Wall clock time and date at job start Mon Mar 30 2020 04:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 H 1.08995 * 109.47634 * 300.00249 * 16 14 13 18 18 C 1.53005 * 109.47227 * 60.00516 * 16 14 13 19 19 C 1.50700 * 109.47232 * 180.02562 * 16 14 13 20 20 C 1.38656 * 120.78668 * 299.72241 * 19 16 14 21 21 C 1.38211 * 119.15811 * 179.75593 * 20 19 16 22 22 N 1.31869 * 120.76302 * 0.52680 * 21 20 19 23 23 C 1.31873 * 121.72895 * 359.74719 * 22 21 20 24 24 C 1.38208 * 120.75990 * 359.97371 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.09000 * 109.47299 * 179.97438 * 18 16 14 33 33 H 1.09000 * 109.46536 * 299.99973 * 18 16 14 34 34 H 1.09002 * 109.47367 * 59.99323 * 18 16 14 35 35 H 1.07991 * 120.42160 * 359.97438 * 20 19 16 36 36 H 1.08001 * 119.61604 * 180.25476 * 21 20 19 37 37 H 1.07992 * 119.61533 * 179.97438 * 23 22 21 38 38 H 1.07994 * 120.41102 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 1 0.0673 2.6129 3.4685 18 6 1.0067 4.4820 2.9541 19 6 -1.3616 3.8850 2.5237 20 6 -1.6644 4.8340 1.5592 21 6 -2.9588 5.3094 1.4652 22 7 -3.8968 4.8784 2.2857 23 6 -3.6438 3.9809 3.2182 24 6 -2.3740 3.4561 3.3681 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 0.7180 4.9692 3.8854 33 1 2.0176 4.0856 3.0492 34 1 0.9757 5.2067 2.1404 35 1 -0.8994 5.1945 0.8875 36 1 -3.2038 6.0456 0.7140 37 1 -4.4379 3.6523 3.8722 38 1 -2.1730 2.7216 4.1339 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601444285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:01 Heat of formation + Delta-G solvation = -36.494519 kcal Electronic energy + Delta-G solvation = -19831.744829 eV Core-core repulsion = 16865.800247 eV Total energy + Delta-G solvation = -2965.944582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52314 -40.30102 -37.06745 -35.65297 -34.27692 -32.84761 -32.08846 -31.17075 -28.87047 -26.04800 -25.04727 -24.33055 -23.45329 -21.67573 -20.88726 -18.94667 -17.83927 -17.56525 -17.12639 -16.80102 -16.46884 -16.16509 -15.85841 -15.01904 -14.80258 -14.65068 -14.45624 -14.25770 -13.93001 -13.57041 -13.20665 -13.08245 -12.99681 -12.90399 -12.65096 -12.56415 -12.18356 -12.11917 -12.03887 -11.58250 -11.05444 -10.71792 -10.53599 -10.40063 -10.32005 -9.98965 -9.58836 -8.14956 -6.32349 0.27606 0.33019 1.45774 1.47039 1.54796 1.88626 2.36953 2.63364 3.00370 3.14849 3.47675 3.64728 3.81343 4.11634 4.13915 4.28413 4.33909 4.37302 4.48329 4.56413 4.72682 4.77115 4.81384 4.87360 4.94657 5.06465 5.09005 5.23270 5.26783 5.43526 5.47134 5.57041 5.64836 5.80539 5.83612 5.94924 6.18298 6.76409 7.02822 7.06597 7.35404 7.62823 8.90013 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.004782 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.467865 B = 5853.999106 C = 6143.288755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.702 5.702 14 C 0.502 3.498 15 O -0.581 6.581 16 C -0.067 4.067 17 H 0.132 0.868 18 C -0.135 4.135 19 C -0.028 4.028 20 C -0.151 4.151 21 C 0.082 3.918 22 N -0.512 5.512 23 C 0.086 3.914 24 C -0.166 4.166 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.022 0.978 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.264 0.736 31 H 0.404 0.596 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.121 0.879 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 6.142 13.940 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.351 5.351 14 C 0.289 3.711 15 O -0.462 6.462 16 C -0.088 4.088 17 H 0.150 0.850 18 C -0.193 4.193 19 C -0.037 4.037 20 C -0.171 4.171 21 C -0.074 4.074 22 N -0.222 5.222 23 C -0.071 4.071 24 C -0.186 4.186 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.239 0.761 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.184 0.816 37 H 0.200 0.800 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.209 6.355 13.005 16.170 hybrid contribution 1.982 -0.498 -0.524 2.110 sum -5.227 5.857 12.481 14.745 Atomic orbital electron populations 1.21660 0.97117 0.98949 1.00143 1.21784 0.93560 0.99393 1.01254 1.18310 0.93508 0.89005 0.81499 0.98637 1.21563 0.91488 1.38844 1.06637 0.90894 1.25753 1.03149 0.94433 0.95074 1.70044 1.37110 1.38409 1.09874 0.85460 0.79317 0.78435 0.77491 1.18862 1.21460 1.19652 1.46212 1.15508 1.55958 1.17457 1.20921 0.81769 0.78530 0.89887 1.90690 1.52299 1.60836 1.42352 1.20396 0.92688 0.99635 0.96115 0.85015 1.21781 0.98349 0.96195 1.02946 1.19978 0.95132 0.94123 0.94429 1.21983 0.98503 0.98151 0.98487 1.22938 0.88796 0.98563 0.97088 1.67663 1.36358 1.12783 1.05352 1.23209 0.96501 0.92311 0.95095 1.22332 0.93396 1.01763 1.01096 0.93640 0.93828 0.95912 0.93939 0.91234 0.92700 0.76138 0.89133 0.90287 0.93163 0.86140 0.81577 0.80005 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.82 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 3 C 0.28 13.93 2.24 44.24 0.10 14.03 16 4 H 0.00 -0.26 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -28.09 8.73 25.60 0.22 -27.86 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.92 -51.94 11.29 21.45 0.24 -51.70 16 9 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 N -0.70 -27.03 4.91 -446.11 -2.19 -29.22 16 14 C 0.50 18.31 5.61 87.66 0.49 18.80 16 15 O -0.58 -26.37 12.31 -3.04 -0.04 -26.41 16 16 C -0.07 -1.67 2.93 -12.29 -0.04 -1.70 16 17 H 0.13 2.49 7.94 -2.39 -0.02 2.47 16 18 C -0.14 -2.73 8.91 71.98 0.64 -2.09 16 19 C -0.03 -0.74 4.40 -19.67 -0.09 -0.83 16 20 C -0.15 -4.37 8.09 22.36 0.18 -4.19 16 21 C 0.08 2.24 11.18 84.68 0.95 3.18 16 22 N -0.51 -14.08 10.36 -195.84 -2.03 -16.11 16 23 C 0.09 1.94 11.18 84.68 0.95 2.88 16 24 C -0.17 -3.65 9.76 22.36 0.22 -3.43 16 25 H 0.04 1.94 5.64 -2.39 -0.01 1.92 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.02 1.10 7.85 -2.38 -0.02 1.08 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 3.81 5.95 -2.39 -0.01 3.79 16 30 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.40 12.87 7.96 -92.71 -0.74 12.13 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.46 7.56 -2.39 -0.02 1.44 16 34 H 0.05 1.16 7.47 -2.39 -0.02 1.14 16 35 H 0.12 3.65 7.64 -2.92 -0.02 3.63 16 36 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.16 2.45 8.01 -2.91 -0.02 2.43 16 Total: -1.00 -67.73 312.22 3.18 -64.54 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.32 Total: 26.05 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 4.85 Total: -10.42 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -3.98 Total: -97.03 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.04 Total: -26.41 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -67.73 3.18 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601444285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.047 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds