Wall clock time and date at job start Mon Mar 30 2020 04:18:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50697 * 109.47074 * 2 1
4 4 C 1.38669 * 120.79233 * 90.00285 * 3 2 1
5 5 C 1.38178 * 119.16723 * 179.97438 * 4 3 2
6 6 N 1.31885 * 120.76228 * 359.97438 * 5 4 3
7 7 C 1.31853 * 121.72813 * 0.02562 * 6 5 4
8 8 C 1.50700 * 119.61948 * 180.02562 * 7 6 5
9 9 N 1.46498 * 109.47329 * 275.00497 * 8 7 6
10 10 C 1.34770 * 120.00284 * 179.97438 * 9 8 7
11 11 O 1.21283 * 119.99833 * 0.02562 * 10 9 8
12 12 C 1.50703 * 120.00307 * 180.02562 * 10 9 8
13 13 H 1.08995 * 109.47034 * 60.00225 * 12 10 9
14 14 C 1.53005 * 109.47012 * 299.99943 * 12 10 9
15 15 C 1.50704 * 109.47187 * 180.02562 * 12 10 9
16 16 H 1.07994 * 120.00471 * 35.09752 * 15 12 10
17 17 C 1.37881 * 119.99643 * 215.10918 * 15 12 10
18 18 N 1.31516 * 119.99696 * 184.90661 * 17 15 12
19 19 Si 1.86799 * 120.00269 * 4.89906 * 17 15 12
20 20 H 1.48496 * 109.46932 * 84.82446 * 19 17 15
21 21 H 1.48491 * 109.47212 * 204.82741 * 19 17 15
22 22 H 1.48507 * 109.46996 * 324.82915 * 19 17 15
23 23 C 1.38232 * 120.76218 * 0.28147 * 7 6 5
24 24 H 1.08999 * 109.46872 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46439 * 299.99952 * 1 2 3
26 26 H 1.09000 * 109.46972 * 59.99822 * 1 2 3
27 27 H 1.09004 * 109.46876 * 239.99740 * 2 1 3
28 28 H 1.09000 * 109.46972 * 120.00177 * 2 1 3
29 29 H 1.08002 * 120.41510 * 0.02562 * 4 3 2
30 30 H 1.07998 * 119.62226 * 179.97438 * 5 4 3
31 31 H 1.08995 * 109.47413 * 155.00301 * 8 7 6
32 32 H 1.08997 * 109.47193 * 35.00295 * 8 7 6
33 33 H 0.97000 * 120.00223 * 359.97438 * 9 8 7
34 34 H 1.08999 * 109.47215 * 295.07447 * 14 12 10
35 35 H 1.08996 * 109.46878 * 175.07571 * 14 12 10
36 36 H 1.08997 * 109.46791 * 55.07504 * 14 12 10
37 37 H 0.97001 * 120.00027 * 179.97438 * 18 17 15
38 38 H 1.08000 * 120.41558 * 179.70272 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2690 2.0901 1.1912
5 6 2.7299 3.3921 1.1520
6 7 2.9449 3.9972 0.0001
7 6 2.7309 3.3920 -1.1517
8 6 2.9931 4.1284 -2.4401
9 7 1.8157 4.9243 -2.7960
10 6 1.8214 5.6715 -3.9175
11 8 2.8010 5.6848 -4.6325
12 6 0.6105 6.4907 -4.2833
13 1 0.4043 7.2087 -3.4896
14 6 -0.5958 5.5664 -4.4611
15 6 0.8726 7.2270 -5.5718
16 1 1.4683 6.7660 -6.3457
17 6 0.3521 8.4895 -5.7625
18 7 0.4987 9.0929 -6.9219
19 14 -0.5615 9.3427 -4.3744
20 1 0.4131 10.0291 -3.4889
21 1 -1.5034 10.3407 -4.9416
22 1 -1.3203 8.3362 -3.5891
23 6 2.2638 2.0916 -1.1909
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3632 0.5139 0.8901
26 1 -0.3633 0.5139 -0.8900
27 1 1.8933 -0.5139 -0.8900
28 1 1.8933 -0.5139 0.8900
29 1 2.0961 1.5995 2.1377
30 1 2.9163 3.9204 2.0753
31 1 3.1995 3.4103 -3.2335
32 1 3.8522 4.7872 -2.3137
33 1 1.0321 4.9135 -2.2244
34 1 -0.4254 4.9060 -5.3113
35 1 -1.4891 6.1651 -4.6393
36 1 -0.7323 4.9697 -3.5592
37 1 0.1322 9.9809 -7.0562
38 1 2.0860 1.6028 -2.1374
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597612409.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:18:25
Heat of formation + Delta-G solvation = -19.899129 kcal
Electronic energy + Delta-G solvation = -19041.113428 eV
Core-core repulsion = 16075.888477 eV
Total energy + Delta-G solvation = -2965.224952 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.58525 -38.74049 -35.46856 -34.28846 -33.60652 -31.70024 -30.87037 -30.59827
-26.67949 -25.21637 -24.64748 -23.19435 -22.20928 -20.74228 -19.30868 -17.02011
-16.89440 -16.73482 -16.09173 -15.38935 -15.30457 -14.55201 -14.26524 -14.16976
-13.97069 -13.65582 -13.30808 -12.99200 -12.75656 -12.53096 -12.28513 -12.03292
-11.92021 -11.79172 -11.33782 -11.27527 -11.06005 -10.72298 -10.22976 -9.79370
-9.74946 -9.59529 -9.35271 -9.13283 -8.62811 -8.50931 -8.45565 -6.03231
-4.02210 0.86007 1.04709 3.28061 3.34898 3.37192 3.44351 3.68373
4.01169 4.20093 4.27277 4.41895 4.42179 4.82196 4.82987 4.94201
4.95610 5.10001 5.27186 5.36142 5.45461 5.50511 5.54746 5.61628
5.78912 5.84026 6.00356 6.08985 6.09576 6.18857 6.42665 6.49974
6.55975 6.86354 6.98828 7.21118 7.59187 7.84899 8.18754 8.58092
9.12423 9.19322 9.56660 11.10074
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.028325 B = 0.004177 C = 0.004125
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.278245 B = 6701.481890 C = 6786.613947
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.086 4.086
3 C -0.041 4.041
4 C -0.173 4.173
5 C 0.102 3.898
6 N -0.473 5.473
7 C 0.121 3.879
8 C 0.170 3.830
9 N -0.741 5.741
10 C 0.521 3.479
11 O -0.529 6.529
12 C -0.004 4.004
13 H 0.054 0.946
14 C -0.133 4.133
15 C -0.494 4.494
16 H 0.086 0.914
17 C 0.071 3.929
18 N -0.895 5.895
19 Si 0.871 3.129
20 H -0.275 1.275
21 H -0.287 1.287
22 H -0.265 1.265
23 C -0.154 4.154
24 H 0.061 0.939
25 H 0.056 0.944
26 H 0.059 0.941
27 H 0.077 0.923
28 H 0.075 0.925
29 H 0.133 0.867
30 H 0.156 0.844
31 H 0.078 0.922
32 H 0.080 0.920
33 H 0.394 0.606
34 H 0.052 0.948
35 H 0.054 0.946
36 H 0.025 0.975
37 H 0.264 0.736
38 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.449 -17.963 18.265 25.622
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.124 4.124
3 C -0.049 4.049
4 C -0.193 4.193
5 C -0.056 4.056
6 N -0.183 5.183
7 C -0.017 4.017
8 C 0.046 3.954
9 N -0.397 5.397
10 C 0.309 3.691
11 O -0.403 6.403
12 C -0.026 4.026
13 H 0.072 0.928
14 C -0.191 4.191
15 C -0.532 4.532
16 H 0.104 0.896
17 C -0.130 4.130
18 N -0.533 5.533
19 Si 0.698 3.302
20 H -0.201 1.201
21 H -0.213 1.213
22 H -0.190 1.190
23 C -0.174 4.174
24 H 0.080 0.920
25 H 0.075 0.925
26 H 0.079 0.921
27 H 0.096 0.904
28 H 0.094 0.906
29 H 0.151 0.849
30 H 0.173 0.827
31 H 0.096 0.904
32 H 0.098 0.902
33 H 0.228 0.772
34 H 0.071 0.929
35 H 0.073 0.927
36 H 0.044 0.956
37 H 0.074 0.926
38 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 0.558 -16.896 17.575 24.386
hybrid contribution -1.119 -0.290 1.157 1.635
sum -0.561 -17.186 18.732 25.428
Atomic orbital electron populations
1.21750 0.94072 1.02127 1.02583 1.20589 0.96652 0.91748 1.03383
1.20339 0.95126 0.96467 0.92930 1.22043 1.02139 0.96543 0.98605
1.22771 0.94644 0.92044 0.96101 1.67549 1.14910 1.37814 0.98036
1.21366 0.94894 0.91614 0.93804 1.19997 0.90772 0.94489 0.90165
1.46295 1.17008 1.49211 1.27162 1.21790 0.90799 0.78000 0.78503
1.90585 1.35657 1.63432 1.50598 1.19348 0.89571 0.94349 0.99312
0.92775 1.21945 0.98940 0.99016 0.99181 1.20752 1.32706 1.00524
0.99221 0.89578 1.25025 0.95650 0.96916 0.95423 1.69886 1.45928
1.14682 1.22825 0.86961 0.80275 0.79866 0.83062 1.20062 1.21279
1.18986 1.21944 1.00801 0.95671 0.99020 0.92000 0.92456 0.92149
0.90419 0.90597 0.84943 0.82688 0.90401 0.90181 0.77240 0.92876
0.92725 0.95617 0.92569 0.84551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.94 9.89 37.16 0.37 -0.57 16
2 C -0.09 -0.57 6.11 -27.88 -0.17 -0.74 16
3 C -0.04 -0.37 5.17 -104.32 -0.54 -0.91 16
4 C -0.17 -1.50 9.82 -39.44 -0.39 -1.88 16
5 C 0.10 1.05 11.18 -17.55 -0.20 0.86 16
6 N -0.47 -6.41 10.27 -9.47 -0.10 -6.51 16
7 C 0.12 1.59 6.15 -82.59 -0.51 1.08 16
8 C 0.17 2.63 5.98 -5.19 -0.03 2.60 16
9 N -0.74 -13.01 5.41 -61.48 -0.33 -13.34 16
10 C 0.52 11.81 7.15 -10.99 -0.08 11.73 16
11 O -0.53 -14.07 15.77 5.55 0.09 -13.99 16
12 C 0.00 -0.09 2.30 -92.92 -0.21 -0.31 16
13 H 0.05 1.26 5.29 -51.93 -0.27 0.99 16
14 C -0.13 -2.68 9.12 37.16 0.34 -2.34 16
15 C -0.49 -14.40 8.36 -34.44 -0.29 -14.69 16
16 H 0.09 2.84 7.61 -52.49 -0.40 2.44 16
17 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16
18 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16
19 Si 0.87 21.33 26.99 -169.99 -4.59 16.74 16
20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16
21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
22 H -0.26 -6.00 6.82 56.52 0.39 -5.61 16
23 C -0.15 -1.66 9.43 -39.44 -0.37 -2.03 16
24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
27 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16
28 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16
29 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16
30 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16
31 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16
32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
33 H 0.39 6.13 7.82 -40.82 -0.32 5.81 16
34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16
36 H 0.02 0.42 7.43 -51.93 -0.39 0.03 16
37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
38 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16
LS Contribution 323.30 15.07 4.87 4.87
Total: -1.00 -34.47 323.30 -7.06 -41.52
By element:
Atomic # 1 Polarization: 8.61 SS G_CDS: -5.59 Total: 3.01 kcal
Atomic # 6 Polarization: -3.02 SS G_CDS: -2.18 Total: -5.20 kcal
Atomic # 7 Polarization: -47.31 SS G_CDS: 0.34 Total: -46.96 kcal
Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.99 kcal
Atomic # 14 Polarization: 21.33 SS G_CDS: -4.59 Total: 16.74 kcal
Total LS contribution 4.87 Total: 4.87 kcal
Total: -34.47 -7.06 -41.52 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597612409.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.626 kcal
(2) G-P(sol) polarization free energy of solvation -34.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.844 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.899 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds