Wall clock time and date at job start Mon Mar 30 2020 04:13:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38675 * 120.41908 * 2 1
4 4 C 1.38628 * 118.41657 * 179.70919 * 3 2 1
5 5 C 1.38222 * 119.16505 * 0.54749 * 4 3 2
6 6 C 1.50697 * 119.62191 * 179.70894 * 5 4 3
7 7 N 1.46500 * 109.46896 * 94.73192 * 6 5 4
8 8 C 1.34780 * 120.00188 * 180.02562 * 7 6 5
9 9 O 1.21285 * 119.99712 * 359.97438 * 8 7 6
10 10 C 1.50699 * 120.00249 * 179.97438 * 8 7 6
11 11 H 1.09002 * 109.46959 * 59.99905 * 10 8 7
12 12 C 1.52997 * 109.47078 * 299.99993 * 10 8 7
13 13 C 1.50697 * 109.46956 * 179.97438 * 10 8 7
14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 8
15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 8
16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10
17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10
18 18 H 1.48506 * 109.46872 * 59.99743 * 17 15 13
19 19 H 1.48503 * 109.47008 * 179.97438 * 17 15 13
20 20 H 1.48494 * 109.46914 * 299.99916 * 17 15 13
21 21 N 1.31862 * 120.76134 * 359.44127 * 5 4 3
22 22 C 1.31888 * 121.72567 * 0.26863 * 21 5 4
23 23 C 1.50696 * 119.61726 * 180.02562 * 22 21 5
24 24 H 1.08997 * 109.47305 * 270.02589 * 1 2 3
25 25 H 1.09009 * 109.46855 * 30.02559 * 1 2 3
26 26 H 1.09000 * 109.47282 * 150.01811 * 1 2 3
27 27 H 1.08002 * 120.78927 * 0.02562 * 3 2 1
28 28 H 1.07999 * 120.41740 * 180.28064 * 4 3 2
29 29 H 1.09002 * 109.47120 * 334.73369 * 6 5 4
30 30 H 1.09000 * 109.47374 * 214.73273 * 6 5 4
31 31 H 0.96998 * 119.99994 * 359.97438 * 7 6 5
32 32 H 1.09002 * 109.47153 * 299.99793 * 12 10 8
33 33 H 1.09001 * 109.46832 * 179.97438 * 12 10 8
34 34 H 1.09004 * 109.47261 * 59.99965 * 12 10 8
35 35 H 0.96999 * 120.00480 * 179.97438 * 16 15 13
36 36 H 1.09006 * 109.46799 * 90.00352 * 23 22 21
37 37 H 1.08997 * 109.47285 * 209.99828 * 23 22 21
38 38 H 1.08995 * 109.47625 * 330.00451 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2091 1.1959 0.0000
4 6 3.5945 1.1474 0.0062
5 6 4.2256 -0.0823 0.0006
6 6 5.7312 -0.1469 0.0006
7 7 6.2139 -0.2881 1.3765
8 6 7.5368 -0.3659 1.6220
9 8 8.3277 -0.3194 0.7037
10 6 8.0334 -0.5105 3.0375
11 1 7.6307 -1.4255 3.4720
12 6 7.5741 0.6920 3.8644
13 6 9.5390 -0.5753 3.0375
14 1 10.0820 -0.5170 2.1057
15 6 10.2232 -0.7089 4.2270
16 7 9.5621 -0.7793 5.3617
17 14 12.0896 -0.7884 4.2271
18 1 12.6381 0.4584 3.6356
19 1 12.5788 -0.9311 5.6219
20 1 12.5353 -1.9551 3.4239
21 7 3.5254 -1.1997 0.0005
22 6 2.2065 -1.1917 0.0005
23 6 1.4538 -2.4972 0.0011
24 1 -0.3634 0.0005 1.0276
25 1 -0.3633 0.8898 -0.5143
26 1 -0.3634 -0.8901 -0.5135
27 1 1.6890 2.1424 0.0004
28 1 4.1735 2.0591 0.0109
29 1 6.1341 0.7680 -0.4337
30 1 6.0581 -1.0035 -0.5889
31 1 5.5813 -0.3249 2.1110
32 1 7.9768 1.6069 3.4299
33 1 7.9329 0.5871 4.8884
34 1 6.4850 0.7384 3.8644
35 1 10.0434 -0.8736 6.1985
36 1 1.2723 -2.8115 1.0289
37 1 0.5014 -2.3677 -0.5128
38 1 2.0433 -3.2567 -0.5124
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597761576.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:24
Heat of formation + Delta-G solvation = -19.157352 kcal
Electronic energy + Delta-G solvation = -19008.855669 eV
Core-core repulsion = 16043.662883 eV
Total energy + Delta-G solvation = -2965.192786 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.62683 -38.64754 -35.19202 -33.67699 -33.26234 -32.94579 -30.50976 -28.61901
-28.19172 -25.10589 -24.85051 -22.68502 -22.21450 -21.16784 -19.34478 -16.94563
-16.59723 -16.14042 -15.52849 -15.29460 -14.81099 -14.70101 -14.33732 -14.22235
-13.49177 -13.16879 -12.97055 -12.84750 -12.82092 -12.65088 -12.29505 -12.20274
-12.03177 -11.43758 -11.40036 -10.95909 -10.69810 -10.64879 -10.20449 -9.92306
-9.83894 -9.51638 -8.97124 -8.92646 -8.50132 -8.39809 -8.25646 -5.98372
-4.01410 0.88879 1.14346 3.39936 3.41840 3.45109 3.49739 3.79007
4.01214 4.23585 4.49975 4.52697 4.57516 4.69941 4.76437 5.12722
5.22358 5.33388 5.34684 5.40652 5.44422 5.46721 5.64658 5.69858
5.84126 5.96599 6.04117 6.16262 6.32970 6.58461 6.66512 6.87679
6.97109 7.09218 7.52929 7.80170 7.92781 8.03894 8.19574 8.49698
9.07365 9.28793 9.63854 11.09289
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.039315 B = 0.003694 C = 0.003668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 712.027855 B = 7578.676734 C = 7631.911372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.141 4.141
3 C -0.075 4.075
4 C -0.157 4.157
5 C 0.118 3.882
6 C 0.172 3.828
7 N -0.739 5.739
8 C 0.521 3.479
9 O -0.546 6.546
10 C 0.030 3.970
11 H 0.053 0.947
12 C -0.131 4.131
13 C -0.500 4.500
14 H 0.074 0.926
15 C 0.058 3.942
16 N -0.898 5.898
17 Si 0.901 3.099
18 H -0.277 1.277
19 H -0.288 1.288
20 H -0.276 1.276
21 N -0.466 5.466
22 C 0.126 3.874
23 C -0.107 4.107
24 H 0.073 0.927
25 H 0.066 0.934
26 H 0.073 0.927
27 H 0.134 0.866
28 H 0.137 0.863
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.396 0.604
32 H 0.031 0.969
33 H 0.093 0.907
34 H 0.011 0.989
35 H 0.261 0.739
36 H 0.079 0.921
37 H 0.076 0.924
38 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.302 2.513 -8.565 22.177
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.143 4.143
3 C -0.101 4.101
4 C -0.178 4.178
5 C -0.021 4.021
6 C 0.047 3.953
7 N -0.394 5.394
8 C 0.311 3.689
9 O -0.422 6.422
10 C 0.009 3.991
11 H 0.070 0.930
12 C -0.189 4.189
13 C -0.539 4.539
14 H 0.092 0.908
15 C -0.143 4.143
16 N -0.537 5.537
17 Si 0.729 3.271
18 H -0.202 1.202
19 H -0.214 1.214
20 H -0.202 1.202
21 N -0.176 5.176
22 C -0.013 4.013
23 C -0.164 4.164
24 H 0.092 0.908
25 H 0.085 0.915
26 H 0.092 0.908
27 H 0.152 0.848
28 H 0.155 0.845
29 H 0.095 0.905
30 H 0.096 0.904
31 H 0.230 0.770
32 H 0.050 0.950
33 H 0.111 0.889
34 H 0.030 0.970
35 H 0.071 0.929
36 H 0.097 0.903
37 H 0.095 0.905
38 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -19.205 1.723 -9.056 21.303
hybrid contribution 0.176 0.864 0.422 0.977
sum -19.029 2.587 -8.634 21.056
Atomic orbital electron populations
1.20800 0.90333 1.03060 1.02645 1.20728 0.97449 0.93692 1.02398
1.21465 0.93926 0.98063 0.96671 1.22022 0.95110 0.99176 1.01453
1.21314 0.96384 0.88406 0.95954 1.19966 0.85878 1.02868 0.86570
1.46244 1.08405 1.77845 1.06883 1.21995 0.79953 0.73043 0.93898
1.90530 1.54973 1.49381 1.47305 1.18867 0.97658 0.96858 0.85722
0.92963 1.21736 0.95524 0.97288 1.04394 1.21119 0.89674 1.49291
0.93803 0.90792 1.24952 0.98777 0.95150 0.95384 1.69864 1.35387
1.50823 0.97643 0.86503 0.85165 0.78811 0.76629 1.20211 1.21419
1.20178 1.67375 1.07498 1.31176 1.11531 1.21158 0.89536 0.95074
0.95503 1.20781 0.99145 0.93231 1.03228 0.90832 0.91481 0.90839
0.84783 0.84464 0.90539 0.90390 0.77038 0.94982 0.88867 0.97026
0.92949 0.90272 0.90517 0.90412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.71 9.62 36.01 0.35 -0.36 16
2 C -0.14 -1.39 5.90 -104.48 -0.62 -2.00 16
3 C -0.08 -0.74 9.86 -39.28 -0.39 -1.13 16
4 C -0.16 -1.83 9.72 -39.44 -0.38 -2.21 16
5 C 0.12 1.66 6.15 -82.59 -0.51 1.15 16
6 C 0.17 2.80 5.98 -5.20 -0.03 2.77 16
7 N -0.74 -13.83 5.44 -61.47 -0.33 -14.16 16
8 C 0.52 12.34 7.15 -10.98 -0.08 12.26 16
9 O -0.55 -14.63 15.46 5.55 0.09 -14.54 16
10 C 0.03 0.77 2.64 -92.93 -0.25 0.53 16
11 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16
12 C -0.13 -3.09 8.87 37.16 0.33 -2.76 16
13 C -0.50 -14.53 8.37 -34.44 -0.29 -14.81 16
14 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16
15 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16
16 N -0.90 -25.64 11.32 55.43 0.63 -25.01 16
17 Si 0.90 22.19 29.54 -169.99 -5.02 17.16 16
18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16
19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
21 N -0.47 -6.78 10.19 -5.74 -0.06 -6.84 16
22 C 0.13 1.48 6.78 -82.59 -0.56 0.92 16
23 C -0.11 -0.93 9.77 36.00 0.35 -0.58 16
24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
25 H 0.07 0.35 8.10 -51.92 -0.42 -0.07 16
26 H 0.07 0.39 5.96 -51.93 -0.31 0.08 16
27 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16
28 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16
29 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16
30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16
31 H 0.40 6.81 7.88 -40.82 -0.32 6.49 16
32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16
34 H 0.01 0.22 7.56 -51.93 -0.39 -0.18 16
35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.08 0.47 5.94 -51.93 -0.31 0.17 16
38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
LS Contribution 318.97 15.07 4.81 4.81
Total: -1.00 -32.89 318.97 -7.42 -40.31
By element:
Atomic # 1 Polarization: 8.33 SS G_CDS: -5.36 Total: 2.97 kcal
Atomic # 6 Polarization: -2.53 SS G_CDS: -2.16 Total: -4.70 kcal
Atomic # 7 Polarization: -46.25 SS G_CDS: 0.23 Total: -46.02 kcal
Atomic # 8 Polarization: -14.63 SS G_CDS: 0.09 Total: -14.54 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -32.89 -7.42 -40.31 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597761576.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.153 kcal
(2) G-P(sol) polarization free energy of solvation -32.894 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds