 -9.90666 -9.59866 -8.26668 -6.32271 0.19169 0.47059 1.30589 1.39245 1.50371 1.85540 2.18668 2.35321 3.01568 3.07746 3.42260 3.80290 3.92259 4.08108 4.20857 4.23654 4.32204 4.35905 4.39857 4.48079 4.58109 4.59754 4.63885 4.71923 4.79105 4.85525 4.91688 5.02448 5.09228 5.25788 5.28779 5.32768 5.52725 5.57223 5.77780 5.87919 6.24286 6.51080 6.81373 7.20414 7.28136 7.47569 8.91472 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.007959 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.488350 B = 3517.282553 C = 4315.533465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 N -0.609 5.609 4 C 0.138 3.862 5 C 0.088 3.912 6 C -0.152 4.152 7 C -0.077 4.077 8 C -0.168 4.168 9 C 0.072 3.928 10 N -0.514 5.514 11 C 0.531 3.469 12 O -0.585 6.585 13 C -0.009 4.009 14 H 0.075 0.925 15 C -0.147 4.147 16 C -0.516 4.516 17 H 0.025 0.975 18 C 0.009 3.991 19 N -0.954 5.954 20 Si 0.953 3.047 21 H -0.258 1.258 22 H -0.297 1.297 23 H -0.235 1.235 24 H 0.060 0.940 25 H 0.012 0.988 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 -9.679 24.205 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.012 4.012 3 N -0.342 5.342 4 C 0.016 3.984 5 C -0.051 4.051 6 C -0.172 4.172 7 C -0.103 4.103 8 C -0.188 4.188 9 C -0.084 4.084 10 N -0.224 5.224 11 C 0.322 3.678 12 O -0.464 6.464 13 C -0.031 4.031 14 H 0.092 0.908 15 C -0.203 4.203 16 C -0.555 4.555 17 H 0.043 0.957 18 C -0.187 4.187 19 N -0.595 5.595 20 Si 0.778 3.222 21 H -0.183 1.183 22 H -0.225 1.225 23 H -0.159 1.159 24 H 0.079 0.921 25 H 0.032 0.968 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.159 0.841 31 H 0.185 0.815 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.907 -9.371 22.908 25.057 hybrid contribution -0.466 0.595 -0.162 0.773 sum -4.373 -8.775 22.746 24.769 Atomic orbital electron populations 1.22106 0.96527 1.02858 1.00398 1.21604 0.94278 0.81518 1.03801 1.48052 1.66223 1.14203 1.05744 1.21066 0.93177 0.99530 0.84675 1.21890 0.97886 0.90544 0.94783 1.22265 0.96409 1.01785 0.96744 1.22018 0.95163 0.94818 0.98275 1.22453 1.01599 0.96465 0.98286 1.23051 0.90982 1.00532 0.93873 1.67463 1.15347 1.13537 1.26046 1.21134 0.76411 0.87824 0.82463 1.90539 1.50467 1.70551 1.34854 1.19254 0.95181 0.91204 0.97435 0.90762 1.22215 0.95617 1.01287 1.01228 1.21125 1.38428 1.00956 0.94957 0.95673 1.25941 0.96241 0.98248 0.98239 1.70080 1.48728 1.17717 1.22978 0.85794 0.79615 0.76280 0.80523 1.18319 1.22502 1.15864 0.92075 0.96845 0.89146 0.92586 0.85583 0.88431 0.84130 0.81527 0.81275 0.82205 0.82854 0.93297 0.89303 0.93640 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 10.19 71.98 0.73 -3.51 16 2 C 0.11 2.87 6.07 86.38 0.52 3.39 16 3 N -0.61 -20.26 2.46 -826.16 -2.04 -22.29 16 4 C 0.14 3.50 4.99 85.63 0.43 3.93 16 5 C 0.09 2.28 5.96 42.55 0.25 2.53 16 6 C -0.15 -2.60 8.29 22.36 0.19 -2.41 16 7 C -0.08 -1.13 10.18 22.47 0.23 -0.91 16 8 C -0.17 -3.03 10.11 22.36 0.23 -2.80 16 9 C 0.07 1.90 11.18 84.67 0.95 2.85 16 10 N -0.51 -16.74 9.36 -183.88 -1.72 -18.46 16 11 C 0.53 25.28 6.92 87.66 0.61 25.89 16 12 O -0.59 -33.69 15.11 -3.04 -0.05 -33.74 16 13 C -0.01 -0.46 1.39 -12.29 -0.02 -0.48 16 14 H 0.07 3.72 5.86 -2.39 -0.01 3.71 16 15 C -0.15 -6.13 7.86 71.98 0.57 -5.56 16 16 C -0.52 -33.08 8.91 25.60 0.23 -32.85 16 17 H 0.02 1.88 7.01 -2.91 -0.02 1.86 16 18 C 0.01 0.58 5.45 84.65 0.46 1.04 16 19 N -0.95 -64.10 13.96 21.45 0.30 -63.80 16 20 Si 0.95 46.33 24.27 68.60 1.67 47.99 16 21 H -0.26 -11.57 7.00 99.48 0.70 -10.88 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 23 H -0.24 -10.44 6.48 99.48 0.64 -9.80 16 24 H 0.06 1.50 6.18 -2.38 -0.01 1.48 16 25 H 0.01 0.45 8.04 -2.39 -0.02 0.44 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.72 7.69 -2.39 -0.02 1.70 16 28 H 0.13 1.89 7.89 -2.38 -0.02 1.87 16 29 H 0.10 2.82 4.16 -2.39 -0.01 2.81 16 30 H 0.14 2.01 7.85 -2.39 -0.02 1.99 16 31 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.16 1.85 8.06 -2.92 -0.02 1.82 16 34 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.05 2.01 3.78 -2.39 -0.01 2.00 16 36 H 0.09 2.82 5.45 -2.39 -0.01 2.81 16 37 H 0.04 2.01 8.07 -2.39 -0.02 1.99 16 38 H 0.27 16.53 8.31 -92.71 -0.77 15.76 16 Total: -1.00 -89.68 303.93 4.52 -85.16 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.99 Total: 14.03 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 5.37 Total: -8.89 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.46 Total: -104.55 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.05 Total: -33.74 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.67 Total: 47.99 kcal Total: -89.68 4.52 -85.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597362189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.122 kcal (2) G-P(sol) polarization free energy of solvation -89.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds