Wall clock time and date at job start Mon Mar 30 2020 04:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38669 * 120.41889 * 2 1 4 4 C 1.38634 * 118.41950 * 179.71288 * 3 2 1 5 5 C 1.38228 * 119.16144 * 0.54908 * 4 3 2 6 6 C 1.50694 * 119.61764 * 179.71569 * 5 4 3 7 7 N 1.46499 * 109.47550 * 94.73087 * 6 5 4 8 8 C 1.34777 * 120.00199 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 12 12 C 1.53000 * 109.47245 * 59.72201 * 10 8 7 13 13 C 1.50700 * 109.46869 * 179.72354 * 10 8 7 14 14 H 1.07997 * 120.00357 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99656 * 179.97438 * 13 10 8 16 16 N 1.31514 * 119.99993 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99954 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.47186 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47137 * 120.00134 * 17 15 13 20 20 H 1.48499 * 109.47678 * 240.00198 * 17 15 13 21 21 N 1.31853 * 120.75816 * 359.43839 * 5 4 3 22 22 C 1.31880 * 121.73239 * 0.27429 * 21 5 4 23 23 C 1.50703 * 119.61886 * 179.97438 * 22 21 5 24 24 H 1.08998 * 109.47090 * 270.01800 * 1 2 3 25 25 H 1.09000 * 109.47482 * 30.02529 * 1 2 3 26 26 H 1.09008 * 109.46980 * 150.01934 * 1 2 3 27 27 H 1.07998 * 120.79029 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.41908 * 180.28705 * 4 3 2 29 29 H 1.08998 * 109.47333 * 334.72681 * 6 5 4 30 30 H 1.09002 * 109.47271 * 214.73115 * 6 5 4 31 31 H 0.97000 * 119.99484 * 359.97438 * 7 6 5 32 32 H 1.09001 * 109.46739 * 299.99817 * 12 10 8 33 33 H 1.08996 * 109.46783 * 59.99559 * 12 10 8 34 34 H 1.08994 * 109.47175 * 180.02562 * 12 10 8 35 35 H 0.97009 * 119.99880 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.46600 * 90.00695 * 23 22 21 37 37 H 1.09002 * 109.46995 * 209.99992 * 23 22 21 38 38 H 1.08996 * 109.47084 * 330.00185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1474 0.0061 5 6 4.2256 -0.0824 0.0004 6 6 5.7312 -0.1469 0.0004 7 7 6.2139 -0.2882 1.3764 8 6 7.5369 -0.3658 1.6217 9 8 8.3277 -0.3192 0.7034 10 6 8.0332 -0.5174 3.0366 11 1 7.7091 0.3383 3.6289 12 6 7.4636 -1.8019 3.6420 13 6 9.5386 -0.5868 3.0361 14 1 10.0816 -0.5275 2.1045 15 6 10.2226 -0.7260 4.2251 16 7 9.5613 -0.7986 5.3596 17 14 12.0886 -0.8127 4.2245 18 1 12.5885 -0.7094 2.8299 19 1 12.6365 0.3078 5.0305 20 1 12.5244 -2.1047 4.8126 21 7 3.5254 -1.1996 0.0004 22 6 2.2066 -1.1917 0.0004 23 6 1.4539 -2.4973 -0.0002 24 1 -0.3633 0.0003 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6889 2.1423 0.0004 28 1 4.1735 2.0591 0.0110 29 1 6.1341 0.7681 -0.4338 30 1 6.0582 -1.0034 -0.5891 31 1 5.5814 -0.3251 2.1108 32 1 6.3748 -1.7516 3.6424 33 1 7.7876 -2.6575 3.0496 34 1 7.8222 -1.9113 4.6655 35 1 10.0426 -0.8962 6.1962 36 1 1.2724 -2.8124 1.0274 37 1 0.5014 -2.3673 -0.5140 38 1 2.0435 -3.2563 -0.5144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597761575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:22 Heat of formation + Delta-G solvation = -19.138144 kcal Electronic energy + Delta-G solvation = -19018.989863 eV Core-core repulsion = 16053.797910 eV Total energy + Delta-G solvation = -2965.191953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62721 -38.64762 -35.19195 -33.67469 -33.26270 -32.94548 -30.50438 -28.61924 -28.18868 -25.09869 -24.84976 -22.69281 -22.19870 -21.17219 -19.34595 -16.93264 -16.60363 -16.13983 -15.54575 -15.30162 -14.80126 -14.70891 -14.35856 -14.16088 -13.48962 -13.16053 -13.02291 -12.88439 -12.80296 -12.59677 -12.29076 -12.17711 -12.06397 -11.44304 -11.39339 -10.97924 -10.65944 -10.62517 -10.19441 -9.92275 -9.83899 -9.51357 -8.96419 -8.90500 -8.50696 -8.39793 -8.25972 -5.98707 -4.01517 0.88844 1.14389 3.35608 3.42760 3.46268 3.52704 3.78871 4.01013 4.24167 4.49999 4.52735 4.57420 4.69942 4.76395 5.12650 5.22346 5.33304 5.34599 5.40678 5.44486 5.46846 5.64708 5.69830 5.84189 5.96674 6.03971 6.16176 6.33463 6.58473 6.69281 6.90474 6.98804 7.09369 7.53583 7.81097 7.93059 8.04122 8.19957 8.49644 9.08090 9.28817 9.63885 11.08999 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039681 B = 0.003736 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.451732 B = 7492.840898 C = 7685.308797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.141 4.141 3 C -0.076 4.076 4 C -0.158 4.158 5 C 0.118 3.882 6 C 0.172 3.828 7 N -0.739 5.739 8 C 0.521 3.479 9 O -0.546 6.546 10 C 0.030 3.970 11 H 0.052 0.948 12 C -0.131 4.131 13 C -0.499 4.499 14 H 0.075 0.925 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.285 1.285 21 N -0.466 5.466 22 C 0.126 3.874 23 C -0.107 4.107 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.396 0.604 32 H 0.011 0.989 33 H 0.031 0.969 34 H 0.092 0.908 35 H 0.259 0.741 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.332 2.007 -8.653 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 C -0.101 4.101 4 C -0.178 4.178 5 C -0.021 4.021 6 C 0.047 3.953 7 N -0.394 5.394 8 C 0.311 3.689 9 O -0.422 6.422 10 C 0.009 3.991 11 H 0.070 0.930 12 C -0.189 4.189 13 C -0.537 4.537 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.727 3.273 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.211 1.211 21 N -0.175 5.175 22 C -0.013 4.013 23 C -0.164 4.164 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.230 0.770 32 H 0.030 0.970 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.234 1.219 -9.155 21.336 hybrid contribution 0.166 0.845 0.452 0.973 sum -19.068 2.064 -8.702 21.062 Atomic orbital electron populations 1.20800 0.90335 1.03061 1.02643 1.20728 0.97448 0.93695 1.02400 1.21463 0.93928 0.98061 0.96682 1.22026 0.95111 0.99170 1.01494 1.21313 0.96384 0.88403 0.95953 1.19965 0.85881 1.02865 0.86579 1.46245 1.08406 1.77832 1.06895 1.22000 0.79955 0.73014 0.93947 1.90531 1.54976 1.49381 1.47279 1.18880 0.97456 0.96602 0.86202 0.93028 1.21729 0.95336 0.97336 1.04526 1.21203 0.89611 1.49003 0.93889 0.90681 1.24957 0.98789 0.95203 0.95388 1.69891 1.35159 1.51022 0.97625 0.86401 0.85255 0.77414 0.78203 1.19539 1.21099 1.21074 1.67367 1.07494 1.31183 1.11496 1.21160 0.89536 0.95073 0.95486 1.20784 0.99142 0.93233 1.03230 0.90834 0.91480 0.90838 0.84786 0.84460 0.90526 0.90403 0.77041 0.96979 0.94945 0.88895 0.93076 0.90270 0.90519 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.62 36.00 0.35 -0.36 16 2 C -0.14 -1.39 5.90 -104.48 -0.62 -2.00 16 3 C -0.08 -0.74 9.86 -39.28 -0.39 -1.13 16 4 C -0.16 -1.83 9.72 -39.44 -0.38 -2.21 16 5 C 0.12 1.66 6.15 -82.59 -0.51 1.15 16 6 C 0.17 2.79 5.98 -5.20 -0.03 2.76 16 7 N -0.74 -13.82 5.44 -61.47 -0.33 -14.15 16 8 C 0.52 12.33 7.15 -10.98 -0.08 12.25 16 9 O -0.55 -14.62 15.46 5.55 0.09 -14.54 16 10 C 0.03 0.76 2.64 -92.92 -0.25 0.52 16 11 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 12 C -0.13 -3.14 8.86 37.16 0.33 -2.82 16 13 C -0.50 -14.46 8.37 -34.44 -0.29 -14.75 16 14 H 0.08 2.30 6.75 -52.49 -0.35 1.94 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 16 N -0.90 -25.63 11.32 55.43 0.63 -25.00 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 N -0.47 -6.79 10.19 -5.74 -0.06 -6.85 16 22 C 0.13 1.48 6.78 -82.59 -0.56 0.92 16 23 C -0.11 -0.93 9.77 36.01 0.35 -0.58 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 26 H 0.07 0.39 5.96 -51.92 -0.31 0.08 16 27 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.40 6.80 7.87 -40.82 -0.32 6.48 16 32 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.48 5.94 -51.93 -0.31 0.17 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -32.99 318.94 -7.41 -40.40 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.36 Total: 2.93 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.16 Total: -4.73 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.23 Total: -46.00 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.09 Total: -14.54 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.99 -7.41 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.263 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds