Wall clock time and date at job start Mon Mar 30 2020 04:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47285 * 89.99870 * 8 6 4 10 10 H 1.48503 * 109.47250 * 209.99665 * 8 6 4 11 11 H 1.48499 * 109.47267 * 329.99827 * 8 6 4 12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 13 13 O 1.21285 * 120.00039 * 239.99931 * 12 2 1 14 14 N 1.34774 * 119.99942 * 59.99862 * 12 2 1 15 15 C 1.46500 * 119.99881 * 180.02562 * 14 12 2 16 16 C 1.53005 * 109.47094 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46982 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47097 * 180.02562 * 17 16 15 19 19 C 1.38229 * 119.61952 * 124.99770 * 18 17 16 20 20 C 1.38623 * 119.16226 * 179.97438 * 19 18 17 21 21 C 1.38670 * 118.42197 * 0.02562 * 20 19 18 22 22 C 1.38179 * 119.16089 * 359.97438 * 21 20 19 23 23 N 1.31854 * 119.61758 * 304.72929 * 18 17 16 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00125 * 359.97438 * 14 12 2 29 29 H 1.09000 * 109.47175 * 300.00022 * 15 14 12 30 30 H 1.09002 * 109.47092 * 59.99980 * 15 14 12 31 31 H 1.08992 * 109.47061 * 300.00193 * 16 15 14 32 32 H 1.09002 * 109.46935 * 60.00169 * 16 15 14 33 33 H 1.09000 * 109.47312 * 300.00322 * 17 16 15 34 34 H 1.09002 * 109.47067 * 60.00348 * 17 16 15 35 35 H 1.08008 * 120.41753 * 359.96119 * 19 18 17 36 36 H 1.07996 * 120.79087 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.41895 * 180.02562 * 21 20 19 38 38 H 1.08010 * 119.62004 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4545 15 6 2.1945 -0.9408 -3.6507 16 6 1.6841 -0.2198 -4.9000 17 6 2.1941 -0.9410 -6.1492 18 6 1.6919 -0.2305 -7.3797 19 6 2.5928 0.2004 -8.3354 20 6 2.1204 0.8525 -9.4638 21 6 0.7533 1.0481 -9.5892 22 6 -0.0867 0.5894 -8.5926 23 7 0.3976 -0.0318 -7.5348 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.7095 1.1617 3.4844 28 1 1.1487 0.5386 -2.5435 29 1 3.2845 -0.9412 -3.6509 30 1 1.8308 -1.9683 -3.6506 31 1 0.5941 -0.2197 -4.8995 32 1 2.0475 0.8079 -4.9003 33 1 3.2841 -0.9407 -6.1494 34 1 1.8311 -1.9688 -6.1491 35 1 3.6515 0.0314 -8.2044 36 1 2.8009 1.1998 -10.2271 37 1 0.3502 1.5519 -10.4553 38 1 -1.1528 0.7374 -8.6829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597415973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:55 Heat of formation + Delta-G solvation = -23.498049 kcal Electronic energy + Delta-G solvation = -18487.503808 eV Core-core repulsion = 15522.122796 eV Total energy + Delta-G solvation = -2965.381012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45407 -38.71755 -35.67271 -33.66127 -33.32955 -32.59104 -30.87158 -29.87196 -26.30014 -25.06837 -23.84283 -23.03696 -21.84057 -21.21160 -19.15898 -17.15548 -16.52922 -16.28416 -15.95264 -15.68174 -15.29251 -14.93591 -14.40045 -14.29559 -13.73332 -13.56069 -13.34541 -12.76607 -12.58504 -12.29312 -12.06916 -11.90432 -11.44256 -11.23107 -10.95371 -10.86016 -10.65214 -10.63124 -10.17382 -10.14353 -9.90894 -9.64382 -9.22822 -8.91413 -8.53844 -8.33783 -8.25853 -5.98025 -4.00758 0.83216 1.00442 3.37268 3.42616 3.49721 3.51742 3.83034 3.95943 4.08180 4.43304 4.53143 4.56081 4.78269 4.83986 5.02832 5.07230 5.22884 5.35169 5.37317 5.50027 5.57366 5.67515 5.85194 5.88361 5.90247 6.16632 6.26023 6.40607 6.46856 6.69238 6.90181 7.00051 7.19281 7.54595 7.76156 7.82142 8.05423 8.22552 8.53758 9.08504 9.33612 9.64662 11.09727 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.052216 B = 0.002964 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.107937 B = 9445.413325 C = 9759.609671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.549 6.549 14 N -0.747 5.747 15 C 0.120 3.880 16 C -0.121 4.121 17 C -0.068 4.068 18 C 0.136 3.864 19 C -0.172 4.172 20 C -0.074 4.074 21 C -0.184 4.184 22 C 0.103 3.897 23 N -0.479 5.479 24 H 0.092 0.908 25 H 0.012 0.988 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.396 0.604 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 2.373 -24.073 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.308 3.692 13 O -0.425 6.425 14 N -0.402 5.402 15 C -0.004 4.004 16 C -0.159 4.159 17 C -0.106 4.106 18 C -0.001 4.001 19 C -0.192 4.192 20 C -0.101 4.101 21 C -0.204 4.204 22 C -0.055 4.055 23 N -0.189 5.189 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.229 0.771 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.512 1.440 -23.192 23.243 hybrid contribution 0.570 0.397 -0.090 0.700 sum 0.058 1.837 -23.282 23.354 Atomic orbital electron populations 1.21734 0.96567 0.99806 1.00896 1.18869 0.94146 0.96805 0.89470 0.93085 1.21164 1.30776 1.12754 0.89052 0.90808 1.24958 0.95167 0.95118 0.99108 1.69880 1.37239 1.23181 1.23449 0.86453 0.78404 0.80270 0.82087 1.20706 1.21327 1.19763 1.21951 0.78448 0.84263 0.84546 1.90521 1.38125 1.26978 1.86865 1.46275 1.55500 1.32696 1.05689 1.21174 0.98832 0.96358 0.84062 1.21683 1.02394 0.99376 0.92427 1.20496 1.00690 0.99374 0.90055 1.21340 0.88903 0.94507 0.95397 1.22038 1.01262 1.00645 0.95234 1.21591 0.95740 0.95602 0.97119 1.22134 0.94497 1.02668 1.01064 1.22795 1.00487 0.93093 0.89095 1.67510 1.15150 1.13403 1.22811 0.88908 0.96886 0.95019 0.93027 0.77083 0.92333 0.92195 0.90195 0.91640 0.89945 0.89492 0.84725 0.84944 0.84947 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.87 37.16 0.33 -2.79 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.51 8.37 -34.44 -0.29 -14.80 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.52 12.23 7.15 -10.99 -0.08 12.15 16 13 O -0.55 -14.78 15.46 5.55 0.09 -14.70 16 14 N -0.75 -13.50 5.45 -60.29 -0.33 -13.83 16 15 C 0.12 1.80 5.67 -4.04 -0.02 1.78 16 16 C -0.12 -1.40 5.19 -26.73 -0.14 -1.54 16 17 C -0.07 -0.67 5.61 -27.88 -0.16 -0.82 16 18 C 0.14 1.41 6.17 -82.59 -0.51 0.90 16 19 C -0.17 -1.45 9.71 -39.44 -0.38 -1.83 16 20 C -0.07 -0.54 10.18 -39.28 -0.40 -0.94 16 21 C -0.18 -1.33 10.11 -39.44 -0.40 -1.73 16 22 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16 23 N -0.48 -5.44 9.89 -9.47 -0.09 -5.54 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.01 0.25 7.56 -51.93 -0.39 -0.15 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.40 6.26 7.89 -40.82 -0.32 5.94 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.13 0.86 7.95 -52.48 -0.42 0.44 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -33.53 322.52 -8.02 -41.55 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.56 Total: 2.44 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.58 Total: -6.92 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.21 Total: -44.41 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.09 Total: -14.70 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.53 -8.02 -41.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597415973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.051 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds