Wall clock time and date at job start Mon Mar 30 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 C 1.50702 * 109.47067 * 239.99867 * 2 1 3 5 5 H 1.07991 * 119.99950 * 273.15509 * 4 2 1 6 6 C 1.37881 * 119.99734 * 93.15512 * 4 2 1 7 7 N 1.31514 * 119.99886 * 173.58065 * 6 4 2 8 8 Si 1.86801 * 120.00136 * 353.57610 * 6 4 2 9 9 H 1.48499 * 109.46988 * 94.75644 * 8 6 4 10 10 H 1.48501 * 109.47110 * 214.75810 * 8 6 4 11 11 H 1.48496 * 109.47065 * 334.75630 * 8 6 4 12 12 N 1.46500 * 109.47420 * 120.00040 * 2 1 3 13 13 C 1.46499 * 120.00029 * 66.42302 * 12 2 1 14 14 C 1.34778 * 119.99661 * 246.43215 * 12 2 1 15 15 O 1.21287 * 119.99543 * 185.23337 * 14 12 2 16 16 C 1.50695 * 120.00286 * 5.22724 * 14 12 2 17 17 H 1.09002 * 109.47135 * 48.49013 * 16 14 12 18 18 C 1.52995 * 109.47170 * 288.48647 * 16 14 12 19 19 C 1.50702 * 109.47068 * 168.48467 * 16 14 12 20 20 C 1.38652 * 120.78428 * 59.72105 * 19 16 14 21 21 C 1.38217 * 119.15738 * 179.75313 * 20 19 16 22 22 N 1.31872 * 120.76310 * 0.53473 * 21 20 19 23 23 C 1.31870 * 121.72696 * 359.74024 * 22 21 20 24 24 C 1.38208 * 120.76319 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47470 * 54.32118 * 1 2 3 26 26 H 1.09004 * 109.47100 * 294.32693 * 1 2 3 27 27 H 1.09002 * 109.47280 * 174.32761 * 1 2 3 28 28 H 0.96998 * 120.00298 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46670 * 95.25858 * 13 12 2 30 30 H 1.08990 * 109.47342 * 215.26149 * 13 12 2 31 31 H 1.08999 * 109.47558 * 335.26800 * 13 12 2 32 32 H 1.09001 * 109.47597 * 59.22342 * 18 16 14 33 33 H 1.09007 * 109.46732 * 179.21912 * 18 16 14 34 34 H 1.08998 * 109.47391 * 299.21477 * 18 16 14 35 35 H 1.07990 * 120.42179 * 0.02562 * 20 19 16 36 36 H 1.07992 * 119.61644 * 180.29280 * 21 20 19 37 37 H 1.07994 * 119.62021 * 180.02562 * 23 22 21 38 38 H 1.08008 * 120.41747 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1638 -1.7823 -1.2193 6 6 2.3241 0.0081 -2.3705 7 7 2.8804 -0.5907 -3.4008 8 14 1.9290 1.8320 -2.4517 9 1 3.1310 2.6163 -2.0707 10 1 1.5225 2.1894 -3.8346 11 1 0.8192 2.1403 -1.5144 12 7 2.0184 -0.6906 1.1961 13 6 1.7842 -2.1275 1.3593 14 6 2.6830 -0.0039 2.1465 15 8 3.1697 -0.5905 3.0899 16 6 2.8216 1.4927 2.0369 17 1 1.8481 1.9328 1.8209 18 6 3.7971 1.8332 0.9085 19 6 3.3452 2.0453 3.3375 20 6 4.5712 1.6366 3.8399 21 6 5.0213 2.1691 5.0333 22 7 4.2947 3.0471 5.6967 23 6 3.1220 3.4543 5.2518 24 6 2.6099 2.9701 4.0630 25 1 -0.3634 0.5993 -0.8347 26 1 -0.3633 0.4234 0.9364 27 1 -0.3634 -1.0226 -0.1016 28 1 3.0854 -0.0854 -4.2030 29 1 2.6553 -2.6799 1.0071 30 1 1.6139 -2.3506 2.4125 31 1 0.9091 -2.4212 0.7796 32 1 3.4253 1.4217 -0.0298 33 1 3.8866 2.9160 0.8202 34 1 4.7743 1.4049 1.1313 35 1 5.1688 0.9147 3.3033 36 1 5.9772 1.8595 5.4290 37 1 2.5556 4.1752 5.8226 38 1 1.6489 3.3077 3.7037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601038395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:31 Heat of formation + Delta-G solvation = -16.299569 kcal Electronic energy + Delta-G solvation = -20305.512079 eV Core-core repulsion = 17340.443216 eV Total energy + Delta-G solvation = -2965.068863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70005 -40.43453 -37.46760 -35.84258 -34.52184 -32.13143 -31.82887 -31.60735 -28.04308 -27.28490 -25.89319 -24.34528 -23.53150 -22.48277 -19.95352 -19.25864 -18.09626 -17.71096 -16.95683 -16.77088 -16.46542 -16.18882 -15.84911 -15.18371 -15.01456 -14.55860 -14.51922 -14.28078 -14.14834 -13.96122 -13.44618 -13.36691 -13.19830 -13.02701 -12.79924 -12.45988 -12.41972 -12.21488 -12.08670 -11.71387 -11.27124 -10.82645 -10.72349 -10.47890 -10.37918 -9.99314 -9.43454 -8.31154 -6.38225 0.25171 0.29979 1.34904 1.39319 1.48047 1.64269 2.24083 2.32661 2.91685 3.08565 3.42749 3.58572 3.64446 3.88507 4.05457 4.22882 4.24741 4.28330 4.32314 4.49978 4.57492 4.68445 4.71001 4.74804 4.78746 4.83408 4.91219 4.94117 5.02597 5.03617 5.22220 5.34924 5.45315 5.53524 5.79813 5.81296 6.10589 6.67891 6.70398 7.04782 7.20307 7.31001 8.84974 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.006553 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.986795 B = 4272.045456 C = 4705.578556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.074 0.926 4 C -0.527 4.527 5 H 0.038 0.962 6 C 0.025 3.975 7 N -0.940 5.940 8 Si 0.909 3.091 9 H -0.256 1.256 10 H -0.290 1.290 11 H -0.219 1.219 12 N -0.592 5.592 13 C 0.101 3.899 14 C 0.509 3.491 15 O -0.584 6.584 16 C -0.067 4.067 17 H 0.123 0.877 18 C -0.153 4.153 19 C -0.034 4.034 20 C -0.146 4.146 21 C 0.085 3.915 22 N -0.508 5.508 23 C 0.089 3.911 24 C -0.165 4.165 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.267 0.733 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.121 0.879 36 H 0.172 0.828 37 H 0.186 0.814 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 9.630 11.348 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.115 3.885 3 H 0.091 0.909 4 C -0.565 4.565 5 H 0.056 0.944 6 C -0.174 4.174 7 N -0.579 5.579 8 Si 0.731 3.269 9 H -0.180 1.180 10 H -0.216 1.216 11 H -0.141 1.141 12 N -0.321 5.321 13 C -0.042 4.042 14 C 0.298 3.702 15 O -0.466 6.466 16 C -0.088 4.088 17 H 0.141 0.859 18 C -0.210 4.210 19 C -0.042 4.042 20 C -0.166 4.166 21 C -0.071 4.071 22 N -0.218 5.218 23 C -0.068 4.068 24 C -0.185 4.185 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.189 0.811 37 H 0.203 0.797 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.238 9.648 12.422 15.887 hybrid contribution -0.122 -0.487 -1.740 1.811 sum -2.359 9.161 10.682 14.269 Atomic orbital electron populations 1.22296 0.96304 1.01824 1.00903 1.19553 0.92674 0.94063 0.82168 0.90896 1.21282 1.44263 0.94816 0.96184 0.94355 1.25779 0.93485 1.03083 0.95087 1.70046 1.42587 1.39122 1.06117 0.86379 0.81389 0.80222 0.78934 1.18017 1.21584 1.14142 1.48246 1.54260 1.09446 1.20185 1.21360 1.00847 0.80859 1.01089 1.20743 0.77682 0.90217 0.81584 1.90613 1.49496 1.71721 1.34762 1.20278 1.02578 0.91662 0.94323 0.85948 1.22061 0.98645 1.03556 0.96763 1.19920 0.94412 0.95171 0.94728 1.22004 0.96952 0.99711 0.97974 1.22971 0.99884 0.92765 0.91443 1.67682 1.07486 1.12545 1.34075 1.23211 0.91845 0.98008 0.93700 1.22338 1.01883 0.97912 0.96329 0.91970 0.92507 0.93100 0.92349 0.94899 0.91537 0.90326 0.91590 0.89133 0.92247 0.86048 0.81137 0.79682 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 8.95 71.98 0.64 -4.70 16 2 C 0.22 8.70 1.31 44.25 0.06 8.76 16 3 H 0.07 2.75 2.01 -2.39 0.00 2.75 16 4 C -0.53 -26.66 8.69 25.60 0.22 -26.43 16 5 H 0.04 2.21 7.44 -2.91 -0.02 2.19 16 6 C 0.02 1.30 5.47 84.66 0.46 1.76 16 7 N -0.94 -54.34 13.96 21.45 0.30 -54.04 16 8 Si 0.91 37.00 25.09 68.60 1.72 38.72 16 9 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.22 -7.57 5.77 99.48 0.57 -7.00 16 12 N -0.59 -23.29 2.75 -826.81 -2.28 -25.57 16 13 C 0.10 3.80 9.12 127.77 1.17 4.97 16 14 C 0.51 19.39 6.89 87.66 0.60 20.00 16 15 O -0.58 -24.90 14.51 -3.05 -0.04 -24.95 16 16 C -0.07 -2.07 2.08 -12.29 -0.03 -2.10 16 17 H 0.12 3.21 7.34 -2.39 -0.02 3.19 16 18 C -0.15 -4.81 8.60 71.98 0.62 -4.19 16 19 C -0.03 -0.97 4.53 -19.67 -0.09 -1.06 16 20 C -0.15 -4.35 7.97 22.36 0.18 -4.17 16 21 C 0.09 2.28 11.18 84.68 0.95 3.22 16 22 N -0.51 -13.62 10.36 -195.84 -2.03 -15.65 16 23 C 0.09 1.99 11.18 84.68 0.95 2.94 16 24 C -0.17 -3.79 9.76 22.36 0.22 -3.57 16 25 H 0.06 2.10 6.58 -2.39 -0.02 2.08 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.77 7.15 -2.39 -0.02 1.75 16 28 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 2.31 7.67 -2.39 -0.02 2.29 16 31 H 0.08 2.77 6.91 -2.39 -0.02 2.75 16 32 H 0.07 2.42 3.87 -2.39 -0.01 2.41 16 33 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.06 1.90 7.47 -2.39 -0.02 1.88 16 35 H 0.12 3.83 7.37 -2.92 -0.02 3.81 16 36 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.16 2.66 8.01 -2.91 -0.02 2.64 16 Total: -1.00 -65.04 303.05 4.55 -60.49 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.93 Total: 25.57 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.95 Total: -4.58 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -4.01 Total: -95.26 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.04 Total: -24.95 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 1.72 Total: 38.72 kcal Total: -65.04 4.55 -60.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.193 kcal (2) G-P(sol) polarization free energy of solvation -65.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds