Wall clock time and date at job start Mon Mar 30 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47178 * 2 1 4 4 C 1.53004 * 109.47137 * 120.00261 * 2 1 3 5 5 N 1.46495 * 109.46847 * 295.00278 * 4 2 1 6 6 C 1.34782 * 119.99791 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00110 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99714 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46770 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46729 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00274 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99839 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00115 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46946 * 90.00427 * 14 12 10 16 16 H 1.48506 * 109.47255 * 210.00125 * 14 12 10 17 17 H 1.48503 * 109.47358 * 330.00066 * 14 12 10 18 18 C 1.50707 * 109.47061 * 239.99724 * 2 1 3 19 19 C 1.38227 * 119.62059 * 325.02508 * 18 2 1 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 2 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 144.99938 * 18 2 1 24 24 H 1.08998 * 109.47161 * 299.99765 * 1 2 3 25 25 H 1.08995 * 109.46891 * 60.00275 * 1 2 3 26 26 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47151 * 54.99912 * 4 2 1 28 28 H 1.08994 * 109.47218 * 175.00102 * 4 2 1 29 29 H 0.97007 * 120.00533 * 359.97438 * 5 4 2 30 30 H 1.08998 * 109.47090 * 299.99559 * 8 6 5 31 31 H 1.08994 * 109.47289 * 59.99755 * 8 6 5 32 32 H 1.08998 * 109.47151 * 299.99763 * 9 8 6 33 33 H 1.09001 * 109.47049 * 60.00296 * 9 8 6 34 34 H 0.96997 * 120.00261 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.41915 * 359.97438 * 19 18 2 36 36 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 37 37 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 38 38 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 0.0352 2.4423 6 6 1.9964 -0.4133 3.6659 7 8 2.6264 -1.4433 3.7792 8 6 1.5981 0.3653 4.8932 9 6 2.1081 -0.3561 6.1425 10 6 1.7103 0.4228 7.3697 11 1 1.1496 1.3403 7.2689 12 6 2.0614 -0.0364 8.6215 13 7 2.7438 -1.1540 8.7444 14 14 1.5678 0.9286 10.1428 15 1 0.2402 0.4612 10.6163 16 1 2.5769 0.7179 11.2117 17 1 1.4939 2.3740 9.8098 18 6 2.0324 -0.7105 -1.2305 19 6 1.3318 -1.7932 -1.7281 20 6 1.7995 -2.4363 -2.8636 21 6 2.9651 -1.9705 -3.4530 22 6 3.6114 -0.8820 -2.8990 23 7 3.1349 -0.2917 -1.8202 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6054 -1.7199 1.2951 28 1 3.1263 -0.7995 1.2056 29 1 1.1488 0.8593 2.3518 30 1 2.0328 1.3638 4.8470 31 1 0.5119 0.4436 4.9372 32 1 1.6730 -1.3544 6.1885 33 1 3.1943 -0.4347 6.0987 34 1 2.9911 -1.4769 9.6250 35 1 0.4294 -2.1314 -1.2406 36 1 1.2709 -3.2825 -3.2770 37 1 3.3603 -2.4496 -4.3366 38 1 4.5175 -0.5106 -3.3544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597864073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:35 Heat of formation + Delta-G solvation = -48.396850 kcal Electronic energy + Delta-G solvation = -18538.286558 eV Core-core repulsion = 15571.825852 eV Total energy + Delta-G solvation = -2966.460705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.36919 -40.59352 -37.36783 -35.54841 -34.32396 -33.39570 -32.92015 -30.65680 -28.41888 -26.97159 -24.92519 -24.30859 -23.35098 -21.62909 -21.10931 -18.84242 -17.88196 -17.48459 -17.35743 -16.90324 -16.64218 -16.41161 -16.10039 -15.37404 -15.11138 -14.78078 -14.55717 -14.18625 -14.13210 -13.87185 -13.66055 -13.22332 -12.95972 -12.79707 -12.48060 -12.39127 -12.29263 -11.99341 -11.90015 -11.62474 -11.29620 -10.82318 -10.77285 -10.56140 -10.36086 -10.09542 -9.91748 -8.17000 -6.31134 0.15033 0.37257 1.42859 1.45870 1.56788 1.72071 2.21590 2.45330 2.85380 3.15954 3.29621 3.69027 3.88098 4.00043 4.09047 4.11183 4.21339 4.24557 4.31233 4.52688 4.57112 4.63671 4.71463 4.74622 4.87424 4.96780 5.05194 5.11672 5.22573 5.27874 5.36778 5.45203 5.52648 5.64652 5.80214 5.86809 6.18684 6.61510 6.87662 7.05822 7.35198 7.39326 8.95843 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.051469 B = 0.002937 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.887846 B = 9532.409823 C = 9705.552114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 H 0.096 0.904 4 C 0.137 3.863 5 N -0.714 5.714 6 C 0.510 3.490 7 O -0.592 6.592 8 C -0.118 4.118 9 C 0.041 3.959 10 C -0.542 4.542 11 H 0.077 0.923 12 C -0.009 4.009 13 N -0.939 5.939 14 Si 0.975 3.025 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.255 1.255 18 C 0.115 3.885 19 C -0.173 4.173 20 C -0.078 4.078 21 C -0.174 4.174 22 C 0.082 3.918 23 N -0.515 5.515 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.418 0.582 30 H 0.105 0.895 31 H 0.109 0.891 32 H -0.018 1.018 33 H -0.020 1.020 34 H 0.263 0.737 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 2.753 -26.943 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 H 0.114 0.886 4 C 0.012 3.988 5 N -0.368 5.368 6 C 0.299 3.701 7 O -0.472 6.472 8 C -0.158 4.158 9 C 0.003 3.997 10 C -0.580 4.580 11 H 0.096 0.904 12 C -0.206 4.206 13 N -0.579 5.579 14 Si 0.799 3.201 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.179 1.179 18 C -0.022 4.022 19 C -0.193 4.193 20 C -0.104 4.104 21 C -0.193 4.193 22 C -0.075 4.075 23 N -0.225 5.225 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.256 0.744 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.001 0.999 33 H -0.002 1.002 34 H 0.071 0.929 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.343 2.640 -26.424 27.088 hybrid contribution -0.232 -0.471 0.557 0.765 sum -5.574 2.168 -25.868 26.550 Atomic orbital electron populations 1.21943 0.91339 1.03418 1.03514 1.20174 0.97772 0.99654 0.88538 0.88584 1.21169 0.98702 0.95269 0.83650 1.45849 1.58176 1.28353 1.04436 1.21400 0.77806 0.85051 0.85862 1.90655 1.41888 1.27152 1.87508 1.21640 1.03569 0.99902 0.90672 1.18701 0.94366 0.94469 0.92151 1.21728 1.35394 1.09157 0.91703 0.90447 1.26165 0.94967 0.96111 1.03368 1.70186 1.40009 1.23266 1.24459 0.85304 0.77870 0.79329 0.77625 1.19612 1.21281 1.17856 1.21136 0.91216 0.94105 0.95789 1.22289 1.02384 0.96559 0.98047 1.22035 0.95408 0.98998 0.93986 1.22514 0.96535 0.97871 1.02417 1.23203 0.99768 0.93144 0.91361 1.67447 1.12781 1.31919 1.10322 0.90603 0.90871 0.91356 0.92287 0.94231 0.74442 0.87717 0.87321 0.99908 1.00165 0.92883 0.83007 0.81959 0.81871 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.49 71.98 0.61 -1.36 16 2 C -0.04 -0.80 2.74 -11.54 -0.03 -0.84 16 3 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 4 C 0.14 3.63 5.05 86.38 0.44 4.07 16 5 N -0.71 -19.74 5.28 -463.07 -2.45 -22.19 16 6 C 0.51 20.28 7.83 87.66 0.69 20.96 16 7 O -0.59 -30.23 15.98 -3.01 -0.05 -30.28 16 8 C -0.12 -4.78 5.64 29.85 0.17 -4.61 16 9 C 0.04 2.31 4.26 29.85 0.13 2.44 16 10 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 11 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 12 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 13 N -0.94 -60.39 13.29 21.45 0.28 -60.10 16 14 Si 0.98 44.64 29.54 68.60 2.03 46.67 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 17 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 18 C 0.12 2.40 5.79 42.55 0.25 2.64 16 19 C -0.17 -2.84 9.18 22.36 0.21 -2.64 16 20 C -0.08 -1.02 10.18 22.47 0.23 -0.79 16 21 C -0.17 -2.24 10.11 22.36 0.23 -2.01 16 22 C 0.08 1.42 11.18 84.67 0.95 2.36 16 23 N -0.52 -11.90 10.27 -183.88 -1.89 -13.79 16 24 H 0.08 0.93 7.18 -2.39 -0.02 0.91 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.87 6.49 -2.39 -0.02 0.86 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.42 8.19 7.66 -92.70 -0.71 7.48 16 30 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 32 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 33 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 34 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.15 1.93 6.31 -2.91 -0.02 1.91 16 36 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 38 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -81.99 323.61 2.81 -79.17 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.34 Total: 11.25 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 4.55 Total: -10.74 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -4.05 Total: -96.08 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.05 Total: -30.28 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -81.99 2.81 -79.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597864073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.776 kcal (2) G-P(sol) polarization free energy of solvation -81.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds