Wall clock time and date at job start Mon Mar 30 2020 04:18:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50697 * 109.47074 * 2 1
4 4 C 1.38669 * 120.79233 * 90.00285 * 3 2 1
5 5 C 1.38178 * 119.16723 * 179.97438 * 4 3 2
6 6 N 1.31885 * 120.76228 * 359.97438 * 5 4 3
7 7 C 1.31853 * 121.72813 * 0.02562 * 6 5 4
8 8 C 1.50700 * 119.61948 * 180.02562 * 7 6 5
9 9 N 1.46498 * 109.47329 * 275.00497 * 8 7 6
10 10 C 1.34770 * 120.00284 * 179.97438 * 9 8 7
11 11 O 1.21283 * 119.99833 * 0.02562 * 10 9 8
12 12 C 1.50703 * 120.00307 * 180.02562 * 10 9 8
13 13 H 1.08995 * 109.47034 * 60.00225 * 12 10 9
14 14 C 1.53005 * 109.47012 * 299.99943 * 12 10 9
15 15 C 1.50704 * 109.47187 * 180.02562 * 12 10 9
16 16 H 1.07994 * 120.00471 * 35.09752 * 15 12 10
17 17 C 1.37881 * 119.99643 * 215.10918 * 15 12 10
18 18 N 1.31516 * 119.99696 * 184.90661 * 17 15 12
19 19 Si 1.86799 * 120.00269 * 4.89906 * 17 15 12
20 20 H 1.48496 * 109.46932 * 84.82446 * 19 17 15
21 21 H 1.48491 * 109.47212 * 204.82741 * 19 17 15
22 22 H 1.48507 * 109.46996 * 324.82915 * 19 17 15
23 23 C 1.38232 * 120.76218 * 0.28147 * 7 6 5
24 24 H 1.08999 * 109.46872 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46439 * 299.99952 * 1 2 3
26 26 H 1.09000 * 109.46972 * 59.99822 * 1 2 3
27 27 H 1.09004 * 109.46876 * 239.99740 * 2 1 3
28 28 H 1.09000 * 109.46972 * 120.00177 * 2 1 3
29 29 H 1.08002 * 120.41510 * 0.02562 * 4 3 2
30 30 H 1.07998 * 119.62226 * 179.97438 * 5 4 3
31 31 H 1.08995 * 109.47413 * 155.00301 * 8 7 6
32 32 H 1.08997 * 109.47193 * 35.00295 * 8 7 6
33 33 H 0.97000 * 120.00223 * 359.97438 * 9 8 7
34 34 H 1.08999 * 109.47215 * 295.07447 * 14 12 10
35 35 H 1.08996 * 109.46878 * 175.07571 * 14 12 10
36 36 H 1.08997 * 109.46791 * 55.07504 * 14 12 10
37 37 H 0.97001 * 120.00027 * 179.97438 * 18 17 15
38 38 H 1.08000 * 120.41558 * 179.70272 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2690 2.0901 1.1912
5 6 2.7299 3.3921 1.1520
6 7 2.9449 3.9972 0.0001
7 6 2.7309 3.3920 -1.1517
8 6 2.9931 4.1284 -2.4401
9 7 1.8157 4.9243 -2.7960
10 6 1.8214 5.6715 -3.9175
11 8 2.8010 5.6848 -4.6325
12 6 0.6105 6.4907 -4.2833
13 1 0.4043 7.2087 -3.4896
14 6 -0.5958 5.5664 -4.4611
15 6 0.8726 7.2270 -5.5718
16 1 1.4683 6.7660 -6.3457
17 6 0.3521 8.4895 -5.7625
18 7 0.4987 9.0929 -6.9219
19 14 -0.5615 9.3427 -4.3744
20 1 0.4131 10.0291 -3.4889
21 1 -1.5034 10.3407 -4.9416
22 1 -1.3203 8.3362 -3.5891
23 6 2.2638 2.0916 -1.1909
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3632 0.5139 0.8901
26 1 -0.3633 0.5139 -0.8900
27 1 1.8933 -0.5139 -0.8900
28 1 1.8933 -0.5139 0.8900
29 1 2.0961 1.5995 2.1377
30 1 2.9163 3.9204 2.0753
31 1 3.1995 3.4103 -3.2335
32 1 3.8522 4.7872 -2.3137
33 1 1.0321 4.9135 -2.2244
34 1 -0.4254 4.9060 -5.3113
35 1 -1.4891 6.1651 -4.6393
36 1 -0.7323 4.9697 -3.5592
37 1 0.1322 9.9809 -7.0562
38 1 2.0860 1.6028 -2.1374
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597612409.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:18:25
Heat of formation + Delta-G solvation = -44.568161 kcal
Electronic energy + Delta-G solvation = -19042.183158 eV
Core-core repulsion = 16075.888477 eV
Total energy + Delta-G solvation = -2966.294681 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.46558 -40.45293 -36.39283 -35.64346 -35.48363 -33.47926 -32.22099 -31.24199
-27.91959 -27.19843 -25.29819 -24.35253 -23.59937 -21.61556 -21.03823 -19.14026
-18.07231 -17.72725 -17.13466 -16.97025 -16.31334 -16.04459 -15.94341 -15.05644
-15.03098 -14.60050 -14.47070 -14.40615 -14.18141 -13.95221 -13.63821 -13.25266
-13.08900 -12.94287 -12.69328 -12.58894 -12.32497 -12.14113 -11.79450 -11.75460
-11.26379 -10.76581 -10.63066 -10.49759 -10.39486 -10.05585 -9.98641 -8.27374
-6.33662 0.03820 0.29475 1.35292 1.38944 1.48406 1.87149 2.29057
2.35331 2.89961 3.10525 3.20905 3.57291 3.78081 4.10241 4.12937
4.19821 4.28451 4.40258 4.45592 4.48311 4.53018 4.65198 4.73002
4.78718 4.82471 4.86065 5.01272 5.07446 5.13071 5.16099 5.38598
5.44097 5.46553 5.49367 5.57780 5.75771 6.25111 6.62811 6.81932
7.02313 7.27414 7.47434 8.90606
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.028325 B = 0.004177 C = 0.004125
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.278245 B = 6701.481890 C = 6786.613947
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.084 4.084
3 C -0.040 4.040
4 C -0.159 4.159
5 C 0.091 3.909
6 N -0.508 5.508
7 C 0.101 3.899
8 C 0.173 3.827
9 N -0.717 5.717
10 C 0.521 3.479
11 O -0.581 6.581
12 C -0.008 4.008
13 H 0.069 0.931
14 C -0.125 4.125
15 C -0.507 4.507
16 H 0.025 0.975
17 C 0.007 3.993
18 N -0.951 5.951
19 Si 0.945 3.055
20 H -0.271 1.271
21 H -0.282 1.282
22 H -0.225 1.225
23 C -0.155 4.155
24 H 0.074 0.926
25 H 0.058 0.942
26 H 0.047 0.953
27 H 0.082 0.918
28 H 0.095 0.905
29 H 0.167 0.833
30 H 0.179 0.821
31 H 0.081 0.919
32 H 0.059 0.941
33 H 0.408 0.592
34 H 0.041 0.959
35 H 0.057 0.943
36 H 0.071 0.929
37 H 0.267 0.733
38 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.319 -19.820 22.318 29.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.121 4.121
3 C -0.048 4.048
4 C -0.179 4.179
5 C -0.066 4.066
6 N -0.219 5.219
7 C -0.035 4.035
8 C 0.049 3.951
9 N -0.371 5.371
10 C 0.309 3.691
11 O -0.460 6.460
12 C -0.030 4.030
13 H 0.087 0.913
14 C -0.183 4.183
15 C -0.545 4.545
16 H 0.043 0.957
17 C -0.189 4.189
18 N -0.590 5.590
19 Si 0.767 3.233
20 H -0.197 1.197
21 H -0.208 1.208
22 H -0.148 1.148
23 C -0.176 4.176
24 H 0.093 0.907
25 H 0.077 0.923
26 H 0.066 0.934
27 H 0.100 0.900
28 H 0.113 0.887
29 H 0.185 0.815
30 H 0.196 0.804
31 H 0.099 0.901
32 H 0.077 0.923
33 H 0.244 0.756
34 H 0.060 0.940
35 H 0.076 0.924
36 H 0.090 0.910
37 H 0.076 0.924
38 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -1.336 -18.808 21.680 28.733
hybrid contribution -0.448 0.160 -0.072 0.481
sum -1.784 -18.648 21.609 28.598
Atomic orbital electron populations
1.21747 0.93818 1.02855 1.02033 1.20653 0.96694 0.90125 1.04623
1.20680 0.94194 0.97601 0.92357 1.22424 0.99858 0.95720 0.99900
1.23233 0.94437 0.93087 0.95807 1.67439 1.16153 1.39289 0.98975
1.20925 0.97536 0.92441 0.92637 1.19985 0.88986 0.93975 0.92171
1.45948 1.18204 1.47639 1.25333 1.21545 0.89746 0.78433 0.79368
1.90569 1.37255 1.65489 1.52673 1.19341 0.91540 0.95269 0.96866
0.91338 1.21813 0.96883 0.98597 1.01024 1.20883 1.31886 1.01385
1.00374 0.95705 1.26050 0.96846 0.97525 0.98506 1.70069 1.47868
1.15372 1.25734 0.85780 0.79048 0.79177 0.79260 1.19695 1.20817
1.14779 1.22037 1.00379 0.94793 1.00376 0.90708 0.92312 0.93379
0.89986 0.88658 0.81548 0.80404 0.90094 0.92256 0.75572 0.94017
0.92356 0.90989 0.92366 0.83778
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.36 9.89 71.98 0.71 -0.65 16
2 C -0.08 -0.78 6.11 29.85 0.18 -0.60 16
3 C -0.04 -0.59 5.17 -19.67 -0.10 -0.70 16
4 C -0.16 -2.12 9.82 22.36 0.22 -1.90 16
5 C 0.09 1.63 11.18 84.67 0.95 2.58 16
6 N -0.51 -13.00 10.27 -183.89 -1.89 -14.89 16
7 C 0.10 2.55 6.15 42.55 0.26 2.81 16
8 C 0.17 5.37 5.98 85.63 0.51 5.88 16
9 N -0.72 -24.61 5.41 -466.80 -2.53 -27.14 16
10 C 0.52 23.92 7.15 87.66 0.63 24.54 16
11 O -0.58 -32.50 15.77 -3.04 -0.05 -32.55 16
12 C -0.01 -0.40 2.30 -12.28 -0.03 -0.43 16
13 H 0.07 3.03 5.29 -2.39 -0.01 3.02 16
14 C -0.13 -4.80 9.12 71.98 0.66 -4.14 16
15 C -0.51 -30.75 8.36 25.60 0.21 -30.54 16
16 H 0.02 1.75 7.61 -2.91 -0.02 1.73 16
17 C 0.01 0.44 5.47 84.66 0.46 0.90 16
18 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16
19 Si 0.95 43.50 26.99 68.60 1.85 45.35 16
20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16
21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
22 H -0.23 -8.88 6.82 99.48 0.68 -8.20 16
23 C -0.16 -3.03 9.43 22.36 0.21 -2.82 16
24 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
26 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16
27 H 0.08 0.72 8.10 -2.38 -0.02 0.70 16
28 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16
29 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16
30 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16
31 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16
32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
33 H 0.41 11.72 7.82 -92.71 -0.73 11.00 16
34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
36 H 0.07 2.08 7.43 -2.39 -0.02 2.06 16
37 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16
38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16
Total: -1.00 -80.49 323.30 2.86 -77.63
By element:
Atomic # 1 Polarization: 17.70 SS G_CDS: 0.30 Total: 18.00 kcal
Atomic # 6 Polarization: -9.93 SS G_CDS: 4.88 Total: -5.06 kcal
Atomic # 7 Polarization: -99.26 SS G_CDS: -4.12 Total: -103.38 kcal
Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.55 kcal
Atomic # 14 Polarization: 43.50 SS G_CDS: 1.85 Total: 45.35 kcal
Total: -80.49 2.86 -77.63 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597612409.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.059 kcal
(2) G-P(sol) polarization free energy of solvation -80.490 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.431 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.627 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.568 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds