Wall clock time and date at job start Mon Mar 30 2020 04:13:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38675 * 120.41908 * 2 1
4 4 C 1.38628 * 118.41657 * 179.70919 * 3 2 1
5 5 C 1.38222 * 119.16505 * 0.54749 * 4 3 2
6 6 C 1.50697 * 119.62191 * 179.70894 * 5 4 3
7 7 N 1.46500 * 109.46896 * 94.73192 * 6 5 4
8 8 C 1.34780 * 120.00188 * 180.02562 * 7 6 5
9 9 O 1.21285 * 119.99712 * 359.97438 * 8 7 6
10 10 C 1.50699 * 120.00249 * 179.97438 * 8 7 6
11 11 H 1.09002 * 109.46959 * 59.99905 * 10 8 7
12 12 C 1.52997 * 109.47078 * 299.99993 * 10 8 7
13 13 C 1.50697 * 109.46956 * 179.97438 * 10 8 7
14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 8
15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 8
16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10
17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10
18 18 H 1.48506 * 109.46872 * 59.99743 * 17 15 13
19 19 H 1.48503 * 109.47008 * 179.97438 * 17 15 13
20 20 H 1.48494 * 109.46914 * 299.99916 * 17 15 13
21 21 N 1.31862 * 120.76134 * 359.44127 * 5 4 3
22 22 C 1.31888 * 121.72567 * 0.26863 * 21 5 4
23 23 C 1.50696 * 119.61726 * 180.02562 * 22 21 5
24 24 H 1.08997 * 109.47305 * 270.02589 * 1 2 3
25 25 H 1.09009 * 109.46855 * 30.02559 * 1 2 3
26 26 H 1.09000 * 109.47282 * 150.01811 * 1 2 3
27 27 H 1.08002 * 120.78927 * 0.02562 * 3 2 1
28 28 H 1.07999 * 120.41740 * 180.28064 * 4 3 2
29 29 H 1.09002 * 109.47120 * 334.73369 * 6 5 4
30 30 H 1.09000 * 109.47374 * 214.73273 * 6 5 4
31 31 H 0.96998 * 119.99994 * 359.97438 * 7 6 5
32 32 H 1.09002 * 109.47153 * 299.99793 * 12 10 8
33 33 H 1.09001 * 109.46832 * 179.97438 * 12 10 8
34 34 H 1.09004 * 109.47261 * 59.99965 * 12 10 8
35 35 H 0.96999 * 120.00480 * 179.97438 * 16 15 13
36 36 H 1.09006 * 109.46799 * 90.00352 * 23 22 21
37 37 H 1.08997 * 109.47285 * 209.99828 * 23 22 21
38 38 H 1.08995 * 109.47625 * 330.00451 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2091 1.1959 0.0000
4 6 3.5945 1.1474 0.0062
5 6 4.2256 -0.0823 0.0006
6 6 5.7312 -0.1469 0.0006
7 7 6.2139 -0.2881 1.3765
8 6 7.5368 -0.3659 1.6220
9 8 8.3277 -0.3194 0.7037
10 6 8.0334 -0.5105 3.0375
11 1 7.6307 -1.4255 3.4720
12 6 7.5741 0.6920 3.8644
13 6 9.5390 -0.5753 3.0375
14 1 10.0820 -0.5170 2.1057
15 6 10.2232 -0.7089 4.2270
16 7 9.5621 -0.7793 5.3617
17 14 12.0896 -0.7884 4.2271
18 1 12.6381 0.4584 3.6356
19 1 12.5788 -0.9311 5.6219
20 1 12.5353 -1.9551 3.4239
21 7 3.5254 -1.1997 0.0005
22 6 2.2065 -1.1917 0.0005
23 6 1.4538 -2.4972 0.0011
24 1 -0.3634 0.0005 1.0276
25 1 -0.3633 0.8898 -0.5143
26 1 -0.3634 -0.8901 -0.5135
27 1 1.6890 2.1424 0.0004
28 1 4.1735 2.0591 0.0109
29 1 6.1341 0.7680 -0.4337
30 1 6.0581 -1.0035 -0.5889
31 1 5.5813 -0.3249 2.1110
32 1 7.9768 1.6069 3.4299
33 1 7.9329 0.5871 4.8884
34 1 6.4850 0.7384 3.8644
35 1 10.0434 -0.8736 6.1985
36 1 1.2723 -2.8115 1.0289
37 1 0.5014 -2.3677 -0.5128
38 1 2.0433 -3.2567 -0.5124
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597761576.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:24
Heat of formation + Delta-G solvation = -41.085510 kcal
Electronic energy + Delta-G solvation = -19009.806545 eV
Core-core repulsion = 16043.662883 eV
Total energy + Delta-G solvation = -2966.143662 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.55299 -40.44269 -36.44930 -35.76732 -34.36540 -33.93750 -32.49491 -29.45791
-29.23075 -27.20850 -25.93022 -24.14912 -23.36058 -22.16453 -21.15969 -18.46348
-18.11704 -17.65363 -17.00455 -16.67118 -16.16515 -16.04643 -15.65366 -15.51025
-14.69233 -14.65713 -14.25686 -13.88898 -13.67553 -13.64031 -13.53712 -13.31632
-13.14259 -12.96820 -12.85228 -12.69845 -12.60265 -12.20816 -12.13691 -12.00185
-11.06363 -10.70030 -10.63849 -10.45299 -10.34899 -10.04478 -9.63951 -8.15052
-6.26065 -0.00079 0.31164 1.41422 1.43517 1.52008 1.89379 2.27787
2.47322 2.89401 3.12665 3.14316 3.65095 3.83200 3.99726 4.01978
4.22459 4.35030 4.50797 4.64094 4.66124 4.72254 4.73858 4.75494
4.83263 4.92608 4.93455 5.00166 5.13779 5.18870 5.27421 5.37321
5.47502 5.48287 5.73479 5.80009 5.92674 6.19392 6.67462 6.83763
7.02633 7.38108 7.49319 8.90821
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.039315 B = 0.003694 C = 0.003668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 712.027855 B = 7578.676734 C = 7631.911372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.132 4.132
3 C -0.075 4.075
4 C -0.157 4.157
5 C 0.092 3.908
6 C 0.176 3.824
7 N -0.718 5.718
8 C 0.523 3.477
9 O -0.585 6.585
10 C 0.025 3.975
11 H 0.038 0.962
12 C -0.117 4.117
13 C -0.531 4.531
14 H 0.050 0.950
15 C 0.019 3.981
16 N -0.912 5.912
17 Si 0.958 3.042
18 H -0.274 1.274
19 H -0.274 1.274
20 H -0.277 1.277
21 N -0.501 5.501
22 C 0.105 3.895
23 C -0.105 4.105
24 H 0.084 0.916
25 H 0.084 0.916
26 H 0.086 0.914
27 H 0.168 0.832
28 H 0.150 0.850
29 H 0.083 0.917
30 H 0.059 0.941
31 H 0.405 0.595
32 H 0.026 0.974
33 H 0.071 0.929
34 H 0.047 0.953
35 H 0.265 0.735
36 H 0.085 0.915
37 H 0.105 0.895
38 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.664 3.461 -8.526 24.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.134 4.134
3 C -0.101 4.101
4 C -0.178 4.178
5 C -0.045 4.045
6 C 0.052 3.948
7 N -0.371 5.371
8 C 0.313 3.687
9 O -0.464 6.464
10 C 0.003 3.997
11 H 0.055 0.945
12 C -0.175 4.175
13 C -0.570 4.570
14 H 0.068 0.932
15 C -0.180 4.180
16 N -0.551 5.551
17 Si 0.783 3.217
18 H -0.200 1.200
19 H -0.198 1.198
20 H -0.202 1.202
21 N -0.212 5.212
22 C -0.034 4.034
23 C -0.162 4.162
24 H 0.103 0.897
25 H 0.102 0.898
26 H 0.104 0.896
27 H 0.186 0.814
28 H 0.168 0.832
29 H 0.101 0.899
30 H 0.077 0.923
31 H 0.241 0.759
32 H 0.045 0.955
33 H 0.090 0.910
34 H 0.066 0.934
35 H 0.075 0.925
36 H 0.103 0.897
37 H 0.123 0.877
38 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -21.621 2.674 -9.005 23.574
hybrid contribution 0.759 0.546 0.389 1.012
sum -20.862 3.220 -8.616 22.800
Atomic orbital electron populations
1.20906 0.87471 1.04594 1.03745 1.21175 0.99448 0.92900 0.99859
1.21883 0.93173 0.99603 0.95409 1.22177 0.96311 0.98494 1.00789
1.20947 0.94801 0.89635 0.99098 1.19972 0.88201 1.02263 0.84375
1.45962 1.06812 1.75712 1.08655 1.21578 0.81318 0.73147 0.92681
1.90504 1.56394 1.51562 1.47937 1.18809 0.96296 0.97071 0.87477
0.94462 1.21538 0.97746 0.95910 1.02332 1.21268 0.91634 1.50806
0.93269 0.93174 1.25625 1.02928 0.94495 0.94948 1.69946 1.36827
1.50393 0.97938 0.85616 0.80174 0.78649 0.77225 1.19971 1.19848
1.20220 1.67264 1.09272 1.31888 1.12729 1.21694 0.88843 0.97140
0.95711 1.20866 0.99854 0.91629 1.03841 0.89714 0.89764 0.89583
0.81437 0.83196 0.89892 0.92313 0.75946 0.95456 0.91002 0.93372
0.92544 0.89684 0.87669 0.91609
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.94 9.62 71.24 0.69 -0.26 16
2 C -0.13 -2.20 5.90 -19.77 -0.12 -2.32 16
3 C -0.08 -1.24 9.86 22.47 0.22 -1.02 16
4 C -0.16 -3.38 9.72 22.36 0.22 -3.16 16
5 C 0.09 2.58 6.15 42.55 0.26 2.84 16
6 C 0.18 5.84 5.98 85.63 0.51 6.35 16
7 N -0.72 -27.16 5.44 -466.78 -2.54 -29.70 16
8 C 0.52 25.41 7.15 87.66 0.63 26.04 16
9 O -0.58 -32.45 15.46 -3.05 -0.05 -32.50 16
10 C 0.02 1.30 2.64 -12.29 -0.03 1.26 16
11 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16
12 C -0.12 -5.51 8.87 71.98 0.64 -4.87 16
13 C -0.53 -31.70 8.37 25.60 0.21 -31.49 16
14 H 0.05 3.18 6.75 -2.91 -0.02 3.16 16
15 C 0.02 1.10 5.30 84.66 0.45 1.54 16
16 N -0.91 -52.27 11.32 21.45 0.24 -52.02 16
17 Si 0.96 45.76 29.54 68.60 2.03 47.79 16
18 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16
19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16
20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16
21 N -0.50 -14.48 10.19 -172.08 -1.75 -16.23 16
22 C 0.10 2.30 6.78 42.54 0.29 2.59 16
23 C -0.11 -1.64 9.77 71.23 0.70 -0.95 16
24 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16
25 H 0.08 0.48 8.10 -2.38 -0.02 0.46 16
26 H 0.09 0.54 5.96 -2.39 -0.01 0.53 16
27 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16
28 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16
29 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16
30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
31 H 0.41 13.80 7.88 -92.71 -0.73 13.07 16
32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
33 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16
34 H 0.05 1.85 7.56 -2.38 -0.02 1.83 16
35 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16
36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16
37 H 0.10 0.98 5.94 -2.39 -0.01 0.97 16
38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
Total: -1.00 -72.78 318.97 2.93 -69.86
By element:
Atomic # 1 Polarization: 15.92 SS G_CDS: 0.34 Total: 16.26 kcal
Atomic # 6 Polarization: -8.11 SS G_CDS: 4.66 Total: -3.45 kcal
Atomic # 7 Polarization: -93.91 SS G_CDS: -4.05 Total: -97.96 kcal
Atomic # 8 Polarization: -32.45 SS G_CDS: -0.05 Total: -32.50 kcal
Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal
Total: -72.78 2.93 -69.86 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597761576.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.771 kcal
(2) G-P(sol) polarization free energy of solvation -72.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.086 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds