Wall clock time and date at job start Mon Mar 30 2020 04:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47074 * 2 1 4 4 C 1.38669 * 120.79233 * 90.00285 * 3 2 1 5 5 C 1.38178 * 119.16723 * 179.97438 * 4 3 2 6 6 N 1.31885 * 120.76228 * 359.97438 * 5 4 3 7 7 C 1.31853 * 121.72813 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.61948 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47329 * 275.00497 * 8 7 6 10 10 C 1.34770 * 120.00284 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99833 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00307 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.47034 * 60.00225 * 12 10 9 14 14 C 1.53005 * 109.47012 * 299.99943 * 12 10 9 15 15 C 1.50704 * 109.47187 * 180.02562 * 12 10 9 16 16 H 1.07994 * 120.00471 * 35.09752 * 15 12 10 17 17 C 1.37881 * 119.99643 * 215.10918 * 15 12 10 18 18 N 1.31516 * 119.99696 * 184.90661 * 17 15 12 19 19 Si 1.86799 * 120.00269 * 4.89906 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.82446 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.82741 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.82915 * 19 17 15 23 23 C 1.38232 * 120.76218 * 0.28147 * 7 6 5 24 24 H 1.08999 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46439 * 299.99952 * 1 2 3 26 26 H 1.09000 * 109.46972 * 59.99822 * 1 2 3 27 27 H 1.09004 * 109.46876 * 239.99740 * 2 1 3 28 28 H 1.09000 * 109.46972 * 120.00177 * 2 1 3 29 29 H 1.08002 * 120.41510 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.62226 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47413 * 155.00301 * 8 7 6 32 32 H 1.08997 * 109.47193 * 35.00295 * 8 7 6 33 33 H 0.97000 * 120.00223 * 359.97438 * 9 8 7 34 34 H 1.08999 * 109.47215 * 295.07447 * 14 12 10 35 35 H 1.08996 * 109.46878 * 175.07571 * 14 12 10 36 36 H 1.08997 * 109.46791 * 55.07504 * 14 12 10 37 37 H 0.97001 * 120.00027 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.41558 * 179.70272 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2690 2.0901 1.1912 5 6 2.7299 3.3921 1.1520 6 7 2.9449 3.9972 0.0001 7 6 2.7309 3.3920 -1.1517 8 6 2.9931 4.1284 -2.4401 9 7 1.8157 4.9243 -2.7960 10 6 1.8214 5.6715 -3.9175 11 8 2.8010 5.6848 -4.6325 12 6 0.6105 6.4907 -4.2833 13 1 0.4043 7.2087 -3.4896 14 6 -0.5958 5.5664 -4.4611 15 6 0.8726 7.2270 -5.5718 16 1 1.4683 6.7660 -6.3457 17 6 0.3521 8.4895 -5.7625 18 7 0.4987 9.0929 -6.9219 19 14 -0.5615 9.3427 -4.3744 20 1 0.4131 10.0291 -3.4889 21 1 -1.5034 10.3407 -4.9416 22 1 -1.3203 8.3362 -3.5891 23 6 2.2638 2.0916 -1.1909 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0961 1.5995 2.1377 30 1 2.9163 3.9204 2.0753 31 1 3.1995 3.4103 -3.2335 32 1 3.8522 4.7872 -2.3137 33 1 1.0321 4.9135 -2.2244 34 1 -0.4254 4.9060 -5.3113 35 1 -1.4891 6.1651 -4.6393 36 1 -0.7323 4.9697 -3.5592 37 1 0.1322 9.9809 -7.0562 38 1 2.0860 1.6028 -2.1374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597612409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:25 Heat of formation + Delta-G solvation = -44.568161 kcal Electronic energy + Delta-G solvation = -19042.183158 eV Core-core repulsion = 16075.888477 eV Total energy + Delta-G solvation = -2966.294681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46558 -40.45293 -36.39283 -35.64346 -35.48363 -33.47926 -32.22099 -31.24199 -27.91959 -27.19843 -25.29819 -24.35253 -23.59937 -21.61556 -21.03823 -19.14026 -18.07231 -17.72725 -17.13466 -16.97025 -16.31334 -16.04459 -15.94341 -15.05644 -15.03098 -14.60050 -14.47070 -14.40615 -14.18141 -13.95221 -13.63821 -13.25266 -13.08900 -12.94287 -12.69328 -12.58894 -12.32497 -12.14113 -11.79450 -11.75460 -11.26379 -10.76581 -10.63066 -10.49759 -10.39486 -10.05585 -9.98641 -8.27374 -6.33662 0.03820 0.29475 1.35292 1.38944 1.48406 1.87149 2.29057 2.35331 2.89961 3.10525 3.20905 3.57291 3.78081 4.10241 4.12937 4.19821 4.28451 4.40258 4.45592 4.48311 4.53018 4.65198 4.73002 4.78718 4.82471 4.86065 5.01272 5.07446 5.13071 5.16099 5.38598 5.44097 5.46553 5.49367 5.57780 5.75771 6.25111 6.62811 6.81932 7.02313 7.27414 7.47434 8.90606 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.004177 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.278245 B = 6701.481890 C = 6786.613947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.040 4.040 4 C -0.159 4.159 5 C 0.091 3.909 6 N -0.508 5.508 7 C 0.101 3.899 8 C 0.173 3.827 9 N -0.717 5.717 10 C 0.521 3.479 11 O -0.581 6.581 12 C -0.008 4.008 13 H 0.069 0.931 14 C -0.125 4.125 15 C -0.507 4.507 16 H 0.025 0.975 17 C 0.007 3.993 18 N -0.951 5.951 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.225 1.225 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.408 0.592 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.267 0.733 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -19.820 22.318 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.048 4.048 4 C -0.179 4.179 5 C -0.066 4.066 6 N -0.219 5.219 7 C -0.035 4.035 8 C 0.049 3.951 9 N -0.371 5.371 10 C 0.309 3.691 11 O -0.460 6.460 12 C -0.030 4.030 13 H 0.087 0.913 14 C -0.183 4.183 15 C -0.545 4.545 16 H 0.043 0.957 17 C -0.189 4.189 18 N -0.590 5.590 19 Si 0.767 3.233 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.148 1.148 23 C -0.176 4.176 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.244 0.756 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.336 -18.808 21.680 28.733 hybrid contribution -0.448 0.160 -0.072 0.481 sum -1.784 -18.648 21.609 28.598 Atomic orbital electron populations 1.21747 0.93818 1.02855 1.02033 1.20653 0.96694 0.90125 1.04623 1.20680 0.94194 0.97601 0.92357 1.22424 0.99858 0.95720 0.99900 1.23233 0.94437 0.93087 0.95807 1.67439 1.16153 1.39289 0.98975 1.20925 0.97536 0.92441 0.92637 1.19985 0.88986 0.93975 0.92171 1.45948 1.18204 1.47639 1.25333 1.21545 0.89746 0.78433 0.79368 1.90569 1.37255 1.65489 1.52673 1.19341 0.91540 0.95269 0.96866 0.91338 1.21813 0.96883 0.98597 1.01024 1.20883 1.31886 1.01385 1.00374 0.95705 1.26050 0.96846 0.97525 0.98506 1.70069 1.47868 1.15372 1.25734 0.85780 0.79048 0.79177 0.79260 1.19695 1.20817 1.14779 1.22037 1.00379 0.94793 1.00376 0.90708 0.92312 0.93379 0.89986 0.88658 0.81548 0.80404 0.90094 0.92256 0.75572 0.94017 0.92356 0.90989 0.92366 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 71.98 0.71 -0.65 16 2 C -0.08 -0.78 6.11 29.85 0.18 -0.60 16 3 C -0.04 -0.59 5.17 -19.67 -0.10 -0.70 16 4 C -0.16 -2.12 9.82 22.36 0.22 -1.90 16 5 C 0.09 1.63 11.18 84.67 0.95 2.58 16 6 N -0.51 -13.00 10.27 -183.89 -1.89 -14.89 16 7 C 0.10 2.55 6.15 42.55 0.26 2.81 16 8 C 0.17 5.37 5.98 85.63 0.51 5.88 16 9 N -0.72 -24.61 5.41 -466.80 -2.53 -27.14 16 10 C 0.52 23.92 7.15 87.66 0.63 24.54 16 11 O -0.58 -32.50 15.77 -3.04 -0.05 -32.55 16 12 C -0.01 -0.40 2.30 -12.28 -0.03 -0.43 16 13 H 0.07 3.03 5.29 -2.39 -0.01 3.02 16 14 C -0.13 -4.80 9.12 71.98 0.66 -4.14 16 15 C -0.51 -30.75 8.36 25.60 0.21 -30.54 16 16 H 0.02 1.75 7.61 -2.91 -0.02 1.73 16 17 C 0.01 0.44 5.47 84.66 0.46 0.90 16 18 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 19 Si 0.95 43.50 26.99 68.60 1.85 45.35 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.23 -8.88 6.82 99.48 0.68 -8.20 16 23 C -0.16 -3.03 9.43 22.36 0.21 -2.82 16 24 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.72 8.10 -2.38 -0.02 0.70 16 28 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 29 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.41 11.72 7.82 -92.71 -0.73 11.00 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 2.08 7.43 -2.39 -0.02 2.06 16 37 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -80.49 323.30 2.86 -77.63 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.30 Total: 18.00 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.88 Total: -5.06 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -4.12 Total: -103.38 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.55 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.85 Total: 45.35 kcal Total: -80.49 2.86 -77.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.059 kcal (2) G-P(sol) polarization free energy of solvation -80.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds