Wall clock time and date at job start Mon Mar 30 2020 04:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47074 * 2 1 4 4 C 1.38669 * 120.79233 * 90.00285 * 3 2 1 5 5 C 1.38178 * 119.16723 * 179.97438 * 4 3 2 6 6 N 1.31885 * 120.76228 * 359.97438 * 5 4 3 7 7 C 1.31853 * 121.72813 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.61948 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47329 * 275.00497 * 8 7 6 10 10 C 1.34770 * 120.00284 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99833 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00307 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.47034 * 60.00225 * 12 10 9 14 14 C 1.53005 * 109.47012 * 299.99943 * 12 10 9 15 15 C 1.50704 * 109.47187 * 180.02562 * 12 10 9 16 16 H 1.07994 * 120.00471 * 35.09752 * 15 12 10 17 17 C 1.37881 * 119.99643 * 215.10918 * 15 12 10 18 18 N 1.31516 * 119.99696 * 184.90661 * 17 15 12 19 19 Si 1.86799 * 120.00269 * 4.89906 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.82446 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.82741 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.82915 * 19 17 15 23 23 C 1.38232 * 120.76218 * 0.28147 * 7 6 5 24 24 H 1.08999 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46439 * 299.99952 * 1 2 3 26 26 H 1.09000 * 109.46972 * 59.99822 * 1 2 3 27 27 H 1.09004 * 109.46876 * 239.99740 * 2 1 3 28 28 H 1.09000 * 109.46972 * 120.00177 * 2 1 3 29 29 H 1.08002 * 120.41510 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.62226 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47413 * 155.00301 * 8 7 6 32 32 H 1.08997 * 109.47193 * 35.00295 * 8 7 6 33 33 H 0.97000 * 120.00223 * 359.97438 * 9 8 7 34 34 H 1.08999 * 109.47215 * 295.07447 * 14 12 10 35 35 H 1.08996 * 109.46878 * 175.07571 * 14 12 10 36 36 H 1.08997 * 109.46791 * 55.07504 * 14 12 10 37 37 H 0.97001 * 120.00027 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.41558 * 179.70272 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2690 2.0901 1.1912 5 6 2.7299 3.3921 1.1520 6 7 2.9449 3.9972 0.0001 7 6 2.7309 3.3920 -1.1517 8 6 2.9931 4.1284 -2.4401 9 7 1.8157 4.9243 -2.7960 10 6 1.8214 5.6715 -3.9175 11 8 2.8010 5.6848 -4.6325 12 6 0.6105 6.4907 -4.2833 13 1 0.4043 7.2087 -3.4896 14 6 -0.5958 5.5664 -4.4611 15 6 0.8726 7.2270 -5.5718 16 1 1.4683 6.7660 -6.3457 17 6 0.3521 8.4895 -5.7625 18 7 0.4987 9.0929 -6.9219 19 14 -0.5615 9.3427 -4.3744 20 1 0.4131 10.0291 -3.4889 21 1 -1.5034 10.3407 -4.9416 22 1 -1.3203 8.3362 -3.5891 23 6 2.2638 2.0916 -1.1909 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0961 1.5995 2.1377 30 1 2.9163 3.9204 2.0753 31 1 3.1995 3.4103 -3.2335 32 1 3.8522 4.7872 -2.3137 33 1 1.0321 4.9135 -2.2244 34 1 -0.4254 4.9060 -5.3113 35 1 -1.4891 6.1651 -4.6393 36 1 -0.7323 4.9697 -3.5592 37 1 0.1322 9.9809 -7.0562 38 1 2.0860 1.6028 -2.1374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597612409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:25 Heat of formation + Delta-G solvation = -19.899129 kcal Electronic energy + Delta-G solvation = -19041.113428 eV Core-core repulsion = 16075.888477 eV Total energy + Delta-G solvation = -2965.224952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58525 -38.74049 -35.46856 -34.28846 -33.60652 -31.70024 -30.87037 -30.59827 -26.67949 -25.21637 -24.64748 -23.19435 -22.20928 -20.74228 -19.30868 -17.02011 -16.89440 -16.73482 -16.09173 -15.38935 -15.30457 -14.55201 -14.26524 -14.16976 -13.97069 -13.65582 -13.30808 -12.99200 -12.75656 -12.53096 -12.28513 -12.03292 -11.92021 -11.79172 -11.33782 -11.27527 -11.06005 -10.72298 -10.22976 -9.79370 -9.74946 -9.59529 -9.35271 -9.13283 -8.62811 -8.50931 -8.45565 -6.03231 -4.02210 0.86007 1.04709 3.28061 3.34898 3.37192 3.44351 3.68373 4.01169 4.20093 4.27277 4.41895 4.42179 4.82196 4.82987 4.94201 4.95610 5.10001 5.27186 5.36142 5.45461 5.50511 5.54746 5.61628 5.78912 5.84026 6.00356 6.08985 6.09576 6.18857 6.42665 6.49974 6.55975 6.86354 6.98828 7.21118 7.59187 7.84899 8.18754 8.58092 9.12423 9.19322 9.56660 11.10074 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.004177 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.278245 B = 6701.481890 C = 6786.613947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.041 4.041 4 C -0.173 4.173 5 C 0.102 3.898 6 N -0.473 5.473 7 C 0.121 3.879 8 C 0.170 3.830 9 N -0.741 5.741 10 C 0.521 3.479 11 O -0.529 6.529 12 C -0.004 4.004 13 H 0.054 0.946 14 C -0.133 4.133 15 C -0.494 4.494 16 H 0.086 0.914 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.871 3.129 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.154 4.154 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.394 0.606 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 -17.963 18.265 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.049 4.049 4 C -0.193 4.193 5 C -0.056 4.056 6 N -0.183 5.183 7 C -0.017 4.017 8 C 0.046 3.954 9 N -0.397 5.397 10 C 0.309 3.691 11 O -0.403 6.403 12 C -0.026 4.026 13 H 0.072 0.928 14 C -0.191 4.191 15 C -0.532 4.532 16 H 0.104 0.896 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.698 3.302 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.174 4.174 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.151 0.849 30 H 0.173 0.827 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.228 0.772 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.558 -16.896 17.575 24.386 hybrid contribution -1.119 -0.290 1.157 1.635 sum -0.561 -17.186 18.732 25.428 Atomic orbital electron populations 1.21750 0.94072 1.02127 1.02583 1.20589 0.96652 0.91748 1.03383 1.20339 0.95126 0.96467 0.92930 1.22043 1.02139 0.96543 0.98605 1.22771 0.94644 0.92044 0.96101 1.67549 1.14910 1.37814 0.98036 1.21366 0.94894 0.91614 0.93804 1.19997 0.90772 0.94489 0.90165 1.46295 1.17008 1.49211 1.27162 1.21790 0.90799 0.78000 0.78503 1.90585 1.35657 1.63432 1.50598 1.19348 0.89571 0.94349 0.99312 0.92775 1.21945 0.98940 0.99016 0.99181 1.20752 1.32706 1.00524 0.99221 0.89578 1.25025 0.95650 0.96916 0.95423 1.69886 1.45928 1.14682 1.22825 0.86961 0.80275 0.79866 0.83062 1.20062 1.21279 1.18986 1.21944 1.00801 0.95671 0.99020 0.92000 0.92456 0.92149 0.90419 0.90597 0.84943 0.82688 0.90401 0.90181 0.77240 0.92876 0.92725 0.95617 0.92569 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.57 16 2 C -0.09 -0.57 6.11 -27.88 -0.17 -0.74 16 3 C -0.04 -0.37 5.17 -104.32 -0.54 -0.91 16 4 C -0.17 -1.50 9.82 -39.44 -0.39 -1.88 16 5 C 0.10 1.05 11.18 -17.55 -0.20 0.86 16 6 N -0.47 -6.41 10.27 -9.47 -0.10 -6.51 16 7 C 0.12 1.59 6.15 -82.59 -0.51 1.08 16 8 C 0.17 2.63 5.98 -5.19 -0.03 2.60 16 9 N -0.74 -13.01 5.41 -61.48 -0.33 -13.34 16 10 C 0.52 11.81 7.15 -10.99 -0.08 11.73 16 11 O -0.53 -14.07 15.77 5.55 0.09 -13.99 16 12 C 0.00 -0.09 2.30 -92.92 -0.21 -0.31 16 13 H 0.05 1.26 5.29 -51.93 -0.27 0.99 16 14 C -0.13 -2.68 9.12 37.16 0.34 -2.34 16 15 C -0.49 -14.40 8.36 -34.44 -0.29 -14.69 16 16 H 0.09 2.84 7.61 -52.49 -0.40 2.44 16 17 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 19 Si 0.87 21.33 26.99 -169.99 -4.59 16.74 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.26 -6.00 6.82 56.52 0.39 -5.61 16 23 C -0.15 -1.66 9.43 -39.44 -0.37 -2.03 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.39 6.13 7.82 -40.82 -0.32 5.81 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.42 7.43 -51.93 -0.39 0.03 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 323.30 15.07 4.87 4.87 Total: -1.00 -34.47 323.30 -7.06 -41.52 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.59 Total: 3.01 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.18 Total: -5.20 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.34 Total: -46.96 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.59 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.47 -7.06 -41.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.626 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds