Wall clock time and date at job start Mon Mar 30 2020 04:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47143 * 264.99738 * 8 7 6 10 10 N 1.46503 * 109.47004 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99982 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99893 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00133 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.46885 * 299.99291 * 13 11 10 15 15 C 1.52989 * 109.47419 * 59.99778 * 13 11 10 16 16 C 1.50700 * 109.47215 * 180.02562 * 13 11 10 17 17 H 1.08007 * 119.99916 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00103 * 180.02562 * 16 13 11 19 19 N 1.31511 * 120.00304 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99907 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47211 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47188 * 119.99834 * 20 18 16 23 23 H 1.48503 * 109.46837 * 239.99796 * 20 18 16 24 24 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 25 25 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 26 26 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 27 27 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 28 28 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47345 * 25.00235 * 8 7 6 31 31 H 1.09005 * 109.46886 * 144.99972 * 8 7 6 32 32 H 1.08998 * 109.46959 * 300.00275 * 9 8 7 33 33 H 1.08999 * 109.46615 * 60.00469 * 9 8 7 34 34 H 0.96995 * 120.00082 * 0.02562 * 10 9 8 35 35 H 1.09001 * 109.47425 * 180.02562 * 15 13 11 36 36 H 1.09004 * 109.47305 * 300.00162 * 15 13 11 37 37 H 1.09004 * 109.47489 * 59.99883 * 15 13 11 38 38 H 0.97002 * 120.00213 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 6 1.1345 -2.8970 -1.4367 10 7 0.4295 -4.1812 -1.4373 11 6 0.0159 -4.7224 -2.6003 12 8 0.2277 -4.1463 -3.6464 13 6 -0.7098 -6.0431 -2.6009 14 1 -0.0684 -6.8102 -2.1670 15 6 -1.9909 -5.9215 -1.7735 16 6 -1.0597 -6.4234 -4.0165 17 1 -0.7844 -5.7734 -4.8340 18 6 -1.7321 -7.6005 -4.2680 19 7 -2.0677 -8.3917 -3.2725 20 14 -2.1663 -8.0715 -6.0227 21 1 -1.6815 -7.0197 -6.9520 22 1 -1.5232 -9.3665 -6.3612 23 1 -3.6401 -8.2026 -6.1497 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6967 2.1378 0.0043 28 1 4.1582 2.0756 0.0001 29 1 4.1586 -2.0749 0.0010 30 1 2.1324 -3.2788 0.4341 31 1 0.5784 -2.4249 0.5904 32 1 0.4931 -2.1297 -1.8702 33 1 2.0470 -2.9836 -2.0265 34 1 0.2604 -4.6421 -0.6007 35 1 -2.5156 -6.8769 -1.7735 36 1 -1.7375 -5.6466 -0.7495 37 1 -2.6323 -5.1543 -2.2074 38 1 -2.5411 -9.2197 -3.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597977214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:01 Heat of formation + Delta-G solvation = -23.346701 kcal Electronic energy + Delta-G solvation = -18973.260306 eV Core-core repulsion = 16007.885857 eV Total energy + Delta-G solvation = -2965.374449 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55688 -38.77130 -35.66189 -33.87553 -33.71287 -32.35622 -30.52082 -28.79179 -27.77058 -25.13393 -24.25328 -22.76223 -22.06133 -21.22722 -19.32133 -16.96351 -16.59632 -16.37204 -15.98520 -15.59813 -14.89087 -14.75473 -14.52104 -14.16402 -13.57808 -13.41140 -13.09972 -12.96643 -12.84946 -12.64900 -12.41017 -12.01343 -11.57384 -11.50470 -11.20926 -11.02088 -10.70913 -10.66106 -10.24352 -9.95807 -9.61384 -9.60425 -9.14281 -8.95492 -8.60357 -8.45056 -8.31768 -6.02749 -4.05602 0.92176 1.07018 3.32747 3.40263 3.48636 3.57613 3.74904 3.88563 4.30328 4.47577 4.50210 4.55338 4.68549 4.81976 5.04531 5.11967 5.26151 5.29986 5.30769 5.39003 5.51427 5.64222 5.70404 5.85273 5.96734 6.00980 6.23488 6.32660 6.54141 6.61532 6.82466 6.92818 7.07260 7.48033 7.76066 7.80809 7.99790 8.15492 8.45808 9.04137 9.25308 9.60197 11.04942 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.003522 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.978790 B = 7947.891945 C = 8052.622495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.036 4.036 3 C -0.174 4.174 4 C 0.094 3.906 5 N -0.489 5.489 6 C 0.108 3.892 7 C -0.130 4.130 8 C -0.090 4.090 9 C 0.127 3.873 10 N -0.748 5.748 11 C 0.519 3.481 12 O -0.546 6.546 13 C 0.028 3.972 14 H 0.052 0.948 15 C -0.132 4.132 16 C -0.500 4.500 17 H 0.074 0.926 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.133 0.867 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.396 0.604 35 H 0.093 0.907 36 H 0.012 0.988 37 H 0.030 0.970 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 15.204 11.486 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.044 4.044 3 C -0.194 4.194 4 C -0.063 4.063 5 N -0.198 5.198 6 C -0.049 4.049 7 C -0.132 4.132 8 C -0.128 4.128 9 C 0.002 3.998 10 N -0.403 5.403 11 C 0.308 3.692 12 O -0.422 6.422 13 C 0.007 3.993 14 H 0.070 0.930 15 C -0.190 4.190 16 C -0.538 4.538 17 H 0.092 0.908 18 C -0.143 4.143 19 N -0.537 5.537 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.171 0.829 29 H 0.173 0.827 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.230 0.770 35 H 0.111 0.889 36 H 0.031 0.969 37 H 0.050 0.950 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.908 15.466 10.718 20.044 hybrid contribution -1.208 -0.424 -0.442 1.354 sum 5.700 15.042 10.275 19.088 Atomic orbital electron populations 1.20925 0.90139 1.03414 1.03441 1.20256 0.96897 0.92471 0.94731 1.22029 0.95634 0.98570 1.03176 1.22720 0.91784 0.96264 0.95512 1.67689 1.41213 0.98495 1.12403 1.22722 0.91046 0.96341 0.94829 1.20637 0.95097 0.95343 1.02166 1.20768 1.00723 0.93509 0.97782 1.21094 0.97138 0.86811 0.94707 1.46291 1.61185 1.22525 1.10286 1.21984 0.77012 0.88252 0.81920 1.90537 1.56171 1.63556 1.31930 1.18877 0.93504 0.88043 0.98847 0.92986 1.21736 0.99123 1.03529 0.94578 1.21201 1.35806 1.05213 0.91596 0.90750 1.24951 0.95725 0.96167 0.97448 1.69877 1.40854 1.12442 1.30520 0.86410 0.77900 0.78310 0.84721 1.19560 1.21043 1.21063 0.90038 0.90457 0.91118 0.84892 0.82937 0.82690 0.89932 0.89836 0.92171 0.92101 0.77044 0.88863 0.96927 0.95048 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.57 36.00 0.34 -0.68 16 2 C -0.04 -0.36 5.92 -104.32 -0.62 -0.97 16 3 C -0.17 -1.59 9.82 -39.44 -0.39 -1.98 16 4 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 5 N -0.49 -5.89 10.36 -13.25 -0.14 -6.03 16 6 C 0.11 1.21 10.84 -17.55 -0.19 1.02 16 7 C -0.13 -1.39 5.15 -104.48 -0.54 -1.93 16 8 C -0.09 -0.91 5.02 -27.88 -0.14 -1.05 16 9 C 0.13 1.81 5.66 -4.04 -0.02 1.79 16 10 N -0.75 -12.50 5.45 -60.29 -0.33 -12.83 16 11 C 0.52 11.75 7.15 -10.99 -0.08 11.67 16 12 O -0.55 -14.39 15.46 5.55 0.09 -14.30 16 13 C 0.03 0.70 2.64 -92.93 -0.25 0.46 16 14 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.13 -2.97 8.87 37.15 0.33 -2.65 16 16 C -0.50 -14.23 8.38 -34.44 -0.29 -14.52 16 17 H 0.07 2.25 6.75 -52.48 -0.35 1.90 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 19 N -0.90 -25.15 11.32 55.43 0.63 -24.52 16 20 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.63 6.17 -51.93 -0.32 0.31 16 26 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.08 0.76 6.29 -51.93 -0.33 0.43 16 32 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 5.55 7.89 -40.82 -0.32 5.23 16 35 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 36 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -32.88 318.93 -7.47 -40.36 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.38 Total: 2.29 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.12 Total: -6.61 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.16 Total: -43.38 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.88 -7.47 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597977214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.011 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds