Wall clock time and date at job start Mon Mar 30 2020 04:50:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3
5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1
6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1
7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2
8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2
9 9 H 1.48505 * 109.47285 * 89.99870 * 8 6 4
10 10 H 1.48503 * 109.47250 * 209.99665 * 8 6 4
11 11 H 1.48499 * 109.47267 * 329.99827 * 8 6 4
12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3
13 13 O 1.21285 * 120.00039 * 239.99931 * 12 2 1
14 14 N 1.34774 * 119.99942 * 59.99862 * 12 2 1
15 15 C 1.46500 * 119.99881 * 180.02562 * 14 12 2
16 16 C 1.53005 * 109.47094 * 179.97438 * 15 14 12
17 17 C 1.53002 * 109.46982 * 179.97438 * 16 15 14
18 18 C 1.50701 * 109.47097 * 180.02562 * 17 16 15
19 19 C 1.38229 * 119.61952 * 124.99770 * 18 17 16
20 20 C 1.38623 * 119.16226 * 179.97438 * 19 18 17
21 21 C 1.38670 * 118.42197 * 0.02562 * 20 19 18
22 22 C 1.38179 * 119.16089 * 359.97438 * 21 20 19
23 23 N 1.31854 * 119.61758 * 304.72929 * 18 17 16
24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3
25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3
26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
27 27 H 0.96997 * 119.99545 * 180.02562 * 7 6 4
28 28 H 0.96998 * 120.00125 * 359.97438 * 14 12 2
29 29 H 1.09000 * 109.47175 * 300.00022 * 15 14 12
30 30 H 1.09002 * 109.47092 * 59.99980 * 15 14 12
31 31 H 1.08992 * 109.47061 * 300.00193 * 16 15 14
32 32 H 1.09002 * 109.46935 * 60.00169 * 16 15 14
33 33 H 1.09000 * 109.47312 * 300.00322 * 17 16 15
34 34 H 1.09002 * 109.47067 * 60.00348 * 17 16 15
35 35 H 1.08008 * 120.41753 * 359.96119 * 19 18 17
36 36 H 1.07996 * 120.79087 * 180.02562 * 20 19 18
37 37 H 1.08000 * 120.41895 * 180.02562 * 21 20 19
38 38 H 1.08010 * 119.62004 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6532 -1.5885 1.1313
6 6 1.6993 -0.2394 2.4827
7 7 0.9435 0.8302 2.6034
8 14 2.3214 -1.1204 4.0078
9 1 3.6297 -0.5460 4.4123
10 1 1.3432 -0.9494 5.1120
11 1 2.4858 -2.5663 3.7118
12 6 2.0323 -0.7104 -1.2305
13 8 2.7296 -1.6965 -1.1192
14 7 1.7067 -0.2499 -2.4545
15 6 2.1945 -0.9408 -3.6507
16 6 1.6841 -0.2198 -4.9000
17 6 2.1941 -0.9410 -6.1492
18 6 1.6919 -0.2305 -7.3797
19 6 2.5928 0.2004 -8.3354
20 6 2.1204 0.8525 -9.4638
21 6 0.7533 1.0481 -9.5892
22 6 -0.0867 0.5894 -8.5926
23 7 0.3976 -0.0318 -7.5348
24 1 -0.3634 0.5137 0.8900
25 1 -0.3635 0.5138 -0.8899
26 1 -0.3633 -1.0277 0.0005
27 1 0.7095 1.1617 3.4844
28 1 1.1487 0.5386 -2.5435
29 1 3.2845 -0.9412 -3.6509
30 1 1.8308 -1.9683 -3.6506
31 1 0.5941 -0.2197 -4.8995
32 1 2.0475 0.8079 -4.9003
33 1 3.2841 -0.9407 -6.1494
34 1 1.8311 -1.9688 -6.1491
35 1 3.6515 0.0314 -8.2044
36 1 2.8009 1.1998 -10.2271
37 1 0.3502 1.5519 -10.4553
38 1 -1.1528 0.7374 -8.6829
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597415973.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:50:55
Heat of formation + Delta-G solvation = -23.498049 kcal
Electronic energy + Delta-G solvation = -18487.503808 eV
Core-core repulsion = 15522.122796 eV
Total energy + Delta-G solvation = -2965.381012 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.45407 -38.71755 -35.67271 -33.66127 -33.32955 -32.59104 -30.87158 -29.87196
-26.30014 -25.06837 -23.84283 -23.03696 -21.84057 -21.21160 -19.15898 -17.15548
-16.52922 -16.28416 -15.95264 -15.68174 -15.29251 -14.93591 -14.40045 -14.29559
-13.73332 -13.56069 -13.34541 -12.76607 -12.58504 -12.29312 -12.06916 -11.90432
-11.44256 -11.23107 -10.95371 -10.86016 -10.65214 -10.63124 -10.17382 -10.14353
-9.90894 -9.64382 -9.22822 -8.91413 -8.53844 -8.33783 -8.25853 -5.98025
-4.00758 0.83216 1.00442 3.37268 3.42616 3.49721 3.51742 3.83034
3.95943 4.08180 4.43304 4.53143 4.56081 4.78269 4.83986 5.02832
5.07230 5.22884 5.35169 5.37317 5.50027 5.57366 5.67515 5.85194
5.88361 5.90247 6.16632 6.26023 6.40607 6.46856 6.69238 6.90181
7.00051 7.19281 7.54595 7.76156 7.82142 8.05423 8.22552 8.53758
9.08504 9.33612 9.64662 11.09727
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.052216 B = 0.002964 C = 0.002868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 536.107937 B = 9445.413325 C = 9759.609671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.028 3.972
3 H 0.051 0.949
4 C -0.499 4.499
5 H 0.074 0.926
6 C 0.057 3.943
7 N -0.898 5.898
8 Si 0.900 3.100
9 H -0.281 1.281
10 H -0.287 1.287
11 H -0.273 1.273
12 C 0.518 3.482
13 O -0.549 6.549
14 N -0.747 5.747
15 C 0.120 3.880
16 C -0.121 4.121
17 C -0.068 4.068
18 C 0.136 3.864
19 C -0.172 4.172
20 C -0.074 4.074
21 C -0.184 4.184
22 C 0.103 3.897
23 N -0.479 5.479
24 H 0.092 0.908
25 H 0.012 0.988
26 H 0.031 0.969
27 H 0.260 0.740
28 H 0.396 0.604
29 H 0.058 0.942
30 H 0.060 0.940
31 H 0.079 0.921
32 H 0.065 0.935
33 H 0.082 0.918
34 H 0.087 0.913
35 H 0.135 0.865
36 H 0.133 0.867
37 H 0.133 0.867
38 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.382 2.373 -24.073 24.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.007 3.993
3 H 0.069 0.931
4 C -0.537 4.537
5 H 0.092 0.908
6 C -0.143 4.143
7 N -0.537 5.537
8 Si 0.728 3.272
9 H -0.207 1.207
10 H -0.213 1.213
11 H -0.198 1.198
12 C 0.308 3.692
13 O -0.425 6.425
14 N -0.402 5.402
15 C -0.004 4.004
16 C -0.159 4.159
17 C -0.106 4.106
18 C -0.001 4.001
19 C -0.192 4.192
20 C -0.101 4.101
21 C -0.204 4.204
22 C -0.055 4.055
23 N -0.189 5.189
24 H 0.111 0.889
25 H 0.031 0.969
26 H 0.050 0.950
27 H 0.070 0.930
28 H 0.229 0.771
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.098 0.902
32 H 0.084 0.916
33 H 0.101 0.899
34 H 0.105 0.895
35 H 0.153 0.847
36 H 0.151 0.849
37 H 0.151 0.849
38 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -0.512 1.440 -23.192 23.243
hybrid contribution 0.570 0.397 -0.090 0.700
sum 0.058 1.837 -23.282 23.354
Atomic orbital electron populations
1.21734 0.96567 0.99806 1.00896 1.18869 0.94146 0.96805 0.89470
0.93085 1.21164 1.30776 1.12754 0.89052 0.90808 1.24958 0.95167
0.95118 0.99108 1.69880 1.37239 1.23181 1.23449 0.86453 0.78404
0.80270 0.82087 1.20706 1.21327 1.19763 1.21951 0.78448 0.84263
0.84546 1.90521 1.38125 1.26978 1.86865 1.46275 1.55500 1.32696
1.05689 1.21174 0.98832 0.96358 0.84062 1.21683 1.02394 0.99376
0.92427 1.20496 1.00690 0.99374 0.90055 1.21340 0.88903 0.94507
0.95397 1.22038 1.01262 1.00645 0.95234 1.21591 0.95740 0.95602
0.97119 1.22134 0.94497 1.02668 1.01064 1.22795 1.00487 0.93093
0.89095 1.67510 1.15150 1.13403 1.22811 0.88908 0.96886 0.95019
0.93027 0.77083 0.92333 0.92195 0.90195 0.91640 0.89945 0.89492
0.84725 0.84944 0.84947 0.82760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.12 8.87 37.16 0.33 -2.79 16
2 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16
3 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16
4 C -0.50 -14.51 8.37 -34.44 -0.29 -14.80 16
5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16
6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16
7 N -0.90 -25.68 11.32 55.43 0.63 -25.05 16
8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16
9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16
12 C 0.52 12.23 7.15 -10.99 -0.08 12.15 16
13 O -0.55 -14.78 15.46 5.55 0.09 -14.70 16
14 N -0.75 -13.50 5.45 -60.29 -0.33 -13.83 16
15 C 0.12 1.80 5.67 -4.04 -0.02 1.78 16
16 C -0.12 -1.40 5.19 -26.73 -0.14 -1.54 16
17 C -0.07 -0.67 5.61 -27.88 -0.16 -0.82 16
18 C 0.14 1.41 6.17 -82.59 -0.51 0.90 16
19 C -0.17 -1.45 9.71 -39.44 -0.38 -1.83 16
20 C -0.07 -0.54 10.18 -39.28 -0.40 -0.94 16
21 C -0.18 -1.33 10.11 -39.44 -0.40 -1.73 16
22 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16
23 N -0.48 -5.44 9.89 -9.47 -0.09 -5.54 16
24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16
25 H 0.01 0.25 7.56 -51.93 -0.39 -0.15 16
26 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16
27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
28 H 0.40 6.26 7.89 -40.82 -0.32 5.94 16
29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16
32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16
34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
35 H 0.13 0.86 7.95 -52.48 -0.42 0.44 16
36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16
37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16
38 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16
LS Contribution 322.52 15.07 4.86 4.86
Total: -1.00 -33.53 322.52 -8.02 -41.55
By element:
Atomic # 1 Polarization: 8.00 SS G_CDS: -5.56 Total: 2.44 kcal
Atomic # 6 Polarization: -4.34 SS G_CDS: -2.58 Total: -6.92 kcal
Atomic # 7 Polarization: -44.62 SS G_CDS: 0.21 Total: -44.41 kcal
Atomic # 8 Polarization: -14.78 SS G_CDS: 0.09 Total: -14.70 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -33.53 -8.02 -41.55 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597415973.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.051 kcal
(2) G-P(sol) polarization free energy of solvation -33.533 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.498 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds