Wall clock time and date at job start Mon Mar 30 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 O 1.21280 * 120.00255 * 119.99948 * 4 2 1 6 6 N 1.34779 * 120.00378 * 299.99920 * 4 2 1 7 7 C 1.46497 * 120.00488 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47188 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.47143 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47292 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99742 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99873 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00416 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99720 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47103 * 89.99986 * 14 12 10 16 16 H 1.48498 * 109.46997 * 209.99993 * 14 12 10 17 17 H 1.48501 * 109.47418 * 330.00122 * 14 12 10 18 18 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 19 19 C 1.38647 * 120.79192 * 299.72364 * 18 2 1 20 20 C 1.38206 * 119.15983 * 179.75373 * 19 18 2 21 21 N 1.31867 * 120.76697 * 0.53174 * 20 19 18 22 22 C 1.31872 * 121.72338 * 359.73753 * 21 20 19 23 23 C 1.38200 * 120.76643 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 0.97003 * 119.99556 * 0.02562 * 6 4 2 28 28 H 1.08988 * 109.47204 * 300.00557 * 7 6 4 29 29 H 1.09002 * 109.46725 * 60.00113 * 7 6 4 30 30 H 1.09004 * 109.47261 * 300.00255 * 8 7 6 31 31 H 1.09002 * 109.47153 * 60.00427 * 8 7 6 32 32 H 1.09004 * 109.46930 * 300.00065 * 9 8 7 33 33 H 1.09002 * 109.47067 * 59.99982 * 9 8 7 34 34 H 0.96998 * 119.99999 * 180.02562 * 13 12 10 35 35 H 1.08001 * 120.41751 * 0.02562 * 19 18 2 36 36 H 1.08008 * 119.61521 * 180.25294 * 20 19 18 37 37 H 1.08003 * 119.61480 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.42247 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 6 1.6852 -0.2191 4.9000 9 6 2.1951 -0.9404 6.1493 10 6 1.6929 -0.2298 7.3798 11 1 1.0724 0.6486 7.2806 12 6 2.0256 -0.7012 8.6320 13 7 2.7816 -1.7705 8.7527 14 14 1.4036 0.1800 10.1571 15 1 0.0949 -0.3939 10.5613 16 1 2.3816 0.0083 11.2614 17 1 1.2398 1.6259 9.8613 18 6 2.0324 -0.7105 -1.2304 19 6 1.7122 -2.0393 -1.4631 20 6 2.1869 -2.6563 -2.6051 21 7 2.9439 -1.9992 -3.4618 22 6 3.2729 -0.7366 -3.2701 23 6 2.8304 -0.0524 -2.1539 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.1488 0.5385 2.5436 28 1 1.8309 -1.9683 3.6506 29 1 3.2846 -0.9413 3.6510 30 1 2.0493 0.8083 4.8999 31 1 0.5951 -0.2183 4.9001 32 1 1.8313 -1.9679 6.1496 33 1 3.2851 -0.9408 6.1490 34 1 3.0153 -2.1023 9.6337 35 1 1.0961 -2.5840 -0.7631 36 1 1.9386 -3.6900 -2.7958 37 1 3.8953 -0.2314 -3.9939 38 1 3.1035 0.9814 -2.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601038127.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:39 Heat of formation + Delta-G solvation = -49.116617 kcal Electronic energy + Delta-G solvation = -18608.297198 eV Core-core repulsion = 15641.805281 eV Total energy + Delta-G solvation = -2966.491917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60212 -40.34736 -37.04146 -35.79628 -35.20116 -33.09543 -32.12606 -31.33050 -28.57789 -26.13116 -25.06882 -24.36175 -23.15400 -22.32073 -20.89531 -18.62090 -18.17326 -17.88535 -17.03931 -16.76443 -16.61105 -16.47523 -16.20092 -15.49696 -15.05557 -14.69416 -14.51506 -14.30581 -14.20456 -13.78678 -13.65836 -13.28437 -13.05810 -12.74999 -12.62254 -12.54550 -12.36963 -12.18026 -11.67750 -11.57533 -11.24224 -10.89663 -10.56145 -10.48639 -10.41136 -10.11282 -10.01779 -8.20165 -6.31847 0.24355 0.28276 1.41731 1.42966 1.53920 1.59744 2.18675 2.42313 2.92216 3.13817 3.39636 3.62139 3.69218 3.96355 4.08241 4.18400 4.19957 4.24689 4.30156 4.33757 4.54425 4.71646 4.78704 4.84289 4.91608 4.93719 4.98999 5.06367 5.16615 5.23199 5.40483 5.42964 5.52343 5.69923 5.80406 5.83631 6.21309 6.56306 6.86180 7.04624 7.24026 7.38134 8.92009 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.051387 B = 0.002934 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.757238 B = 9541.071972 C = 9767.389721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 H 0.140 0.860 4 C 0.510 3.490 5 O -0.583 6.583 6 N -0.711 5.711 7 C 0.130 3.870 8 C -0.101 4.101 9 C 0.023 3.977 10 C -0.540 4.540 11 H 0.068 0.932 12 C -0.004 4.004 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.259 1.259 18 C -0.035 4.035 19 C -0.151 4.151 20 C 0.080 3.920 21 N -0.514 5.514 22 C 0.084 3.916 23 C -0.164 4.164 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.417 0.583 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.070 0.930 32 H -0.009 1.009 33 H -0.010 1.010 34 H 0.263 0.737 35 H 0.126 0.874 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 7.845 -22.084 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 H 0.158 0.842 4 C 0.297 3.703 5 O -0.463 6.463 6 N -0.363 5.363 7 C 0.006 3.994 8 C -0.139 4.139 9 C -0.015 4.015 10 C -0.578 4.578 11 H 0.086 0.914 12 C -0.202 4.202 13 N -0.577 5.577 14 Si 0.792 3.208 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.183 1.183 18 C -0.044 4.044 19 C -0.171 4.171 20 C -0.075 4.075 21 N -0.223 5.223 22 C -0.073 4.073 23 C -0.184 4.184 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.254 0.746 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.184 0.816 37 H 0.198 0.802 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.794 6.607 -22.770 24.189 hybrid contribution -0.377 0.383 1.992 2.063 sum -5.171 6.990 -20.778 22.524 Atomic orbital electron populations 1.21833 0.89675 1.03220 1.04897 1.20389 0.99421 1.01003 0.87666 0.84232 1.21081 0.79570 0.84243 0.85419 1.90724 1.39773 1.28418 1.87344 1.45937 1.53259 1.32302 1.04776 1.21205 0.98146 0.95913 0.84143 1.21591 1.00851 0.99370 0.92069 1.18951 0.94894 0.94886 0.92766 1.21692 1.31544 1.12706 0.91886 0.91385 1.26036 0.95282 0.95825 1.03043 1.70114 1.38244 1.24818 1.24495 0.85414 0.77987 0.79331 0.78109 1.19807 1.21156 1.18296 1.20016 0.95387 0.94127 0.94858 1.22021 1.01381 0.95518 0.98195 1.22979 0.93551 1.00706 0.90313 1.67666 1.12807 1.10326 1.31538 1.23218 0.97213 0.90062 0.96821 1.22359 0.98065 1.02897 0.95063 0.89279 0.92805 0.89576 0.74573 0.93402 0.93553 0.91243 0.91148 0.99105 0.99140 0.92830 0.85565 0.81581 0.80229 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.91 71.98 0.64 -1.01 16 2 C -0.06 -1.05 2.93 -12.28 -0.04 -1.09 16 3 H 0.14 1.44 7.95 -2.39 -0.02 1.42 16 4 C 0.51 13.30 7.04 87.66 0.62 13.91 16 5 O -0.58 -21.10 15.14 -3.03 -0.05 -21.14 16 6 N -0.71 -17.60 5.45 -463.08 -2.52 -20.12 16 7 C 0.13 4.41 5.67 86.38 0.49 4.90 16 8 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 9 C 0.02 1.17 4.97 29.85 0.15 1.31 16 10 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 11 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 12 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 13 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16 14 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 18 C -0.04 -0.71 4.41 -19.67 -0.09 -0.80 16 19 C -0.15 -3.45 8.07 22.36 0.18 -3.27 16 20 C 0.08 1.82 11.18 84.68 0.95 2.77 16 21 N -0.51 -12.17 10.36 -195.84 -2.03 -14.20 16 22 C 0.08 1.56 11.18 84.68 0.95 2.51 16 23 C -0.16 -2.77 9.76 22.36 0.22 -2.55 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.79 7.50 -2.39 -0.02 0.77 16 26 H 0.09 0.77 7.56 -2.39 -0.02 0.75 16 27 H 0.42 7.24 7.89 -92.71 -0.73 6.50 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 2.37 8.14 -2.38 -0.02 2.36 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 32 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.13 2.90 7.65 -2.91 -0.02 2.88 16 36 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.16 1.62 8.01 -2.91 -0.02 1.60 16 Total: -1.00 -74.51 324.78 2.95 -71.56 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.31 Total: 11.47 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.92 Total: -16.14 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -4.27 Total: -91.05 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.14 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -74.51 2.95 -71.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038127.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.442 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds