Wall clock time and date at job start Mon Mar 30 2020 04:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47143 * 264.99738 * 8 7 6 10 10 N 1.46503 * 109.47004 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99982 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99893 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00133 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.46885 * 299.99291 * 13 11 10 15 15 C 1.52989 * 109.47419 * 59.99778 * 13 11 10 16 16 C 1.50700 * 109.47215 * 180.02562 * 13 11 10 17 17 H 1.08007 * 119.99916 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00103 * 180.02562 * 16 13 11 19 19 N 1.31511 * 120.00304 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99907 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47211 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47188 * 119.99834 * 20 18 16 23 23 H 1.48503 * 109.46837 * 239.99796 * 20 18 16 24 24 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 25 25 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 26 26 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 27 27 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 28 28 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47345 * 25.00235 * 8 7 6 31 31 H 1.09005 * 109.46886 * 144.99972 * 8 7 6 32 32 H 1.08998 * 109.46959 * 300.00275 * 9 8 7 33 33 H 1.08999 * 109.46615 * 60.00469 * 9 8 7 34 34 H 0.96995 * 120.00082 * 0.02562 * 10 9 8 35 35 H 1.09001 * 109.47425 * 180.02562 * 15 13 11 36 36 H 1.09004 * 109.47305 * 300.00162 * 15 13 11 37 37 H 1.09004 * 109.47489 * 59.99883 * 15 13 11 38 38 H 0.97002 * 120.00213 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 6 1.1345 -2.8970 -1.4367 10 7 0.4295 -4.1812 -1.4373 11 6 0.0159 -4.7224 -2.6003 12 8 0.2277 -4.1463 -3.6464 13 6 -0.7098 -6.0431 -2.6009 14 1 -0.0684 -6.8102 -2.1670 15 6 -1.9909 -5.9215 -1.7735 16 6 -1.0597 -6.4234 -4.0165 17 1 -0.7844 -5.7734 -4.8340 18 6 -1.7321 -7.6005 -4.2680 19 7 -2.0677 -8.3917 -3.2725 20 14 -2.1663 -8.0715 -6.0227 21 1 -1.6815 -7.0197 -6.9520 22 1 -1.5232 -9.3665 -6.3612 23 1 -3.6401 -8.2026 -6.1497 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6967 2.1378 0.0043 28 1 4.1582 2.0756 0.0001 29 1 4.1586 -2.0749 0.0010 30 1 2.1324 -3.2788 0.4341 31 1 0.5784 -2.4249 0.5904 32 1 0.4931 -2.1297 -1.8702 33 1 2.0470 -2.9836 -2.0265 34 1 0.2604 -4.6421 -0.6007 35 1 -2.5156 -6.8769 -1.7735 36 1 -1.7375 -5.6466 -0.7495 37 1 -2.6323 -5.1543 -2.2074 38 1 -2.5411 -9.2197 -3.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597977214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:00 Heat of formation + Delta-G solvation = -44.922867 kcal Electronic energy + Delta-G solvation = -18974.195919 eV Core-core repulsion = 16007.885857 eV Total energy + Delta-G solvation = -2966.310062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.34676 -40.47643 -36.81858 -35.75079 -34.91485 -33.42594 -32.35949 -29.78506 -28.59040 -27.18399 -25.45976 -23.90329 -23.33628 -22.13898 -21.00924 -18.36641 -17.79477 -17.72932 -17.32611 -16.96009 -16.33019 -16.18557 -15.79878 -15.20649 -14.96279 -14.65212 -14.36022 -14.18455 -13.82559 -13.58578 -13.48538 -13.40481 -13.03823 -12.95787 -12.67512 -12.56693 -12.30017 -12.21302 -12.12021 -12.02269 -11.01640 -10.62290 -10.42302 -10.35824 -10.27132 -9.96877 -9.89311 -8.14785 -6.24792 0.15756 0.31172 1.39312 1.41538 1.54881 1.94679 2.35206 2.52945 2.85308 3.14799 3.57462 3.78407 3.83403 3.92296 4.01763 4.05065 4.32061 4.41056 4.50164 4.61257 4.67681 4.75870 4.78258 4.84574 4.90908 4.97240 5.00635 5.06961 5.12533 5.27005 5.47413 5.52318 5.59576 5.76839 5.82025 5.96608 6.23788 6.76361 6.88300 7.04259 7.41051 7.56714 8.91056 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.003522 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.978790 B = 7947.891945 C = 8052.622495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.045 4.045 3 C -0.174 4.174 4 C 0.084 3.916 5 N -0.518 5.518 6 C 0.093 3.907 7 C -0.141 4.141 8 C -0.075 4.075 9 C 0.130 3.870 10 N -0.723 5.723 11 C 0.520 3.480 12 O -0.591 6.591 13 C 0.023 3.977 14 H 0.043 0.957 15 C -0.119 4.119 16 C -0.530 4.530 17 H 0.046 0.954 18 C 0.020 3.980 19 N -0.910 5.910 20 Si 0.954 3.046 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.273 1.273 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.177 0.823 29 H 0.164 0.836 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.413 0.587 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 16.003 12.845 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.053 4.053 3 C -0.193 4.193 4 C -0.072 4.072 5 N -0.227 5.227 6 C -0.064 4.064 7 C -0.144 4.144 8 C -0.113 4.113 9 C 0.006 3.994 10 N -0.377 5.377 11 C 0.309 3.691 12 O -0.471 6.471 13 C 0.002 3.998 14 H 0.061 0.939 15 C -0.177 4.177 16 C -0.568 4.568 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.779 3.221 21 H -0.206 1.206 22 H -0.200 1.200 23 H -0.198 1.198 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.178 0.822 28 H 0.194 0.806 29 H 0.181 0.819 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.250 0.750 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.532 16.260 12.145 21.320 hybrid contribution -1.048 -0.608 -0.826 1.466 sum 5.484 15.652 11.319 20.080 Atomic orbital electron populations 1.20958 0.89007 1.04633 1.03216 1.20576 0.97860 0.92623 0.94226 1.22350 0.95462 0.99505 1.02013 1.23209 0.92614 0.96561 0.94770 1.67695 1.42188 0.99327 1.13539 1.22948 0.91591 0.96697 0.95147 1.20674 0.94983 0.95743 1.02977 1.20650 1.01874 0.93867 0.94901 1.21181 0.95792 0.84944 0.97497 1.45958 1.59479 1.23062 1.09193 1.21573 0.77043 0.87700 0.82804 1.90515 1.58153 1.64556 1.33886 1.18821 0.94612 0.89071 0.97324 0.93930 1.21552 0.97515 1.01992 0.96640 1.21337 1.36968 1.05587 0.92907 0.93561 1.25573 0.95442 0.95975 1.00913 1.69946 1.40685 1.12570 1.31773 0.85572 0.78157 0.77863 0.80466 1.20600 1.19969 1.19849 0.90846 0.90077 0.89177 0.82209 0.80596 0.81896 0.88315 0.88015 0.93067 0.93665 0.75046 0.91181 0.92540 0.95883 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.57 71.24 0.68 -1.07 16 2 C -0.04 -0.81 5.92 -19.67 -0.12 -0.92 16 3 C -0.17 -2.78 9.82 22.36 0.22 -2.56 16 4 C 0.08 1.54 11.18 84.67 0.95 2.48 16 5 N -0.52 -12.03 10.36 -195.84 -2.03 -14.05 16 6 C 0.09 2.00 10.84 84.68 0.92 2.92 16 7 C -0.14 -2.80 5.15 -19.77 -0.10 -2.90 16 8 C -0.08 -1.36 5.02 29.85 0.15 -1.21 16 9 C 0.13 3.56 5.66 86.38 0.49 4.05 16 10 N -0.72 -23.18 5.45 -463.05 -2.52 -25.70 16 11 C 0.52 23.60 7.15 87.66 0.63 24.23 16 12 O -0.59 -31.91 15.46 -3.05 -0.05 -31.96 16 13 C 0.02 1.14 2.64 -12.29 -0.03 1.11 16 14 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 15 C -0.12 -5.26 8.87 71.98 0.64 -4.63 16 16 C -0.53 -30.80 8.38 25.60 0.21 -30.58 16 17 H 0.05 2.90 6.75 -2.91 -0.02 2.88 16 18 C 0.02 1.12 5.30 84.65 0.45 1.57 16 19 N -0.91 -50.82 11.32 21.45 0.24 -50.58 16 20 Si 0.95 45.02 29.54 68.60 2.03 47.05 16 21 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.09 6.17 -2.39 -0.01 1.08 16 26 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 27 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.10 1.50 8.06 -2.39 -0.02 1.48 16 31 H 0.10 1.51 6.29 -2.38 -0.02 1.49 16 32 H 0.05 1.53 8.04 -2.39 -0.02 1.51 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.41 10.48 7.89 -92.71 -0.73 9.75 16 35 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 36 H 0.06 1.94 7.57 -2.38 -0.02 1.92 16 37 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -72.08 318.93 3.08 -68.99 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.33 Total: 13.78 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.08 Total: -7.53 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -4.31 Total: -90.33 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.05 Total: -31.96 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -72.08 3.08 -68.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597977214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.071 kcal (2) G-P(sol) polarization free energy of solvation -72.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds