Wall clock time and date at job start Mon Mar 30 2020 04:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47179 * 2 1 4 4 C 1.38675 * 120.78700 * 90.00147 * 3 2 1 5 5 C 1.38176 * 119.16416 * 179.97438 * 4 3 2 6 6 N 1.31888 * 120.76750 * 0.02562 * 5 4 3 7 7 C 1.31861 * 121.72133 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.61368 * 180.02562 * 7 6 5 9 9 N 1.46506 * 109.47112 * 274.97590 * 8 7 6 10 10 C 1.34772 * 120.00050 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99826 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00241 * 180.02562 * 10 9 8 13 13 H 1.08996 * 109.46841 * 300.00256 * 12 10 9 14 14 C 1.53001 * 109.47158 * 60.00051 * 12 10 9 15 15 C 1.50701 * 109.47304 * 179.97438 * 12 10 9 16 16 H 1.08001 * 119.99456 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00071 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99951 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99945 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47132 * 60.00272 * 19 17 15 21 21 H 1.48500 * 109.46880 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46974 * 300.00233 * 19 17 15 23 23 C 1.38221 * 120.76536 * 0.02562 * 7 6 5 24 24 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47188 * 299.99761 * 1 2 3 26 26 H 1.08997 * 109.47182 * 59.99808 * 1 2 3 27 27 H 1.09008 * 109.46932 * 240.00237 * 2 1 3 28 28 H 1.09001 * 109.47617 * 120.00353 * 2 1 3 29 29 H 1.08004 * 120.41693 * 359.70759 * 4 3 2 30 30 H 1.08003 * 119.61752 * 179.97438 * 5 4 3 31 31 H 1.08989 * 109.47286 * 34.98033 * 8 7 6 32 32 H 1.09002 * 109.46808 * 154.98092 * 8 7 6 33 33 H 0.97002 * 119.99731 * 0.02562 * 9 8 7 34 34 H 1.09000 * 109.47240 * 59.99428 * 14 12 10 35 35 H 1.08996 * 109.47439 * 180.02562 * 14 12 10 36 36 H 1.09007 * 109.46937 * 300.00266 * 14 12 10 37 37 H 0.97000 * 119.99635 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.41915 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2690 2.0900 1.1913 5 6 2.7299 3.3921 1.1522 6 7 2.9440 3.9976 0.0003 7 6 2.7290 3.3927 -1.1515 8 6 2.9902 4.1297 -2.4398 9 7 1.8123 4.9252 -2.7948 10 6 1.8166 5.6720 -3.9167 11 8 2.7958 5.6858 -4.6321 12 6 0.6053 6.4908 -4.2816 13 1 -0.2541 5.8321 -4.4070 14 6 0.3167 7.4991 -3.1676 15 6 0.8664 7.2276 -5.5700 16 1 1.8146 7.1140 -6.0743 17 6 -0.1055 8.0460 -6.1053 18 7 -1.2604 8.1839 -5.4914 19 14 0.2180 8.9587 -7.7028 20 1 0.4985 7.9802 -8.7839 21 1 -0.9757 9.7657 -8.0622 22 1 1.3885 9.8564 -7.5316 23 6 2.2669 2.0906 -1.1908 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.0911 1.6011 2.1378 30 1 2.9162 3.9203 2.0756 31 1 3.8492 4.7886 -2.3138 32 1 3.1964 3.4117 -3.2336 33 1 1.0293 4.9144 -2.2224 34 1 1.1761 8.1577 -3.0420 35 1 -0.5597 8.0910 -3.4312 36 1 0.1280 6.9665 -2.2354 37 1 -1.9440 8.7600 -5.8679 38 1 2.0923 1.6007 -2.1374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597612408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:24 Heat of formation + Delta-G solvation = -43.238146 kcal Electronic energy + Delta-G solvation = -18973.897764 eV Core-core repulsion = 16007.660757 eV Total energy + Delta-G solvation = -2966.237007 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45756 -40.40736 -36.39355 -35.77788 -35.46955 -32.98943 -31.92738 -31.24695 -27.83976 -27.17572 -25.30595 -24.40835 -23.65809 -21.61161 -21.13707 -18.41964 -18.02490 -17.72167 -17.12989 -16.90706 -16.44513 -16.08529 -15.91569 -15.12202 -14.81488 -14.64050 -14.55833 -14.35425 -14.01081 -13.81016 -13.38881 -13.22890 -12.96906 -12.73485 -12.65432 -12.59274 -12.33279 -12.21112 -12.00095 -11.79653 -11.06112 -10.69110 -10.49719 -10.46387 -10.37491 -10.04252 -9.97063 -8.14529 -6.25335 0.03839 0.29294 1.42001 1.44061 1.52517 1.89711 2.29978 2.48614 2.93950 3.14896 3.20619 3.56989 3.77812 4.10132 4.14704 4.22686 4.32718 4.44928 4.47593 4.55321 4.66244 4.72946 4.78639 4.83386 4.93290 5.00220 5.00391 5.06448 5.15485 5.37759 5.43496 5.47672 5.48351 5.73549 5.75640 5.91992 6.19429 6.67987 6.84343 7.02260 7.38749 7.49909 8.91365 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032009 B = 0.003824 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.536480 B = 7320.464059 C = 7501.542890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.041 4.041 4 C -0.159 4.159 5 C 0.091 3.909 6 N -0.507 5.507 7 C 0.101 3.899 8 C 0.174 3.826 9 N -0.718 5.718 10 C 0.523 3.477 11 O -0.584 6.584 12 C 0.025 3.975 13 H 0.043 0.957 14 C -0.118 4.118 15 C -0.531 4.531 16 H 0.050 0.950 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.958 3.042 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.277 1.277 23 C -0.157 4.157 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.168 0.832 30 H 0.180 0.820 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.406 0.594 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.265 0.735 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -17.118 16.412 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.049 4.049 4 C -0.179 4.179 5 C -0.066 4.066 6 N -0.217 5.217 7 C -0.036 4.036 8 C 0.050 3.950 9 N -0.371 5.371 10 C 0.313 3.687 11 O -0.464 6.464 12 C 0.004 3.996 13 H 0.061 0.939 14 C -0.176 4.176 15 C -0.569 4.569 16 H 0.068 0.932 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.202 1.202 23 C -0.178 4.178 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.185 0.815 30 H 0.197 0.803 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.241 0.759 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.455 -16.161 15.870 22.912 hybrid contribution -0.423 -0.030 -0.734 0.848 sum 3.033 -16.190 15.136 22.370 Atomic orbital electron populations 1.21749 0.93945 1.02872 1.01946 1.20651 0.96574 0.90096 1.04689 1.20693 0.94186 0.97684 0.92357 1.22428 0.99845 0.95726 0.99884 1.23254 0.94455 0.93069 0.95840 1.67446 1.16142 1.39202 0.98952 1.20946 0.97533 0.92402 0.92738 1.19994 0.88928 0.93949 0.92150 1.45952 1.18154 1.47630 1.25405 1.21575 0.89914 0.78076 0.79167 1.90504 1.37316 1.65951 1.52606 1.18807 0.90820 0.93923 0.96021 0.93917 1.21543 1.01568 0.99165 0.95295 1.21262 1.01027 1.27418 1.07198 0.93176 1.25617 0.94705 0.97089 1.00543 1.69950 1.05632 1.39258 1.40250 0.85620 0.77641 0.78567 0.79867 1.20008 1.19870 1.20221 1.22041 1.00487 0.94866 1.00393 0.90585 0.92330 0.93618 0.89950 0.88500 0.81460 0.80318 0.92080 0.90046 0.75911 0.95950 0.90873 0.93607 0.92558 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.89 71.98 0.71 -0.92 16 2 C -0.08 -0.89 6.11 29.85 0.18 -0.71 16 3 C -0.04 -0.68 5.17 -19.67 -0.10 -0.78 16 4 C -0.16 -2.36 9.82 22.36 0.22 -2.14 16 5 C 0.09 1.76 11.18 84.67 0.95 2.71 16 6 N -0.51 -13.81 10.27 -183.88 -1.89 -15.70 16 7 C 0.10 2.72 6.15 42.55 0.26 2.98 16 8 C 0.17 5.68 5.98 85.63 0.51 6.19 16 9 N -0.72 -26.84 5.44 -466.79 -2.54 -29.38 16 10 C 0.52 25.22 7.15 87.66 0.63 25.85 16 11 O -0.58 -32.25 15.46 -3.03 -0.05 -32.29 16 12 C 0.03 1.33 2.64 -12.29 -0.03 1.30 16 13 H 0.04 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.12 -5.65 8.86 71.98 0.64 -5.01 16 15 C -0.53 -31.50 8.37 25.60 0.21 -31.28 16 16 H 0.05 3.16 6.75 -2.91 -0.02 3.14 16 17 C 0.02 1.11 5.30 84.65 0.45 1.56 16 18 N -0.91 -52.04 11.32 21.45 0.24 -51.79 16 19 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 20 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 C -0.16 -3.38 9.43 22.36 0.21 -3.17 16 24 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 0.83 8.10 -2.38 -0.02 0.81 16 28 H 0.10 0.68 8.10 -2.39 -0.02 0.66 16 29 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 30 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.55 8.04 -2.39 -0.02 2.53 16 33 H 0.41 13.61 7.88 -92.71 -0.73 12.88 16 34 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 36 H 0.05 1.83 7.57 -2.38 -0.02 1.81 16 37 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -71.24 323.27 2.95 -68.28 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.32 Total: 16.67 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 4.84 Total: -3.41 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -4.19 Total: -96.87 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.29 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.24 2.95 -68.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.046 kcal (2) G-P(sol) polarization free energy of solvation -71.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds