Wall clock time and date at job start Mon Mar 30 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47178 * 2 1 4 4 C 1.53004 * 109.47137 * 120.00261 * 2 1 3 5 5 N 1.46495 * 109.46847 * 295.00278 * 4 2 1 6 6 C 1.34782 * 119.99791 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00110 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99714 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46770 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46729 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00274 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99839 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00115 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46946 * 90.00427 * 14 12 10 16 16 H 1.48506 * 109.47255 * 210.00125 * 14 12 10 17 17 H 1.48503 * 109.47358 * 330.00066 * 14 12 10 18 18 C 1.50707 * 109.47061 * 239.99724 * 2 1 3 19 19 C 1.38227 * 119.62059 * 325.02508 * 18 2 1 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 2 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 144.99938 * 18 2 1 24 24 H 1.08998 * 109.47161 * 299.99765 * 1 2 3 25 25 H 1.08995 * 109.46891 * 60.00275 * 1 2 3 26 26 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47151 * 54.99912 * 4 2 1 28 28 H 1.08994 * 109.47218 * 175.00102 * 4 2 1 29 29 H 0.97007 * 120.00533 * 359.97438 * 5 4 2 30 30 H 1.08998 * 109.47090 * 299.99559 * 8 6 5 31 31 H 1.08994 * 109.47289 * 59.99755 * 8 6 5 32 32 H 1.08998 * 109.47151 * 299.99763 * 9 8 6 33 33 H 1.09001 * 109.47049 * 60.00296 * 9 8 6 34 34 H 0.96997 * 120.00261 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.41915 * 359.97438 * 19 18 2 36 36 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 37 37 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 38 38 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 0.0352 2.4423 6 6 1.9964 -0.4133 3.6659 7 8 2.6264 -1.4433 3.7792 8 6 1.5981 0.3653 4.8932 9 6 2.1081 -0.3561 6.1425 10 6 1.7103 0.4228 7.3697 11 1 1.1496 1.3403 7.2689 12 6 2.0614 -0.0364 8.6215 13 7 2.7438 -1.1540 8.7444 14 14 1.5678 0.9286 10.1428 15 1 0.2402 0.4612 10.6163 16 1 2.5769 0.7179 11.2117 17 1 1.4939 2.3740 9.8098 18 6 2.0324 -0.7105 -1.2305 19 6 1.3318 -1.7932 -1.7281 20 6 1.7995 -2.4363 -2.8636 21 6 2.9651 -1.9705 -3.4530 22 6 3.6114 -0.8820 -2.8990 23 7 3.1349 -0.2917 -1.8202 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6054 -1.7199 1.2951 28 1 3.1263 -0.7995 1.2056 29 1 1.1488 0.8593 2.3518 30 1 2.0328 1.3638 4.8470 31 1 0.5119 0.4436 4.9372 32 1 1.6730 -1.3544 6.1885 33 1 3.1943 -0.4347 6.0987 34 1 2.9911 -1.4769 9.6250 35 1 0.4294 -2.1314 -1.2406 36 1 1.2709 -3.2825 -3.2770 37 1 3.3603 -2.4496 -4.3366 38 1 4.5175 -0.5106 -3.3544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597864073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:35 Heat of formation + Delta-G solvation = -23.383412 kcal Electronic energy + Delta-G solvation = -18537.201893 eV Core-core repulsion = 15571.825852 eV Total energy + Delta-G solvation = -2965.376041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63657 -39.09874 -36.29561 -33.41653 -33.13302 -32.73834 -30.96294 -29.87033 -27.04230 -25.41341 -23.95459 -23.62006 -21.54776 -20.69775 -19.61328 -17.25244 -16.77665 -16.68815 -15.78218 -15.74659 -15.30275 -15.18726 -14.41463 -14.22348 -14.14576 -13.91348 -13.30732 -13.16740 -12.88296 -12.44394 -12.15840 -12.04687 -11.68050 -11.40370 -11.22129 -11.12403 -10.90262 -10.57465 -10.15001 -9.91917 -9.69596 -9.62903 -9.29606 -9.13082 -8.95585 -8.73480 -8.29165 -5.93327 -3.97648 0.80953 1.00404 3.31485 3.35192 3.39080 3.41700 3.44336 3.62000 4.03012 4.40914 4.50275 4.56210 4.71945 4.75306 4.83036 4.93668 4.97884 5.32327 5.41493 5.43208 5.48424 5.56954 5.68083 5.70789 5.80150 5.90578 6.01101 6.07169 6.27303 6.28963 6.40597 6.75594 6.93679 7.73647 7.77561 7.90199 7.93379 8.10674 8.41924 8.83465 9.11266 9.65704 11.17677 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.051469 B = 0.002937 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.887846 B = 9532.409823 C = 9705.552114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 H 0.097 0.903 4 C 0.133 3.867 5 N -0.742 5.742 6 C 0.509 3.491 7 O -0.535 6.535 8 C -0.130 4.130 9 C 0.036 3.964 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.141 3.859 19 C -0.166 4.166 20 C -0.074 4.074 21 C -0.179 4.179 22 C 0.101 3.899 23 N -0.480 5.480 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.397 0.603 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 1.257 -25.698 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.074 4.074 3 H 0.115 0.885 4 C 0.008 3.992 5 N -0.397 5.397 6 C 0.298 3.702 7 O -0.410 6.410 8 C -0.169 4.169 9 C -0.001 4.001 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.003 3.997 19 C -0.186 4.186 20 C -0.100 4.100 21 C -0.199 4.199 22 C -0.056 4.056 23 N -0.189 5.189 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.231 0.769 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.470 1.085 -25.124 25.385 hybrid contribution -0.849 0.048 0.294 0.900 sum -4.319 1.133 -24.830 25.228 Atomic orbital electron populations 1.21945 0.93334 1.02755 1.02569 1.20296 0.96301 1.00423 0.90385 0.88461 1.21159 1.00201 0.95032 0.82830 1.46187 1.59764 1.28056 1.05724 1.21566 0.78279 0.85909 0.84484 1.90669 1.39054 1.24680 1.86613 1.21861 1.01933 0.99839 0.93315 1.18902 0.97214 0.95521 0.88478 1.21231 1.35554 1.08500 0.91179 0.92599 1.25032 0.95205 0.95083 0.99125 1.70001 1.38423 1.21014 1.23439 0.86591 0.78207 0.80298 0.82837 1.20694 1.21241 1.19891 1.21027 0.90620 0.92885 0.95217 1.22056 1.01994 0.97057 0.97500 1.21613 0.95312 0.98543 0.94572 1.22154 0.97002 0.98807 1.01962 1.22769 0.98854 0.92387 0.91606 1.67502 1.11963 1.30475 1.08970 0.91253 0.92155 0.91849 0.91698 0.91588 0.76888 0.90221 0.90251 0.95842 0.95821 0.92971 0.84395 0.84792 0.84839 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.49 37.16 0.32 -0.85 16 2 C -0.05 -0.55 2.74 -91.76 -0.25 -0.80 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.13 1.75 5.05 -4.04 -0.02 1.73 16 5 N -0.74 -10.58 5.28 -60.30 -0.32 -10.90 16 6 C 0.51 10.02 7.83 -10.98 -0.09 9.93 16 7 O -0.53 -13.03 15.98 5.56 0.09 -12.94 16 8 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.76 13.29 55.43 0.74 -27.03 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 18 C 0.14 1.51 5.79 -82.58 -0.48 1.03 16 19 C -0.17 -1.48 9.18 -39.44 -0.36 -1.85 16 20 C -0.07 -0.57 10.18 -39.28 -0.40 -0.97 16 21 C -0.18 -1.34 10.11 -39.44 -0.40 -1.74 16 22 C 0.10 0.92 11.18 -17.55 -0.20 0.72 16 23 N -0.48 -5.59 10.27 -9.47 -0.10 -5.69 16 24 H 0.07 0.52 7.18 -51.93 -0.37 0.15 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.47 6.49 -51.93 -0.34 0.14 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.40 4.35 7.66 -40.82 -0.31 4.04 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.14 1.00 6.31 -52.49 -0.33 0.67 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -35.84 323.61 -7.84 -43.68 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.54 Total: -0.27 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.56 Total: -8.56 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.32 Total: -43.61 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.84 -7.84 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597864073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.292 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds