Wall clock time and date at job start Mon Mar 30 2020 04:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38669 * 120.41889 * 2 1 4 4 C 1.38634 * 118.41950 * 179.71288 * 3 2 1 5 5 C 1.38228 * 119.16144 * 0.54908 * 4 3 2 6 6 C 1.50694 * 119.61764 * 179.71569 * 5 4 3 7 7 N 1.46499 * 109.47550 * 94.73087 * 6 5 4 8 8 C 1.34777 * 120.00199 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 12 12 C 1.53000 * 109.47245 * 59.72201 * 10 8 7 13 13 C 1.50700 * 109.46869 * 179.72354 * 10 8 7 14 14 H 1.07997 * 120.00357 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99656 * 179.97438 * 13 10 8 16 16 N 1.31514 * 119.99993 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99954 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.47186 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47137 * 120.00134 * 17 15 13 20 20 H 1.48499 * 109.47678 * 240.00198 * 17 15 13 21 21 N 1.31853 * 120.75816 * 359.43839 * 5 4 3 22 22 C 1.31880 * 121.73239 * 0.27429 * 21 5 4 23 23 C 1.50703 * 119.61886 * 179.97438 * 22 21 5 24 24 H 1.08998 * 109.47090 * 270.01800 * 1 2 3 25 25 H 1.09000 * 109.47482 * 30.02529 * 1 2 3 26 26 H 1.09008 * 109.46980 * 150.01934 * 1 2 3 27 27 H 1.07998 * 120.79029 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.41908 * 180.28705 * 4 3 2 29 29 H 1.08998 * 109.47333 * 334.72681 * 6 5 4 30 30 H 1.09002 * 109.47271 * 214.73115 * 6 5 4 31 31 H 0.97000 * 119.99484 * 359.97438 * 7 6 5 32 32 H 1.09001 * 109.46739 * 299.99817 * 12 10 8 33 33 H 1.08996 * 109.46783 * 59.99559 * 12 10 8 34 34 H 1.08994 * 109.47175 * 180.02562 * 12 10 8 35 35 H 0.97009 * 119.99880 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.46600 * 90.00695 * 23 22 21 37 37 H 1.09002 * 109.46995 * 209.99992 * 23 22 21 38 38 H 1.08996 * 109.47084 * 330.00185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1474 0.0061 5 6 4.2256 -0.0824 0.0004 6 6 5.7312 -0.1469 0.0004 7 7 6.2139 -0.2882 1.3764 8 6 7.5369 -0.3658 1.6217 9 8 8.3277 -0.3192 0.7034 10 6 8.0332 -0.5174 3.0366 11 1 7.7091 0.3383 3.6289 12 6 7.4636 -1.8019 3.6420 13 6 9.5386 -0.5868 3.0361 14 1 10.0816 -0.5275 2.1045 15 6 10.2226 -0.7260 4.2251 16 7 9.5613 -0.7986 5.3596 17 14 12.0886 -0.8127 4.2245 18 1 12.5885 -0.7094 2.8299 19 1 12.6365 0.3078 5.0305 20 1 12.5244 -2.1047 4.8126 21 7 3.5254 -1.1996 0.0004 22 6 2.2066 -1.1917 0.0004 23 6 1.4539 -2.4973 -0.0002 24 1 -0.3633 0.0003 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6889 2.1423 0.0004 28 1 4.1735 2.0591 0.0110 29 1 6.1341 0.7681 -0.4338 30 1 6.0582 -1.0034 -0.5891 31 1 5.5814 -0.3251 2.1108 32 1 6.3748 -1.7516 3.6424 33 1 7.7876 -2.6575 3.0496 34 1 7.8222 -1.9113 4.6655 35 1 10.0426 -0.8962 6.1962 36 1 1.2724 -2.8124 1.0274 37 1 0.5014 -2.3673 -0.5140 38 1 2.0435 -3.2563 -0.5144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597761575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:22 Heat of formation + Delta-G solvation = -41.110218 kcal Electronic energy + Delta-G solvation = -19019.942644 eV Core-core repulsion = 16053.797910 eV Total energy + Delta-G solvation = -2966.144733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55312 -40.44416 -36.44981 -35.77170 -34.36574 -33.93737 -32.49730 -29.45927 -29.22797 -27.21670 -25.93515 -24.15677 -23.35402 -22.16658 -21.16314 -18.47525 -18.07643 -17.69237 -17.00704 -16.67584 -16.24068 -15.93054 -15.66085 -15.50498 -14.76639 -14.63539 -14.26554 -13.78666 -13.74080 -13.64729 -13.56110 -13.32007 -13.14036 -12.97838 -12.85187 -12.68027 -12.60616 -12.21856 -12.13622 -12.02327 -11.04848 -10.70025 -10.64230 -10.45124 -10.34889 -10.04561 -9.63912 -8.15487 -6.26146 -0.00111 0.31196 1.39976 1.41607 1.55668 1.89050 2.28144 2.47370 2.89441 3.12601 3.14165 3.65096 3.83181 3.99698 4.01927 4.22210 4.35514 4.50169 4.63899 4.66259 4.71349 4.73429 4.75842 4.83120 4.92373 4.92867 4.99344 5.13924 5.18706 5.27424 5.37310 5.46998 5.48105 5.72973 5.80011 5.91331 6.18620 6.67605 6.84086 7.02802 7.38183 7.49348 8.90813 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039681 B = 0.003736 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.451732 B = 7492.840898 C = 7685.308797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C -0.075 4.075 4 C -0.158 4.158 5 C 0.092 3.908 6 C 0.176 3.824 7 N -0.718 5.718 8 C 0.523 3.477 9 O -0.585 6.585 10 C 0.025 3.975 11 H 0.043 0.957 12 C -0.117 4.117 13 C -0.529 4.529 14 H 0.050 0.950 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.958 3.042 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.274 1.274 21 N -0.500 5.500 22 C 0.105 3.895 23 C -0.105 4.105 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.405 0.595 32 H 0.044 0.956 33 H 0.021 0.979 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.693 2.637 -8.567 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.134 4.134 3 C -0.101 4.101 4 C -0.178 4.178 5 C -0.045 4.045 6 C 0.052 3.948 7 N -0.371 5.371 8 C 0.313 3.687 9 O -0.464 6.464 10 C 0.004 3.996 11 H 0.061 0.939 12 C -0.175 4.175 13 C -0.567 4.567 14 H 0.068 0.932 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.784 3.216 18 H -0.204 1.204 19 H -0.198 1.198 20 H -0.199 1.199 21 N -0.211 5.211 22 C -0.034 4.034 23 C -0.162 4.162 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.185 0.815 28 H 0.168 0.832 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.241 0.759 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.649 1.850 -9.053 23.539 hybrid contribution 0.752 0.659 0.410 1.081 sum -20.897 2.509 -8.644 22.753 Atomic orbital electron populations 1.20905 0.87474 1.04594 1.03743 1.21174 0.99448 0.92904 0.99863 1.21881 0.93172 0.99608 0.95431 1.22183 0.96318 0.98504 1.00831 1.20945 0.94801 0.89633 0.99097 1.19971 0.88203 1.02261 0.84384 1.45963 1.06818 1.75695 1.08666 1.21583 0.81316 0.73110 0.92736 1.90506 1.56400 1.51558 1.47937 1.18816 0.96203 0.96936 0.87653 0.93891 1.21537 0.97272 0.96017 1.02711 1.21319 0.91553 1.50550 0.93302 0.93212 1.25626 1.02925 0.94539 0.94952 1.69963 1.36634 1.50573 0.97955 0.85502 0.80244 0.78107 0.77781 1.20397 1.19807 1.19931 1.67257 1.09255 1.31864 1.12690 1.21696 0.88846 0.97131 0.95687 1.20868 0.99845 0.91623 1.03848 0.89716 0.89775 0.89573 0.81458 0.83214 0.89901 0.92307 0.75944 0.93664 0.95954 0.90850 0.92563 0.89670 0.87682 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.62 71.23 0.69 -0.26 16 2 C -0.13 -2.20 5.90 -19.78 -0.12 -2.32 16 3 C -0.08 -1.25 9.86 22.47 0.22 -1.03 16 4 C -0.16 -3.40 9.72 22.36 0.22 -3.19 16 5 C 0.09 2.58 6.15 42.55 0.26 2.84 16 6 C 0.18 5.84 5.98 85.63 0.51 6.35 16 7 N -0.72 -27.16 5.44 -466.79 -2.54 -29.70 16 8 C 0.52 25.40 7.15 87.66 0.63 26.02 16 9 O -0.58 -32.49 15.46 -3.04 -0.05 -32.54 16 10 C 0.03 1.32 2.64 -12.29 -0.03 1.28 16 11 H 0.04 2.31 8.14 -2.38 -0.02 2.29 16 12 C -0.12 -5.66 8.86 71.98 0.64 -5.02 16 13 C -0.53 -31.52 8.37 25.60 0.21 -31.31 16 14 H 0.05 3.17 6.75 -2.91 -0.02 3.15 16 15 C 0.02 1.06 5.30 84.65 0.45 1.51 16 16 N -0.91 -52.14 11.32 21.45 0.24 -51.90 16 17 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 18 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 N -0.50 -14.42 10.19 -172.08 -1.75 -16.18 16 22 C 0.10 2.30 6.78 42.54 0.29 2.59 16 23 C -0.10 -1.64 9.77 71.24 0.70 -0.94 16 24 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.08 0.48 8.10 -2.39 -0.02 0.47 16 26 H 0.09 0.54 5.96 -2.38 -0.01 0.53 16 27 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.08 2.62 8.04 -2.39 -0.02 2.60 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.41 13.80 7.87 -92.71 -0.73 13.07 16 32 H 0.04 1.82 7.56 -2.39 -0.02 1.80 16 33 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 35 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.10 0.98 5.94 -2.39 -0.01 0.96 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.76 318.94 2.93 -69.83 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.34 Total: 16.18 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.66 Total: -3.47 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -4.05 Total: -97.78 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.76 2.93 -69.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.721 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds