Wall clock time and date at job start Mon Mar 30 2020 04:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47525 * 2 1 4 4 C 1.50704 * 109.47471 * 120.00081 * 2 1 3 5 5 H 1.07991 * 120.00338 * 119.99466 * 4 2 1 6 6 C 1.37881 * 119.99758 * 300.00294 * 4 2 1 7 7 N 1.31507 * 119.99908 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 119.99915 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.46838 * 90.00201 * 8 6 4 10 10 H 1.48501 * 109.46812 * 210.00208 * 8 6 4 11 11 H 1.48500 * 109.47118 * 330.00214 * 8 6 4 12 12 N 1.46497 * 109.47292 * 240.00201 * 2 1 3 13 13 C 1.46507 * 119.99808 * 294.20225 * 12 2 1 14 14 C 1.34779 * 120.00530 * 114.20551 * 12 2 1 15 15 O 1.21277 * 120.00435 * 184.20433 * 14 12 2 16 16 C 1.50706 * 119.99540 * 3.93414 * 14 12 2 17 17 H 1.09004 * 109.46651 * 310.66428 * 16 14 12 18 18 C 1.52998 * 109.47168 * 70.66296 * 16 14 12 19 19 C 1.50701 * 109.46730 * 190.66594 * 16 14 12 20 20 C 1.38647 * 120.78989 * 299.71272 * 19 16 14 21 21 C 1.38201 * 119.15929 * 179.75846 * 20 19 16 22 22 N 1.31873 * 120.76880 * 0.53537 * 21 20 19 23 23 C 1.31873 * 121.72210 * 359.73928 * 22 21 20 24 24 C 1.38203 * 120.76438 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47110 * 299.99580 * 1 2 3 27 27 H 1.08996 * 109.47100 * 60.00119 * 1 2 3 28 28 H 0.97006 * 120.00036 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47239 * 275.09559 * 13 12 2 30 30 H 1.08999 * 109.46840 * 35.09698 * 13 12 2 31 31 H 1.09001 * 109.46816 * 155.09249 * 13 12 2 32 32 H 1.09003 * 109.46815 * 57.59386 * 18 16 14 33 33 H 1.08999 * 109.46862 * 177.58973 * 18 16 14 34 34 H 1.09002 * 109.47115 * 297.59021 * 18 16 14 35 35 H 1.07999 * 120.41727 * 0.02562 * 20 19 16 36 36 H 1.08004 * 119.61785 * 180.25186 * 21 20 19 37 37 H 1.07999 * 119.61707 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.42061 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8596 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8020 0.8743 2.6993 10 1 0.9771 1.9953 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0183 -0.6905 -1.1962 13 6 1.7721 -2.1248 -1.3658 14 6 2.6942 -0.0066 -2.1406 15 8 3.0320 -0.5602 -3.1653 16 6 3.0248 1.4480 -1.9257 17 1 2.1277 1.9820 -1.6124 18 6 4.0972 1.5725 -0.8416 19 6 3.5393 2.0414 -3.2119 20 6 4.6809 1.5399 -3.8182 21 6 5.1200 2.1063 -4.9998 22 7 4.4728 3.1182 -5.5443 23 6 3.3871 3.6243 -4.9927 24 6 2.8856 3.1057 -3.8139 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9032 -0.5280 4.4376 29 1 2.5472 -2.6902 -0.8486 30 1 0.7977 -2.3780 -0.9481 31 1 1.7881 -2.3731 -2.4270 32 1 4.9789 1.0030 -1.1356 33 1 4.3671 2.6211 -0.7163 34 1 3.7096 1.1822 0.0994 35 1 5.2176 0.7142 -3.3749 36 1 6.0060 1.7188 -5.4806 37 1 2.8836 4.4530 -5.4682 38 1 1.9963 3.5248 -3.3668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601038397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:35 Heat of formation + Delta-G solvation = -12.926594 kcal Electronic energy + Delta-G solvation = -20207.876209 eV Core-core repulsion = 17242.953609 eV Total energy + Delta-G solvation = -2964.922600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68851 -40.44200 -37.52836 -35.80597 -34.54975 -32.11473 -31.90574 -31.57751 -28.06115 -27.19115 -25.81263 -24.33475 -23.66416 -22.61737 -19.88175 -19.00880 -18.10278 -17.72730 -17.03108 -16.85283 -16.61348 -16.16911 -15.82454 -15.14624 -15.05868 -14.62362 -14.47876 -14.29638 -14.10338 -14.04533 -13.60112 -13.22155 -13.20118 -12.97659 -12.89676 -12.48877 -12.44593 -12.16944 -11.98181 -11.49234 -11.35759 -10.86020 -10.71986 -10.45489 -10.37734 -9.98841 -9.46778 -8.29070 -6.36359 0.26329 0.31101 1.36355 1.39961 1.50632 1.63249 2.22893 2.32420 2.93264 3.05619 3.46103 3.56507 3.65108 3.88490 4.11144 4.24713 4.29973 4.30828 4.35945 4.51520 4.56693 4.64494 4.71826 4.74724 4.80631 4.83373 4.89318 4.94590 4.95646 5.05515 5.24850 5.30053 5.46713 5.48031 5.74241 5.82207 6.12861 6.67421 6.69608 7.05621 7.18126 7.32756 8.86990 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.006005 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.566568 B = 4661.529928 C = 5016.706763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.226 3.774 3 H 0.070 0.930 4 C -0.526 4.526 5 H 0.038 0.962 6 C 0.024 3.976 7 N -0.941 5.941 8 Si 0.936 3.064 9 H -0.266 1.266 10 H -0.301 1.301 11 H -0.230 1.230 12 N -0.590 5.590 13 C 0.097 3.903 14 C 0.513 3.487 15 O -0.583 6.583 16 C -0.068 4.068 17 H 0.119 0.881 18 C -0.142 4.142 19 C -0.033 4.033 20 C -0.146 4.146 21 C 0.085 3.915 22 N -0.509 5.509 23 C 0.089 3.911 24 C -0.167 4.167 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.267 0.733 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.172 0.828 37 H 0.185 0.815 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 9.346 -11.217 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.123 3.877 3 H 0.087 0.913 4 C -0.564 4.564 5 H 0.056 0.944 6 C -0.175 4.175 7 N -0.581 5.581 8 Si 0.762 3.238 9 H -0.193 1.193 10 H -0.229 1.229 11 H -0.153 1.153 12 N -0.319 5.319 13 C -0.046 4.046 14 C 0.302 3.698 15 O -0.464 6.464 16 C -0.089 4.089 17 H 0.137 0.863 18 C -0.200 4.200 19 C -0.041 4.041 20 C -0.166 4.166 21 C -0.071 4.071 22 N -0.219 5.219 23 C -0.068 4.068 24 C -0.187 4.187 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.189 0.811 37 H 0.202 0.798 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.468 9.378 -12.326 15.495 hybrid contribution -0.603 -0.594 1.707 1.905 sum -1.070 8.783 -10.619 13.822 Atomic orbital electron populations 1.22455 0.97253 1.02122 1.00549 1.19436 0.91721 0.94221 0.82308 0.91271 1.21251 1.31805 1.13293 0.90095 0.94399 1.25701 0.96890 0.99798 0.95098 1.70023 1.47006 1.42266 0.98764 0.86055 0.79218 0.80215 0.78282 1.19256 1.22858 1.15308 1.47916 1.53735 1.09751 1.20516 1.21411 1.01323 0.80689 1.01157 1.20726 0.77218 0.89481 0.82394 1.90614 1.55522 1.71787 1.28514 1.20301 1.01797 0.92228 0.94594 0.86279 1.21857 0.97113 1.03775 0.97236 1.19950 0.94491 0.94852 0.94829 1.21993 0.97217 1.00068 0.97302 1.22984 0.99397 0.92103 0.92589 1.67684 1.08882 1.11365 1.33938 1.23190 0.92068 0.98970 0.92562 1.22328 1.01910 0.96999 0.97429 0.92439 0.93239 0.91710 0.92363 0.94397 0.90603 0.91072 0.92617 0.89350 0.91173 0.85869 0.81093 0.79827 0.82292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.91 8.74 71.98 0.63 -5.28 16 2 C 0.23 9.00 1.36 44.25 0.06 9.06 16 3 H 0.07 2.60 3.48 -2.39 -0.01 2.59 16 4 C -0.53 -26.39 8.61 25.60 0.22 -26.17 16 5 H 0.04 2.19 7.43 -2.92 -0.02 2.17 16 6 C 0.02 1.25 5.45 84.66 0.46 1.71 16 7 N -0.94 -54.18 13.96 21.45 0.30 -53.88 16 8 Si 0.94 38.57 24.37 68.60 1.67 40.25 16 9 H -0.27 -10.56 6.87 99.48 0.68 -9.88 16 10 H -0.30 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.23 -8.10 6.53 99.48 0.65 -7.46 16 12 N -0.59 -22.72 2.75 -826.79 -2.28 -25.00 16 13 C 0.10 3.58 9.62 127.77 1.23 4.81 16 14 C 0.51 19.00 6.87 87.66 0.60 19.60 16 15 O -0.58 -24.09 14.34 -3.02 -0.04 -24.13 16 16 C -0.07 -2.05 2.06 -12.28 -0.03 -2.08 16 17 H 0.12 3.15 6.93 -2.38 -0.02 3.14 16 18 C -0.14 -4.25 8.61 71.98 0.62 -3.63 16 19 C -0.03 -0.92 4.51 -19.67 -0.09 -1.01 16 20 C -0.15 -4.20 8.01 22.36 0.18 -4.02 16 21 C 0.08 2.23 11.18 84.68 0.95 3.17 16 22 N -0.51 -13.53 10.36 -195.84 -2.03 -15.56 16 23 C 0.09 1.99 11.18 84.68 0.95 2.93 16 24 C -0.17 -3.85 9.76 22.36 0.22 -3.63 16 25 H 0.06 2.05 6.90 -2.39 -0.02 2.04 16 26 H 0.05 1.79 3.27 -2.39 -0.01 1.79 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 29 H 0.04 1.48 7.81 -2.39 -0.02 1.46 16 30 H 0.08 2.62 6.75 -2.39 -0.02 2.60 16 31 H 0.07 2.49 7.23 -2.39 -0.02 2.47 16 32 H 0.05 1.69 7.55 -2.39 -0.02 1.67 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 2.46 5.89 -2.39 -0.01 2.45 16 35 H 0.12 3.71 7.44 -2.91 -0.02 3.69 16 36 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.16 2.71 8.01 -2.91 -0.02 2.68 16 Total: -1.00 -64.06 301.67 4.60 -59.45 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.98 Total: 23.40 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 6.00 Total: -4.53 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -4.01 Total: -94.44 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.04 Total: -24.13 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.67 Total: 40.25 kcal Total: -64.06 4.60 -59.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.528 kcal (2) G-P(sol) polarization free energy of solvation -64.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds