Wall clock time and date at job start Mon Mar 30 2020 04:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38225 * 119.61832 * 2 1 4 4 C 1.38625 * 119.16212 * 179.70753 * 3 2 1 5 5 C 1.50706 * 120.79007 * 180.27899 * 4 3 2 6 6 C 1.38674 * 118.41820 * 0.51483 * 4 3 2 7 7 C 1.50706 * 120.41397 * 179.78683 * 6 4 3 8 8 N 1.46497 * 109.47174 * 79.71997 * 7 6 4 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 7 12 12 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 13 13 C 1.52998 * 109.47092 * 300.27576 * 11 9 8 14 14 C 1.50703 * 109.47148 * 180.28037 * 11 9 8 15 15 H 1.08001 * 120.00037 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00214 * 179.97438 * 14 11 9 17 17 N 1.31520 * 119.99609 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00201 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47001 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47188 * 120.00103 * 18 16 14 21 21 H 1.48497 * 109.47104 * 240.00206 * 18 16 14 22 22 C 1.38178 * 119.16443 * 359.50727 * 6 4 3 23 23 N 1.31853 * 119.61831 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46921 * 270.01659 * 1 2 3 25 25 H 1.08996 * 109.47243 * 30.01915 * 1 2 3 26 26 H 1.09003 * 109.46931 * 150.01901 * 1 2 3 27 27 H 1.08003 * 120.41651 * 0.02562 * 3 2 1 28 28 H 1.09007 * 109.46547 * 270.24112 * 5 4 3 29 29 H 1.09002 * 109.46980 * 30.23975 * 5 4 3 30 30 H 1.09002 * 109.46947 * 150.24651 * 5 4 3 31 31 H 1.08995 * 109.46956 * 319.71701 * 7 6 4 32 32 H 1.09001 * 109.46317 * 199.72148 * 7 6 4 33 33 H 0.97000 * 120.00580 * 0.02562 * 8 7 6 34 34 H 1.09004 * 109.47239 * 60.00118 * 13 11 9 35 35 H 1.09005 * 109.47323 * 180.02562 * 13 11 9 36 36 H 1.09006 * 109.47458 * 299.99989 * 13 11 9 37 37 H 0.97006 * 119.99301 * 180.02562 * 17 16 14 38 38 H 1.07999 * 119.61623 * 180.25579 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5763 1.1906 0.0062 5 6 4.3581 2.4791 0.0127 6 6 4.2266 -0.0342 0.0012 7 6 5.7323 -0.0986 0.0027 8 7 6.2290 0.1203 1.3634 9 6 7.5545 0.1059 1.6073 10 8 8.3360 -0.0879 0.7002 11 6 8.0658 0.3373 3.0058 12 1 7.6715 -0.4327 3.6690 13 6 7.6097 1.7136 3.4944 14 6 9.5717 0.2778 3.0064 15 1 10.1051 0.0906 2.0862 16 6 10.2685 0.4622 4.1818 17 7 9.6189 0.6895 5.3025 18 14 12.1350 0.3877 4.1827 19 1 12.6203 0.1201 2.8050 20 1 12.6819 1.6844 4.6565 21 1 12.5865 -0.7001 5.0871 22 6 3.4766 -1.1947 0.0007 23 7 2.1587 -1.1462 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6507 2.1373 0.0004 28 1 4.5474 2.7943 -1.0135 29 1 3.7851 3.2490 0.5295 30 1 5.3070 2.3257 0.5266 31 1 6.1296 0.6722 -0.6576 32 1 6.0542 -1.0791 -0.3483 33 1 5.6041 0.2749 2.0890 34 1 6.5206 1.7567 3.4940 35 1 7.9800 1.8812 4.5059 36 1 8.0041 2.4836 2.8313 37 1 10.1092 0.8197 6.1294 38 1 3.9755 -2.1526 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597751136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:40 Heat of formation + Delta-G solvation = -22.663168 kcal Electronic energy + Delta-G solvation = -19248.702897 eV Core-core repulsion = 16283.358088 eV Total energy + Delta-G solvation = -2965.344809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62347 -38.71875 -35.40662 -33.73276 -33.43793 -32.54787 -30.54621 -28.76561 -27.70512 -25.22482 -25.07634 -22.99797 -22.18554 -20.64529 -19.40982 -17.02297 -16.58985 -16.17126 -15.68433 -15.28302 -14.90062 -14.58655 -14.35257 -14.22989 -13.41272 -13.25457 -12.96330 -12.82839 -12.72286 -12.56222 -12.33962 -12.33685 -12.06794 -11.47497 -11.38414 -11.02566 -10.72444 -10.66911 -10.25637 -9.96455 -9.58676 -9.54872 -9.09967 -8.96049 -8.55943 -8.46916 -8.30547 -6.02976 -4.06027 0.91784 1.13581 3.32545 3.40105 3.47645 3.52855 3.71955 4.08485 4.18756 4.47740 4.49079 4.60955 4.76259 4.88266 5.19997 5.26045 5.30421 5.35675 5.39464 5.48185 5.50465 5.67927 5.74788 5.86952 5.98929 6.00852 6.25656 6.30950 6.60851 6.61077 6.81658 6.91650 7.02837 7.47445 7.75336 7.87826 7.99170 8.14406 8.43746 9.03583 9.22321 9.59699 11.04656 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039916 B = 0.003934 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.305202 B = 7114.971088 C = 7214.256002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.128 3.872 3 C -0.178 4.178 4 C -0.019 4.019 5 C -0.126 4.126 6 C -0.160 4.160 7 C 0.166 3.834 8 N -0.743 5.743 9 C 0.520 3.480 10 O -0.545 6.545 11 C 0.029 3.971 12 H 0.052 0.948 13 C -0.131 4.131 14 C -0.500 4.500 15 H 0.075 0.925 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.124 3.876 23 N -0.492 5.492 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.396 0.604 34 H 0.011 0.989 35 H 0.093 0.907 36 H 0.031 0.969 37 H 0.260 0.740 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.159 2.246 -8.593 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.010 4.010 3 C -0.197 4.197 4 C -0.027 4.027 5 C -0.182 4.182 6 C -0.162 4.162 7 C 0.041 3.959 8 N -0.398 5.398 9 C 0.310 3.690 10 O -0.420 6.420 11 C 0.008 3.992 12 H 0.070 0.930 13 C -0.189 4.189 14 C -0.538 4.538 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.033 4.033 23 N -0.201 5.201 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.151 0.849 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.230 0.770 34 H 0.030 0.970 35 H 0.111 0.889 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.995 1.359 -9.082 19.317 hybrid contribution 1.083 0.815 0.440 1.425 sum -15.911 2.174 -8.642 18.237 Atomic orbital electron populations 1.20703 0.88948 1.03304 1.03081 1.21305 0.96974 0.88408 0.94268 1.21832 0.94042 0.99286 1.04586 1.20286 0.93681 0.95480 0.93272 1.20951 1.00833 0.93340 1.03113 1.20907 0.97038 0.93842 1.04406 1.19925 0.87190 1.02291 0.86474 1.46387 1.08339 1.76312 1.08729 1.22015 0.80050 0.73516 0.93458 1.90538 1.55729 1.48398 1.47383 1.18884 0.97624 0.95982 0.86735 0.92998 1.21738 0.95549 0.97063 1.04595 1.21192 0.89594 1.47820 0.95203 0.90707 1.24957 0.98836 0.95138 0.95375 1.69888 1.35222 1.49633 0.98895 0.86403 0.85225 0.77470 0.78200 1.19550 1.21077 1.21055 1.22713 0.89045 0.98036 0.93527 1.67556 1.09757 1.29262 1.13568 0.90393 0.90833 0.90528 0.84887 0.90384 0.90928 0.89795 0.91033 0.91082 0.77014 0.97008 0.88851 0.95010 0.93039 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.01 0.37 -0.43 16 2 C 0.13 1.42 6.78 -82.59 -0.56 0.86 16 3 C -0.18 -1.84 9.45 -39.44 -0.37 -2.21 16 4 C -0.02 -0.22 5.92 -104.32 -0.62 -0.83 16 5 C -0.13 -1.30 9.36 36.01 0.34 -0.97 16 6 C -0.16 -2.01 5.27 -104.48 -0.55 -2.56 16 7 C 0.17 2.42 4.97 -5.19 -0.03 2.39 16 8 N -0.74 -12.67 4.86 -61.47 -0.30 -12.96 16 9 C 0.52 11.64 7.15 -10.98 -0.08 11.56 16 10 O -0.54 -14.01 15.46 5.55 0.09 -13.92 16 11 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 12 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.13 -2.98 8.86 37.16 0.33 -2.65 16 14 C -0.50 -14.14 8.37 -34.44 -0.29 -14.43 16 15 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 16 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 17 N -0.90 -25.15 11.32 55.43 0.63 -24.53 16 18 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.12 1.56 10.83 -17.55 -0.19 1.37 16 23 N -0.49 -6.37 10.27 -9.47 -0.10 -6.46 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.08 1.04 6.53 -51.93 -0.34 0.70 16 31 H 0.07 1.07 7.40 -51.93 -0.38 0.69 16 32 H 0.07 1.05 8.02 -51.93 -0.42 0.64 16 33 H 0.40 6.15 7.87 -40.82 -0.32 5.83 16 34 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 35 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.16 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -31.77 319.34 -7.34 -39.10 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.46 Total: 3.12 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.99 Total: -5.94 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.23 Total: -43.95 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.77 -7.34 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597751136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.440 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds