Wall clock time and date at job start Mon Mar 30 2020 04:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47179 * 2 1 4 4 C 1.38675 * 120.78700 * 90.00147 * 3 2 1 5 5 C 1.38176 * 119.16416 * 179.97438 * 4 3 2 6 6 N 1.31888 * 120.76750 * 0.02562 * 5 4 3 7 7 C 1.31861 * 121.72133 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.61368 * 180.02562 * 7 6 5 9 9 N 1.46506 * 109.47112 * 274.97590 * 8 7 6 10 10 C 1.34772 * 120.00050 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99826 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00241 * 180.02562 * 10 9 8 13 13 H 1.08996 * 109.46841 * 300.00256 * 12 10 9 14 14 C 1.53001 * 109.47158 * 60.00051 * 12 10 9 15 15 C 1.50701 * 109.47304 * 179.97438 * 12 10 9 16 16 H 1.08001 * 119.99456 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00071 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99951 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99945 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47132 * 60.00272 * 19 17 15 21 21 H 1.48500 * 109.46880 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46974 * 300.00233 * 19 17 15 23 23 C 1.38221 * 120.76536 * 0.02562 * 7 6 5 24 24 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47188 * 299.99761 * 1 2 3 26 26 H 1.08997 * 109.47182 * 59.99808 * 1 2 3 27 27 H 1.09008 * 109.46932 * 240.00237 * 2 1 3 28 28 H 1.09001 * 109.47617 * 120.00353 * 2 1 3 29 29 H 1.08004 * 120.41693 * 359.70759 * 4 3 2 30 30 H 1.08003 * 119.61752 * 179.97438 * 5 4 3 31 31 H 1.08989 * 109.47286 * 34.98033 * 8 7 6 32 32 H 1.09002 * 109.46808 * 154.98092 * 8 7 6 33 33 H 0.97002 * 119.99731 * 0.02562 * 9 8 7 34 34 H 1.09000 * 109.47240 * 59.99428 * 14 12 10 35 35 H 1.08996 * 109.47439 * 180.02562 * 14 12 10 36 36 H 1.09007 * 109.46937 * 300.00266 * 14 12 10 37 37 H 0.97000 * 119.99635 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.41915 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2690 2.0900 1.1913 5 6 2.7299 3.3921 1.1522 6 7 2.9440 3.9976 0.0003 7 6 2.7290 3.3927 -1.1515 8 6 2.9902 4.1297 -2.4398 9 7 1.8123 4.9252 -2.7948 10 6 1.8166 5.6720 -3.9167 11 8 2.7958 5.6858 -4.6321 12 6 0.6053 6.4908 -4.2816 13 1 -0.2541 5.8321 -4.4070 14 6 0.3167 7.4991 -3.1676 15 6 0.8664 7.2276 -5.5700 16 1 1.8146 7.1140 -6.0743 17 6 -0.1055 8.0460 -6.1053 18 7 -1.2604 8.1839 -5.4914 19 14 0.2180 8.9587 -7.7028 20 1 0.4985 7.9802 -8.7839 21 1 -0.9757 9.7657 -8.0622 22 1 1.3885 9.8564 -7.5316 23 6 2.2669 2.0906 -1.1908 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.0911 1.6011 2.1378 30 1 2.9162 3.9203 2.0756 31 1 3.8492 4.7886 -2.3138 32 1 3.1964 3.4117 -3.2336 33 1 1.0293 4.9144 -2.2224 34 1 1.1761 8.1577 -3.0420 35 1 -0.5597 8.0910 -3.4312 36 1 0.1280 6.9665 -2.2354 37 1 -1.9440 8.7600 -5.8679 38 1 2.0923 1.6007 -2.1374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597612408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:24 Heat of formation + Delta-G solvation = -22.091422 kcal Electronic energy + Delta-G solvation = -18972.980773 eV Core-core repulsion = 16007.660757 eV Total energy + Delta-G solvation = -2965.320017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52875 -38.63259 -35.41491 -34.23581 -33.66849 -31.51860 -30.55765 -30.20916 -26.54254 -25.07117 -24.59368 -23.12690 -22.24002 -20.69952 -19.34452 -16.85711 -16.73479 -16.20614 -16.03218 -15.28620 -15.20780 -14.47768 -14.38193 -14.12480 -13.92485 -13.62940 -13.17748 -12.88380 -12.66639 -12.53363 -12.10617 -11.85708 -11.75352 -11.40543 -11.22797 -10.95258 -10.69360 -10.63687 -10.19677 -9.92380 -9.69755 -9.54487 -9.29242 -8.93189 -8.53545 -8.40956 -8.26425 -5.98437 -4.01474 0.91505 1.09987 3.39849 3.41872 3.46455 3.51900 3.78383 4.08513 4.26922 4.32591 4.46712 4.53302 4.87200 4.87996 4.99239 5.00602 5.14928 5.34636 5.40989 5.50249 5.55488 5.59513 5.67039 5.85555 5.89879 6.05748 6.14424 6.32839 6.55142 6.69230 6.90372 6.98591 7.08479 7.53353 7.81134 7.90315 8.03770 8.19686 8.49212 9.07208 9.28163 9.63790 11.09182 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032009 B = 0.003824 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.536480 B = 7320.464059 C = 7501.542890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.041 4.041 4 C -0.173 4.173 5 C 0.102 3.898 6 N -0.473 5.473 7 C 0.122 3.878 8 C 0.171 3.829 9 N -0.739 5.739 10 C 0.521 3.479 11 O -0.546 6.546 12 C 0.030 3.970 13 H 0.052 0.948 14 C -0.131 4.131 15 C -0.500 4.500 16 H 0.074 0.926 17 C 0.058 3.942 18 N -0.898 5.898 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.154 4.154 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.396 0.604 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.011 0.989 37 H 0.261 0.739 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -15.623 14.724 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.049 4.049 4 C -0.193 4.193 5 C -0.056 4.056 6 N -0.182 5.182 7 C -0.016 4.016 8 C 0.046 3.954 9 N -0.394 5.394 10 C 0.311 3.689 11 O -0.422 6.422 12 C 0.009 3.991 13 H 0.070 0.930 14 C -0.189 4.189 15 C -0.539 4.539 16 H 0.092 0.908 17 C -0.143 4.143 18 N -0.537 5.537 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.175 4.175 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.173 0.827 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.230 0.770 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.953 -14.642 14.139 20.734 hybrid contribution -0.556 -0.407 -0.337 0.767 sum 3.397 -15.048 13.802 20.700 Atomic orbital electron populations 1.21749 0.94052 1.02107 1.02649 1.20586 0.96674 0.91751 1.03328 1.20338 0.95125 0.96487 0.92937 1.22038 1.02168 0.96556 0.98577 1.22773 0.94676 0.92007 0.96114 1.67555 1.14883 1.37763 0.98016 1.21362 0.94863 0.91568 0.93821 1.19980 0.90858 0.94434 0.90129 1.46240 1.16985 1.49011 1.27139 1.22001 0.91069 0.77672 0.78156 1.90530 1.36298 1.64383 1.50956 1.18868 0.90215 0.93562 0.96413 0.93035 1.21734 1.03101 0.99742 0.94370 1.21117 1.01546 1.25830 1.05388 0.90802 1.24951 0.94945 0.96671 0.97684 1.69871 1.05319 1.39202 1.39315 0.86503 0.77410 0.79694 0.83504 1.20205 1.21418 1.20195 1.21939 1.00846 0.95683 0.99011 0.92025 0.92429 0.92109 0.90461 0.90622 0.84959 0.82687 0.90331 0.90550 0.77028 0.94938 0.88893 0.96975 0.92957 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.09 -0.60 6.11 -27.88 -0.17 -0.78 16 3 C -0.04 -0.39 5.17 -104.32 -0.54 -0.93 16 4 C -0.17 -1.58 9.82 -39.44 -0.39 -1.97 16 5 C 0.10 1.10 11.18 -17.55 -0.20 0.90 16 6 N -0.47 -6.64 10.27 -9.47 -0.10 -6.74 16 7 C 0.12 1.67 6.15 -82.59 -0.51 1.17 16 8 C 0.17 2.74 5.98 -5.19 -0.03 2.71 16 9 N -0.74 -13.69 5.44 -61.47 -0.33 -14.02 16 10 C 0.52 12.26 7.15 -10.99 -0.08 12.18 16 11 O -0.55 -14.55 15.46 5.56 0.09 -14.47 16 12 C 0.03 0.78 2.64 -92.92 -0.25 0.53 16 13 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -3.14 8.86 37.16 0.33 -2.81 16 15 C -0.50 -14.47 8.37 -34.44 -0.29 -14.76 16 16 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 18 N -0.90 -25.57 11.32 55.43 0.63 -24.94 16 19 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.15 -1.76 9.43 -39.44 -0.37 -2.13 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.50 8.10 -51.92 -0.42 0.08 16 28 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 30 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 31 H 0.08 1.37 8.14 -51.94 -0.42 0.94 16 32 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 33 H 0.40 6.72 7.88 -40.82 -0.32 6.40 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 36 H 0.01 0.23 7.57 -51.92 -0.39 -0.16 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -32.53 323.27 -7.66 -40.19 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.58 Total: 2.98 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.21 Total: -4.99 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.20 Total: -45.70 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.53 -7.66 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.101 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds