Wall clock time and date at job start Mon Mar 30 2020 04:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 O 1.21280 * 120.00255 * 119.99948 * 4 2 1 6 6 N 1.34779 * 120.00378 * 299.99920 * 4 2 1 7 7 C 1.46497 * 120.00488 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47188 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.47143 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47292 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99742 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99873 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00416 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99720 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47103 * 89.99986 * 14 12 10 16 16 H 1.48498 * 109.46997 * 209.99993 * 14 12 10 17 17 H 1.48501 * 109.47418 * 330.00122 * 14 12 10 18 18 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 19 19 C 1.38647 * 120.79192 * 299.72364 * 18 2 1 20 20 C 1.38206 * 119.15983 * 179.75373 * 19 18 2 21 21 N 1.31867 * 120.76697 * 0.53174 * 20 19 18 22 22 C 1.31872 * 121.72338 * 359.73753 * 21 20 19 23 23 C 1.38200 * 120.76643 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 0.97003 * 119.99556 * 0.02562 * 6 4 2 28 28 H 1.08988 * 109.47204 * 300.00557 * 7 6 4 29 29 H 1.09002 * 109.46725 * 60.00113 * 7 6 4 30 30 H 1.09004 * 109.47261 * 300.00255 * 8 7 6 31 31 H 1.09002 * 109.47153 * 60.00427 * 8 7 6 32 32 H 1.09004 * 109.46930 * 300.00065 * 9 8 7 33 33 H 1.09002 * 109.47067 * 59.99982 * 9 8 7 34 34 H 0.96998 * 119.99999 * 180.02562 * 13 12 10 35 35 H 1.08001 * 120.41751 * 0.02562 * 19 18 2 36 36 H 1.08008 * 119.61521 * 180.25294 * 20 19 18 37 37 H 1.08003 * 119.61480 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.42247 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 6 1.6852 -0.2191 4.9000 9 6 2.1951 -0.9404 6.1493 10 6 1.6929 -0.2298 7.3798 11 1 1.0724 0.6486 7.2806 12 6 2.0256 -0.7012 8.6320 13 7 2.7816 -1.7705 8.7527 14 14 1.4036 0.1800 10.1571 15 1 0.0949 -0.3939 10.5613 16 1 2.3816 0.0083 11.2614 17 1 1.2398 1.6259 9.8613 18 6 2.0324 -0.7105 -1.2304 19 6 1.7122 -2.0393 -1.4631 20 6 2.1869 -2.6563 -2.6051 21 7 2.9439 -1.9992 -3.4618 22 6 3.2729 -0.7366 -3.2701 23 6 2.8304 -0.0524 -2.1539 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.1488 0.5385 2.5436 28 1 1.8309 -1.9683 3.6506 29 1 3.2846 -0.9413 3.6510 30 1 2.0493 0.8083 4.8999 31 1 0.5951 -0.2183 4.9001 32 1 1.8313 -1.9679 6.1496 33 1 3.2851 -0.9408 6.1490 34 1 3.0153 -2.1023 9.6337 35 1 1.0961 -2.5840 -0.7631 36 1 1.9386 -3.6900 -2.7958 37 1 3.8953 -0.2314 -3.9939 38 1 3.1035 0.9814 -2.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038127.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:40 Heat of formation + Delta-G solvation = -26.889486 kcal Electronic energy + Delta-G solvation = -18607.333357 eV Core-core repulsion = 15641.805281 eV Total energy + Delta-G solvation = -2965.528076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71303 -39.32999 -35.61038 -34.89365 -33.36963 -31.50108 -31.34121 -30.36736 -26.86088 -25.26447 -23.62464 -23.44411 -22.05615 -20.74677 -19.74322 -17.28818 -17.11706 -16.38777 -16.08207 -15.82072 -15.36089 -15.23408 -14.48480 -14.33002 -14.05451 -13.75644 -13.57429 -13.51507 -12.65210 -12.38968 -12.31959 -12.01103 -11.82094 -11.76588 -11.42437 -10.93456 -10.78035 -10.62901 -9.98958 -9.91739 -9.73827 -9.62614 -9.37725 -9.23731 -9.14524 -8.85439 -8.40673 -6.05146 -4.08578 1.01871 1.09183 2.66328 3.26066 3.28238 3.34905 3.37577 3.73809 4.16481 4.33534 4.41048 4.46898 4.75222 4.80676 4.96606 5.01091 5.03834 5.30644 5.30813 5.42999 5.49207 5.64558 5.66928 5.71618 5.73598 5.86148 6.10218 6.17596 6.40654 6.53989 6.55970 6.76585 6.94969 7.59343 7.61127 7.71544 7.83575 7.93212 8.28296 8.34686 8.98100 9.55884 11.06140 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.051387 B = 0.002934 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.757238 B = 9541.071972 C = 9767.389721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 H 0.108 0.892 4 C 0.512 3.488 5 O -0.535 6.535 6 N -0.723 5.723 7 C 0.116 3.884 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.021 4.021 19 C -0.136 4.136 20 C 0.095 3.905 21 N -0.488 5.488 22 C 0.093 3.907 23 C -0.167 4.167 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.398 0.602 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 5.095 -21.527 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 H 0.126 0.874 4 C 0.296 3.704 5 O -0.412 6.412 6 N -0.374 5.374 7 C -0.006 4.006 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.029 4.029 19 C -0.156 4.156 20 C -0.061 4.061 21 N -0.197 5.197 22 C -0.064 4.064 23 C -0.187 4.187 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.232 0.768 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.548 3.819 -22.194 22.798 hybrid contribution -0.791 1.267 1.864 2.389 sum -4.339 5.086 -20.329 21.400 Atomic orbital electron populations 1.21798 0.91501 1.03396 1.03176 1.20364 0.98106 1.00439 0.90848 0.87430 1.20303 0.80694 0.84868 0.84490 1.90737 1.37592 1.26160 1.86666 1.46190 1.53252 1.32005 1.05938 1.21664 0.99307 0.96538 0.83123 1.21890 1.00185 0.99509 0.94266 1.19030 0.96673 0.95684 0.89999 1.21195 1.31710 1.12338 0.90918 0.92642 1.25032 0.95128 0.95073 0.99228 1.69963 1.36678 1.22985 1.23627 0.86579 0.78603 0.80004 0.82710 1.20635 1.21180 1.19888 1.19736 0.95010 0.94163 0.94026 1.21940 1.00837 0.94716 0.98091 1.22722 0.93344 0.99895 0.90185 1.67640 1.12091 1.09117 1.30899 1.22677 0.97268 0.90473 0.95964 1.22013 0.99251 1.01521 0.95875 0.91199 0.91599 0.91123 0.76772 0.91722 0.91761 0.92718 0.92702 0.96290 0.96286 0.92884 0.84983 0.82810 0.82867 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.91 37.16 0.33 -0.71 16 2 C -0.08 -0.73 2.93 -92.92 -0.27 -1.00 16 3 H 0.11 0.80 7.95 -51.93 -0.41 0.38 16 4 C 0.51 6.99 7.04 -10.98 -0.08 6.91 16 5 O -0.53 -9.59 15.14 5.56 0.08 -9.51 16 6 N -0.72 -9.57 5.45 -60.30 -0.33 -9.89 16 7 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 8 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 11 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 C -0.02 -0.23 4.41 -104.32 -0.46 -0.69 16 19 C -0.14 -1.56 8.07 -39.44 -0.32 -1.87 16 20 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 21 N -0.49 -5.91 10.36 -13.25 -0.14 -6.05 16 22 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 23 C -0.17 -1.61 9.76 -39.44 -0.39 -1.99 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.53 7.50 -51.93 -0.39 0.14 16 26 H 0.07 0.45 7.56 -51.93 -0.39 0.05 16 27 H 0.40 4.09 7.89 -40.82 -0.32 3.77 16 28 H 0.06 1.17 8.14 -51.94 -0.42 0.75 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.13 1.46 7.65 -52.49 -0.40 1.06 16 36 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.13 0.93 8.01 -52.48 -0.42 0.51 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -33.55 324.78 -7.74 -41.29 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.68 Total: -0.09 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.29 Total: -10.98 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.27 Total: -41.85 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.55 -7.74 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038127.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.402 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds