Wall clock time and date at job start Mon Mar 30 2020 04:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38675 * 120.41908 * 2 1 4 4 C 1.38628 * 118.41657 * 179.70919 * 3 2 1 5 5 C 1.38222 * 119.16505 * 0.54749 * 4 3 2 6 6 C 1.50697 * 119.62191 * 179.70894 * 5 4 3 7 7 N 1.46500 * 109.46896 * 94.73192 * 6 5 4 8 8 C 1.34780 * 120.00188 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99712 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00249 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.46959 * 59.99905 * 10 8 7 12 12 C 1.52997 * 109.47078 * 299.99993 * 10 8 7 13 13 C 1.50697 * 109.46956 * 179.97438 * 10 8 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 8 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.46872 * 59.99743 * 17 15 13 19 19 H 1.48503 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46914 * 299.99916 * 17 15 13 21 21 N 1.31862 * 120.76134 * 359.44127 * 5 4 3 22 22 C 1.31888 * 121.72567 * 0.26863 * 21 5 4 23 23 C 1.50696 * 119.61726 * 180.02562 * 22 21 5 24 24 H 1.08997 * 109.47305 * 270.02589 * 1 2 3 25 25 H 1.09009 * 109.46855 * 30.02559 * 1 2 3 26 26 H 1.09000 * 109.47282 * 150.01811 * 1 2 3 27 27 H 1.08002 * 120.78927 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.41740 * 180.28064 * 4 3 2 29 29 H 1.09002 * 109.47120 * 334.73369 * 6 5 4 30 30 H 1.09000 * 109.47374 * 214.73273 * 6 5 4 31 31 H 0.96998 * 119.99994 * 359.97438 * 7 6 5 32 32 H 1.09002 * 109.47153 * 299.99793 * 12 10 8 33 33 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 34 34 H 1.09004 * 109.47261 * 59.99965 * 12 10 8 35 35 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.46799 * 90.00352 * 23 22 21 37 37 H 1.08997 * 109.47285 * 209.99828 * 23 22 21 38 38 H 1.08995 * 109.47625 * 330.00451 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1474 0.0062 5 6 4.2256 -0.0823 0.0006 6 6 5.7312 -0.1469 0.0006 7 7 6.2139 -0.2881 1.3765 8 6 7.5368 -0.3659 1.6220 9 8 8.3277 -0.3194 0.7037 10 6 8.0334 -0.5105 3.0375 11 1 7.6307 -1.4255 3.4720 12 6 7.5741 0.6920 3.8644 13 6 9.5390 -0.5753 3.0375 14 1 10.0820 -0.5170 2.1057 15 6 10.2232 -0.7089 4.2270 16 7 9.5621 -0.7793 5.3617 17 14 12.0896 -0.7884 4.2271 18 1 12.6381 0.4584 3.6356 19 1 12.5788 -0.9311 5.6219 20 1 12.5353 -1.9551 3.4239 21 7 3.5254 -1.1997 0.0005 22 6 2.2065 -1.1917 0.0005 23 6 1.4538 -2.4972 0.0011 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6890 2.1424 0.0004 28 1 4.1735 2.0591 0.0109 29 1 6.1341 0.7680 -0.4337 30 1 6.0581 -1.0035 -0.5889 31 1 5.5813 -0.3249 2.1110 32 1 7.9768 1.6069 3.4299 33 1 7.9329 0.5871 4.8884 34 1 6.4850 0.7384 3.8644 35 1 10.0434 -0.8736 6.1985 36 1 1.2723 -2.8115 1.0289 37 1 0.5014 -2.3677 -0.5128 38 1 2.0433 -3.2567 -0.5124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597761576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:24 Heat of formation + Delta-G solvation = -41.085510 kcal Electronic energy + Delta-G solvation = -19009.806545 eV Core-core repulsion = 16043.662883 eV Total energy + Delta-G solvation = -2966.143662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55299 -40.44269 -36.44930 -35.76732 -34.36540 -33.93750 -32.49491 -29.45791 -29.23075 -27.20850 -25.93022 -24.14912 -23.36058 -22.16453 -21.15969 -18.46348 -18.11704 -17.65363 -17.00455 -16.67118 -16.16515 -16.04643 -15.65366 -15.51025 -14.69233 -14.65713 -14.25686 -13.88898 -13.67553 -13.64031 -13.53712 -13.31632 -13.14259 -12.96820 -12.85228 -12.69845 -12.60265 -12.20816 -12.13691 -12.00185 -11.06363 -10.70030 -10.63849 -10.45299 -10.34899 -10.04478 -9.63951 -8.15052 -6.26065 -0.00079 0.31164 1.41422 1.43517 1.52008 1.89379 2.27787 2.47322 2.89401 3.12665 3.14316 3.65095 3.83200 3.99726 4.01978 4.22459 4.35030 4.50797 4.64094 4.66124 4.72254 4.73858 4.75494 4.83263 4.92608 4.93455 5.00166 5.13779 5.18870 5.27421 5.37321 5.47502 5.48287 5.73479 5.80009 5.92674 6.19392 6.67462 6.83763 7.02633 7.38108 7.49319 8.90821 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039315 B = 0.003694 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.027855 B = 7578.676734 C = 7631.911372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C -0.075 4.075 4 C -0.157 4.157 5 C 0.092 3.908 6 C 0.176 3.824 7 N -0.718 5.718 8 C 0.523 3.477 9 O -0.585 6.585 10 C 0.025 3.975 11 H 0.038 0.962 12 C -0.117 4.117 13 C -0.531 4.531 14 H 0.050 0.950 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.958 3.042 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.277 1.277 21 N -0.501 5.501 22 C 0.105 3.895 23 C -0.105 4.105 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.405 0.595 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.664 3.461 -8.526 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.134 4.134 3 C -0.101 4.101 4 C -0.178 4.178 5 C -0.045 4.045 6 C 0.052 3.948 7 N -0.371 5.371 8 C 0.313 3.687 9 O -0.464 6.464 10 C 0.003 3.997 11 H 0.055 0.945 12 C -0.175 4.175 13 C -0.570 4.570 14 H 0.068 0.932 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.783 3.217 18 H -0.200 1.200 19 H -0.198 1.198 20 H -0.202 1.202 21 N -0.212 5.212 22 C -0.034 4.034 23 C -0.162 4.162 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.186 0.814 28 H 0.168 0.832 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.241 0.759 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.621 2.674 -9.005 23.574 hybrid contribution 0.759 0.546 0.389 1.012 sum -20.862 3.220 -8.616 22.800 Atomic orbital electron populations 1.20906 0.87471 1.04594 1.03745 1.21175 0.99448 0.92900 0.99859 1.21883 0.93173 0.99603 0.95409 1.22177 0.96311 0.98494 1.00789 1.20947 0.94801 0.89635 0.99098 1.19972 0.88201 1.02263 0.84375 1.45962 1.06812 1.75712 1.08655 1.21578 0.81318 0.73147 0.92681 1.90504 1.56394 1.51562 1.47937 1.18809 0.96296 0.97071 0.87477 0.94462 1.21538 0.97746 0.95910 1.02332 1.21268 0.91634 1.50806 0.93269 0.93174 1.25625 1.02928 0.94495 0.94948 1.69946 1.36827 1.50393 0.97938 0.85616 0.80174 0.78649 0.77225 1.19971 1.19848 1.20220 1.67264 1.09272 1.31888 1.12729 1.21694 0.88843 0.97140 0.95711 1.20866 0.99854 0.91629 1.03841 0.89714 0.89764 0.89583 0.81437 0.83196 0.89892 0.92313 0.75946 0.95456 0.91002 0.93372 0.92544 0.89684 0.87669 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.62 71.24 0.69 -0.26 16 2 C -0.13 -2.20 5.90 -19.77 -0.12 -2.32 16 3 C -0.08 -1.24 9.86 22.47 0.22 -1.02 16 4 C -0.16 -3.38 9.72 22.36 0.22 -3.16 16 5 C 0.09 2.58 6.15 42.55 0.26 2.84 16 6 C 0.18 5.84 5.98 85.63 0.51 6.35 16 7 N -0.72 -27.16 5.44 -466.78 -2.54 -29.70 16 8 C 0.52 25.41 7.15 87.66 0.63 26.04 16 9 O -0.58 -32.45 15.46 -3.05 -0.05 -32.50 16 10 C 0.02 1.30 2.64 -12.29 -0.03 1.26 16 11 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 12 C -0.12 -5.51 8.87 71.98 0.64 -4.87 16 13 C -0.53 -31.70 8.37 25.60 0.21 -31.49 16 14 H 0.05 3.18 6.75 -2.91 -0.02 3.16 16 15 C 0.02 1.10 5.30 84.66 0.45 1.54 16 16 N -0.91 -52.27 11.32 21.45 0.24 -52.02 16 17 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 18 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 N -0.50 -14.48 10.19 -172.08 -1.75 -16.23 16 22 C 0.10 2.30 6.78 42.54 0.29 2.59 16 23 C -0.11 -1.64 9.77 71.23 0.70 -0.95 16 24 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.08 0.48 8.10 -2.38 -0.02 0.46 16 26 H 0.09 0.54 5.96 -2.39 -0.01 0.53 16 27 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.41 13.80 7.88 -92.71 -0.73 13.07 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 34 H 0.05 1.85 7.56 -2.38 -0.02 1.83 16 35 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.10 0.98 5.94 -2.39 -0.01 0.97 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.78 318.97 2.93 -69.86 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.34 Total: 16.26 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 4.66 Total: -3.45 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.05 Total: -97.96 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.05 Total: -32.50 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -72.78 2.93 -69.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.771 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds