Wall clock time and date at job start Mon Mar 30 2020 04:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38225 * 119.61832 * 2 1 4 4 C 1.38625 * 119.16212 * 179.70753 * 3 2 1 5 5 C 1.50706 * 120.79007 * 180.27899 * 4 3 2 6 6 C 1.38674 * 118.41820 * 0.51483 * 4 3 2 7 7 C 1.50706 * 120.41397 * 179.78683 * 6 4 3 8 8 N 1.46497 * 109.47174 * 79.71997 * 7 6 4 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 7 12 12 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 13 13 C 1.52998 * 109.47092 * 300.27576 * 11 9 8 14 14 C 1.50703 * 109.47148 * 180.28037 * 11 9 8 15 15 H 1.08001 * 120.00037 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00214 * 179.97438 * 14 11 9 17 17 N 1.31520 * 119.99609 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00201 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47001 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47188 * 120.00103 * 18 16 14 21 21 H 1.48497 * 109.47104 * 240.00206 * 18 16 14 22 22 C 1.38178 * 119.16443 * 359.50727 * 6 4 3 23 23 N 1.31853 * 119.61831 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46921 * 270.01659 * 1 2 3 25 25 H 1.08996 * 109.47243 * 30.01915 * 1 2 3 26 26 H 1.09003 * 109.46931 * 150.01901 * 1 2 3 27 27 H 1.08003 * 120.41651 * 0.02562 * 3 2 1 28 28 H 1.09007 * 109.46547 * 270.24112 * 5 4 3 29 29 H 1.09002 * 109.46980 * 30.23975 * 5 4 3 30 30 H 1.09002 * 109.46947 * 150.24651 * 5 4 3 31 31 H 1.08995 * 109.46956 * 319.71701 * 7 6 4 32 32 H 1.09001 * 109.46317 * 199.72148 * 7 6 4 33 33 H 0.97000 * 120.00580 * 0.02562 * 8 7 6 34 34 H 1.09004 * 109.47239 * 60.00118 * 13 11 9 35 35 H 1.09005 * 109.47323 * 180.02562 * 13 11 9 36 36 H 1.09006 * 109.47458 * 299.99989 * 13 11 9 37 37 H 0.97006 * 119.99301 * 180.02562 * 17 16 14 38 38 H 1.07999 * 119.61623 * 180.25579 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5763 1.1906 0.0062 5 6 4.3581 2.4791 0.0127 6 6 4.2266 -0.0342 0.0012 7 6 5.7323 -0.0986 0.0027 8 7 6.2290 0.1203 1.3634 9 6 7.5545 0.1059 1.6073 10 8 8.3360 -0.0879 0.7002 11 6 8.0658 0.3373 3.0058 12 1 7.6715 -0.4327 3.6690 13 6 7.6097 1.7136 3.4944 14 6 9.5717 0.2778 3.0064 15 1 10.1051 0.0906 2.0862 16 6 10.2685 0.4622 4.1818 17 7 9.6189 0.6895 5.3025 18 14 12.1350 0.3877 4.1827 19 1 12.6203 0.1201 2.8050 20 1 12.6819 1.6844 4.6565 21 1 12.5865 -0.7001 5.0871 22 6 3.4766 -1.1947 0.0007 23 7 2.1587 -1.1462 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6507 2.1373 0.0004 28 1 4.5474 2.7943 -1.0135 29 1 3.7851 3.2490 0.5295 30 1 5.3070 2.3257 0.5266 31 1 6.1296 0.6722 -0.6576 32 1 6.0542 -1.0791 -0.3483 33 1 5.6041 0.2749 2.0890 34 1 6.5206 1.7567 3.4940 35 1 7.9800 1.8812 4.5059 36 1 8.0041 2.4836 2.8313 37 1 10.1092 0.8197 6.1294 38 1 3.9755 -2.1526 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597751136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:39 Heat of formation + Delta-G solvation = -42.928223 kcal Electronic energy + Delta-G solvation = -19249.581656 eV Core-core repulsion = 16283.358088 eV Total energy + Delta-G solvation = -2966.223568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.57265 -40.40202 -36.63041 -35.75750 -34.52999 -33.61474 -32.41585 -29.83680 -28.50829 -27.20490 -26.28695 -24.25490 -23.61292 -21.56517 -21.13112 -18.41184 -18.02319 -17.89444 -16.92400 -16.65177 -16.32479 -15.96994 -15.68487 -15.45693 -14.69043 -14.60041 -14.13675 -14.07331 -13.91199 -13.59546 -13.43085 -13.22070 -13.07236 -12.99414 -12.96259 -12.67559 -12.58524 -12.28408 -12.18014 -12.02030 -11.02926 -10.70986 -10.49517 -10.45018 -10.29290 -10.00390 -9.78245 -8.14879 -6.25219 0.01230 0.25901 1.39799 1.41971 1.55395 1.92492 2.33899 2.49859 2.87881 3.14812 3.33940 3.64893 3.69601 3.85244 3.95899 4.30183 4.39167 4.54991 4.55486 4.68868 4.70728 4.71788 4.75937 4.82023 4.89993 4.95062 5.01971 5.06913 5.17057 5.24409 5.39840 5.50073 5.52422 5.75143 5.76806 5.94562 6.21547 6.70975 6.85808 7.00408 7.40057 7.52623 8.91064 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039916 B = 0.003934 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.305202 B = 7114.971088 C = 7214.256002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.121 3.879 3 C -0.174 4.174 4 C -0.022 4.022 5 C -0.123 4.123 6 C -0.170 4.170 7 C 0.171 3.829 8 N -0.720 5.720 9 C 0.524 3.476 10 O -0.584 6.584 11 C 0.023 3.977 12 H 0.039 0.961 13 C -0.117 4.117 14 C -0.528 4.528 15 H 0.049 0.951 16 C 0.019 3.981 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.279 1.279 20 H -0.274 1.274 21 H -0.275 1.275 22 C 0.116 3.884 23 N -0.515 5.515 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.406 0.594 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.924 3.295 -8.698 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.017 4.017 3 C -0.193 4.193 4 C -0.030 4.030 5 C -0.180 4.180 6 C -0.173 4.173 7 C 0.048 3.952 8 N -0.373 5.373 9 C 0.313 3.687 10 O -0.464 6.464 11 C 0.002 3.998 12 H 0.057 0.943 13 C -0.175 4.175 14 C -0.566 4.566 15 H 0.068 0.932 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.041 4.041 23 N -0.225 5.225 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.092 0.908 27 H 0.182 0.818 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.242 0.758 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.815 2.412 -9.172 21.071 hybrid contribution 1.507 0.487 0.456 1.648 sum -17.309 2.899 -8.717 19.595 Atomic orbital electron populations 1.20808 0.86606 1.04442 1.04007 1.21933 0.98632 0.88188 0.92898 1.22144 0.93507 1.00360 1.03329 1.20493 0.94503 0.95306 0.92704 1.20956 0.99847 0.93385 1.03795 1.20666 0.95379 0.94718 1.06490 1.19930 0.88837 1.01951 0.84509 1.46071 1.06605 1.74204 1.10406 1.21517 0.81498 0.73571 0.92101 1.90516 1.57206 1.50605 1.48063 1.18822 0.96089 0.96707 0.88212 0.94316 1.21536 0.97852 0.95483 1.02665 1.21327 0.91729 1.48975 0.94564 0.93249 1.25601 1.02744 0.94643 0.95021 1.69965 1.36567 1.49399 0.99168 0.85540 0.80538 0.78051 0.77746 1.20391 1.19904 1.20083 1.22831 0.89328 0.98352 0.93603 1.67612 1.09755 1.30544 1.14620 0.89414 0.88343 0.90799 0.81799 0.89330 0.88871 0.92016 0.91244 0.91468 0.75823 0.93204 0.91189 0.95561 0.92639 0.82080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.17 71.24 0.72 -0.54 16 2 C 0.12 2.38 6.78 42.55 0.29 2.66 16 3 C -0.17 -3.05 9.45 22.36 0.21 -2.84 16 4 C -0.02 -0.45 5.92 -19.67 -0.12 -0.57 16 5 C -0.12 -2.26 9.36 71.24 0.67 -1.60 16 6 C -0.17 -4.10 5.27 -19.77 -0.10 -4.21 16 7 C 0.17 4.95 4.97 85.64 0.43 5.38 16 8 N -0.72 -24.28 4.86 -466.79 -2.27 -26.55 16 9 C 0.52 23.79 7.15 87.66 0.63 24.42 16 10 O -0.58 -30.86 15.46 -3.04 -0.05 -30.91 16 11 C 0.02 1.15 2.64 -12.29 -0.03 1.12 16 12 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 13 C -0.12 -5.28 8.86 71.98 0.64 -4.64 16 14 C -0.53 -30.58 8.37 25.60 0.21 -30.37 16 15 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 16 C 0.02 1.06 5.30 84.65 0.45 1.51 16 17 N -0.91 -51.19 11.32 21.45 0.24 -50.95 16 18 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.12 2.82 10.83 84.67 0.92 3.74 16 23 N -0.51 -12.64 10.27 -183.89 -1.89 -14.53 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.10 0.74 8.08 -2.39 -0.02 0.72 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 28 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16 30 H 0.06 1.42 6.53 -2.39 -0.02 1.41 16 31 H 0.07 2.06 7.40 -2.39 -0.02 2.05 16 32 H 0.07 2.01 8.02 -2.39 -0.02 1.99 16 33 H 0.41 12.15 7.87 -92.71 -0.73 11.42 16 34 H 0.05 1.80 7.56 -2.38 -0.02 1.78 16 35 H 0.07 3.51 6.07 -2.38 -0.01 3.49 16 36 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 38 H 0.16 3.56 8.04 -2.91 -0.02 3.54 16 Total: -1.00 -69.03 319.34 3.31 -65.72 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.33 Total: 16.16 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.91 Total: -5.94 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -3.91 Total: -92.03 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.03 3.31 -65.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597751136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.793 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds