Wall clock time and date at job start Mon Mar 30 2020 04:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47525 * 2 1 4 4 C 1.50704 * 109.47471 * 120.00081 * 2 1 3 5 5 H 1.07991 * 120.00338 * 119.99466 * 4 2 1 6 6 C 1.37881 * 119.99758 * 300.00294 * 4 2 1 7 7 N 1.31507 * 119.99908 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 119.99915 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.46838 * 90.00201 * 8 6 4 10 10 H 1.48501 * 109.46812 * 210.00208 * 8 6 4 11 11 H 1.48500 * 109.47118 * 330.00214 * 8 6 4 12 12 N 1.46497 * 109.47292 * 240.00201 * 2 1 3 13 13 C 1.46507 * 119.99808 * 294.20225 * 12 2 1 14 14 C 1.34779 * 120.00530 * 114.20551 * 12 2 1 15 15 O 1.21277 * 120.00435 * 184.20433 * 14 12 2 16 16 C 1.50706 * 119.99540 * 3.93414 * 14 12 2 17 17 H 1.09004 * 109.46651 * 310.66428 * 16 14 12 18 18 C 1.52998 * 109.47168 * 70.66296 * 16 14 12 19 19 C 1.50701 * 109.46730 * 190.66594 * 16 14 12 20 20 C 1.38647 * 120.78989 * 299.71272 * 19 16 14 21 21 C 1.38201 * 119.15929 * 179.75846 * 20 19 16 22 22 N 1.31873 * 120.76880 * 0.53537 * 21 20 19 23 23 C 1.31873 * 121.72210 * 359.73928 * 22 21 20 24 24 C 1.38203 * 120.76438 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47110 * 299.99580 * 1 2 3 27 27 H 1.08996 * 109.47100 * 60.00119 * 1 2 3 28 28 H 0.97006 * 120.00036 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47239 * 275.09559 * 13 12 2 30 30 H 1.08999 * 109.46840 * 35.09698 * 13 12 2 31 31 H 1.09001 * 109.46816 * 155.09249 * 13 12 2 32 32 H 1.09003 * 109.46815 * 57.59386 * 18 16 14 33 33 H 1.08999 * 109.46862 * 177.58973 * 18 16 14 34 34 H 1.09002 * 109.47115 * 297.59021 * 18 16 14 35 35 H 1.07999 * 120.41727 * 0.02562 * 20 19 16 36 36 H 1.08004 * 119.61785 * 180.25186 * 21 20 19 37 37 H 1.07999 * 119.61707 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.42061 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8596 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8020 0.8743 2.6993 10 1 0.9771 1.9953 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0183 -0.6905 -1.1962 13 6 1.7721 -2.1248 -1.3658 14 6 2.6942 -0.0066 -2.1406 15 8 3.0320 -0.5602 -3.1653 16 6 3.0248 1.4480 -1.9257 17 1 2.1277 1.9820 -1.6124 18 6 4.0972 1.5725 -0.8416 19 6 3.5393 2.0414 -3.2119 20 6 4.6809 1.5399 -3.8182 21 6 5.1200 2.1063 -4.9998 22 7 4.4728 3.1182 -5.5443 23 6 3.3871 3.6243 -4.9927 24 6 2.8856 3.1057 -3.8139 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9032 -0.5280 4.4376 29 1 2.5472 -2.6902 -0.8486 30 1 0.7977 -2.3780 -0.9481 31 1 1.7881 -2.3731 -2.4270 32 1 4.9789 1.0030 -1.1356 33 1 4.3671 2.6211 -0.7163 34 1 3.7096 1.1822 0.0994 35 1 5.2176 0.7142 -3.3749 36 1 6.0060 1.7188 -5.4806 37 1 2.8836 4.4530 -5.4682 38 1 1.9963 3.5248 -3.3668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:35 Heat of formation + Delta-G solvation = 5.525088 kcal Electronic energy + Delta-G solvation = -20207.076084 eV Core-core repulsion = 17242.953609 eV Total energy + Delta-G solvation = -2964.122475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44087 -39.13252 -35.90166 -34.56565 -32.66472 -31.09390 -30.41174 -30.21815 -26.57790 -25.39678 -24.54992 -23.29305 -22.20690 -21.21504 -18.42754 -17.34644 -16.55618 -16.41738 -15.72990 -15.56312 -15.21839 -14.88287 -14.24626 -13.80976 -13.66354 -13.32518 -13.20364 -12.98779 -12.60501 -12.42133 -12.03476 -11.86825 -11.76424 -11.62740 -11.38723 -11.10474 -10.95761 -10.75042 -10.30957 -9.87021 -9.59886 -9.45790 -9.34640 -9.10950 -8.93679 -8.80453 -7.85129 -6.31025 -4.34027 1.28736 1.39638 3.08200 3.13091 3.15512 3.22323 3.67276 4.01994 4.16052 4.55967 4.65833 4.82821 4.98750 5.09251 5.23151 5.30845 5.40492 5.46728 5.74696 5.87848 5.91028 5.94230 6.05966 6.09308 6.11778 6.15702 6.18152 6.28005 6.42149 6.47646 6.54325 6.66420 6.81027 6.83904 7.15981 7.44568 7.96806 8.07685 8.37873 8.68327 8.77349 9.28055 10.81324 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.006005 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.566568 B = 4661.529928 C = 5016.706763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.221 3.779 3 H 0.055 0.945 4 C -0.532 4.532 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.880 3.120 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.582 5.582 13 C 0.096 3.904 14 C 0.517 3.483 15 O -0.562 6.562 16 C -0.074 4.074 17 H 0.102 0.898 18 C -0.148 4.148 19 C -0.016 4.016 20 C -0.130 4.130 21 C 0.090 3.910 22 N -0.492 5.492 23 C 0.090 3.910 24 C -0.169 4.169 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.268 0.732 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 6.684 -9.712 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.119 3.881 3 H 0.073 0.927 4 C -0.570 4.570 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.710 3.290 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.312 5.312 13 C -0.047 4.047 14 C 0.304 3.696 15 O -0.442 6.442 16 C -0.095 4.095 17 H 0.120 0.880 18 C -0.205 4.205 19 C -0.024 4.024 20 C -0.150 4.150 21 C -0.066 4.066 22 N -0.201 5.201 23 C -0.067 4.067 24 C -0.189 4.189 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.152 0.848 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.964 6.716 -10.786 12.742 hybrid contribution -1.134 0.326 1.299 1.755 sum -0.170 7.041 -9.486 11.815 Atomic orbital electron populations 1.22520 0.99046 1.01691 0.99247 1.19545 0.90487 0.94206 0.83869 0.92730 1.21109 1.33092 1.14728 0.88099 0.89933 1.24889 0.95436 0.96564 0.95659 1.69861 1.44603 1.39868 0.98095 0.86978 0.80921 0.83613 0.77486 1.20251 1.21975 1.19051 1.47841 1.53356 1.09391 1.20612 1.21415 1.01405 0.80973 1.00870 1.20159 0.78171 0.88196 0.83041 1.90629 1.55001 1.70909 1.27643 1.20315 1.01088 0.94367 0.93766 0.88002 1.21924 0.97456 1.02382 0.98729 1.19906 0.93919 0.93736 0.94887 1.21969 0.96703 0.99812 0.96535 1.22677 0.98775 0.92254 0.92921 1.67610 1.08037 1.11073 1.33429 1.22606 0.92713 0.98655 0.92767 1.22031 1.01413 0.97920 0.97559 0.92182 0.93018 0.94762 0.92215 0.92827 0.91477 0.91826 0.92082 0.91904 0.88629 0.84818 0.83032 0.83091 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 8.74 37.16 0.32 -2.91 16 2 C 0.22 4.59 1.36 -69.08 -0.09 4.50 16 3 H 0.06 1.10 3.48 -51.93 -0.18 0.92 16 4 C -0.53 -13.17 8.61 -34.44 -0.30 -13.47 16 5 H 0.08 2.28 7.43 -52.49 -0.39 1.89 16 6 C 0.08 2.02 5.45 -17.82 -0.10 1.93 16 7 N -0.89 -24.80 13.96 55.43 0.77 -24.03 16 8 Si 0.88 19.41 24.37 -169.99 -4.14 15.27 16 9 H -0.28 -5.99 6.87 56.52 0.39 -5.60 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -5.40 6.53 56.52 0.37 -5.03 16 12 N -0.58 -11.46 2.75 -175.26 -0.48 -11.94 16 13 C 0.10 1.76 9.62 59.85 0.58 2.34 16 14 C 0.52 9.87 6.87 -10.98 -0.08 9.80 16 15 O -0.56 -11.77 14.34 5.56 0.08 -11.69 16 16 C -0.07 -1.20 2.06 -92.92 -0.19 -1.39 16 17 H 0.10 1.55 6.93 -51.93 -0.36 1.19 16 18 C -0.15 -2.31 8.61 37.16 0.32 -1.99 16 19 C -0.02 -0.24 4.51 -104.32 -0.47 -0.71 16 20 C -0.13 -1.95 8.01 -39.44 -0.32 -2.27 16 21 C 0.09 1.25 11.18 -17.55 -0.20 1.05 16 22 N -0.49 -7.15 10.36 -13.25 -0.14 -7.28 16 23 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 24 C -0.17 -2.26 9.76 -39.44 -0.39 -2.64 16 25 H 0.06 1.14 6.90 -51.93 -0.36 0.78 16 26 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.01 7.81 -51.93 -0.41 0.60 16 30 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 31 H 0.06 1.12 7.23 -51.93 -0.38 0.74 16 32 H 0.06 0.93 7.55 -51.93 -0.39 0.54 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.72 5.89 -51.93 -0.31 1.42 16 35 H 0.13 2.00 7.44 -52.49 -0.39 1.61 16 36 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.13 1.45 8.01 -52.49 -0.42 1.03 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -29.31 301.67 -5.43 -34.74 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.97 Total: 5.19 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.10 Total: -4.81 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.15 Total: -43.25 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.14 Total: 15.27 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.31 -5.43 -34.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.269 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds