Wall clock time and date at job start Mon Mar 30 2020 04:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46820 * 2 1 4 4 N 1.46505 * 109.47115 * 119.99401 * 2 1 3 5 5 C 1.39775 * 120.00126 * 274.99991 * 4 2 1 6 6 C 1.38954 * 120.00780 * 179.97438 * 5 4 2 7 7 C 1.38002 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.38905 * 120.00778 * 0.26007 * 7 6 5 9 9 O 1.35795 * 119.99487 * 179.71935 * 8 7 6 10 10 C 1.34806 * 117.00105 * 354.45908 * 9 8 7 11 11 H 1.07995 * 120.00087 * 5.05500 * 10 9 8 12 12 C 1.38623 * 119.99845 * 185.05398 * 10 9 8 13 13 N 1.31578 * 120.00000 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00275 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47127 * 89.99314 * 14 12 10 16 16 H 1.48494 * 109.47053 * 210.00293 * 14 12 10 17 17 H 1.48503 * 109.46852 * 329.99606 * 14 12 10 18 18 C 1.38904 * 120.00733 * 359.48757 * 8 7 6 19 19 C 1.38010 * 120.00499 * 0.51239 * 18 8 7 20 20 C 1.52993 * 109.47156 * 239.99686 * 2 1 3 21 21 C 1.53939 * 113.73787 * 158.76591 * 20 2 1 22 22 N 1.48182 * 86.10273 * 221.95631 * 21 20 2 23 23 C 1.47965 * 90.80232 * 24.59797 * 22 21 20 24 24 H 1.08999 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47203 * 300.00525 * 1 2 3 26 26 H 1.09001 * 109.47421 * 60.00231 * 1 2 3 27 27 H 0.97001 * 119.99403 * 94.99653 * 4 2 1 28 28 H 1.07997 * 119.99624 * 359.96486 * 6 5 4 29 29 H 1.08000 * 120.00051 * 179.97438 * 7 6 5 30 30 H 0.97002 * 120.00447 * 180.02562 * 13 12 10 31 31 H 1.07996 * 119.99809 * 180.25252 * 18 8 7 32 32 H 1.08001 * 120.00161 * 179.72091 * 19 18 8 33 33 H 1.09001 * 112.93965 * 290.33514 * 20 2 1 34 34 H 1.09000 * 113.75531 * 336.24122 * 21 20 2 35 35 H 1.09002 * 113.75912 * 107.59952 * 21 20 2 36 36 H 1.00909 * 111.06995 * 137.51575 * 22 21 20 37 37 H 1.08998 * 113.76175 * 221.08576 * 23 22 21 38 38 H 1.09002 * 113.75679 * 89.71556 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1518 0.0069 2.4002 6 6 2.6145 -0.6480 3.5351 7 6 2.7467 0.0409 4.7235 8 6 2.4123 1.3875 4.7868 9 8 2.5371 2.0638 5.9578 10 6 2.8802 1.3455 7.0457 11 1 3.1221 0.2976 6.9467 12 6 2.9226 1.9520 8.2915 13 7 3.2581 1.2511 9.3534 14 14 2.5036 3.7643 8.4629 15 1 1.0479 3.9141 8.7148 16 1 3.2649 4.3430 9.5989 17 1 2.8652 4.4764 7.2109 18 6 1.9547 2.0438 3.6513 19 6 1.8223 1.3553 2.4625 20 6 2.0400 -0.7213 -1.2491 21 6 3.4849 -0.3525 -1.6311 22 7 2.9994 -0.3205 -3.0308 23 6 1.6207 -0.0476 -2.5683 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 2.2490 -1.6317 1.1527 28 1 2.8704 -1.6961 3.4870 29 1 3.1059 -0.4682 5.6057 30 1 3.2874 1.6753 10.2252 31 1 1.6986 3.0918 3.6996 32 1 1.4623 1.8645 1.5807 33 1 1.8527 -1.7948 -1.2260 34 1 3.8042 0.6193 -1.2547 35 1 4.2072 -1.1446 -1.4336 36 1 3.3775 0.4720 -3.5279 37 1 0.8562 -0.5965 -3.1181 38 1 1.3936 1.0136 -2.4665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686223827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:21 Heat of formation + Delta-G solvation = 35.662711 kcal Electronic energy + Delta-G solvation = -19065.583303 eV Core-core repulsion = 16102.767693 eV Total energy + Delta-G solvation = -2962.815609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08211 -39.04446 -37.23413 -34.86809 -32.26961 -31.04966 -30.09154 -27.55579 -26.96490 -26.10637 -24.89994 -22.68252 -21.91190 -20.44274 -19.81218 -17.78873 -17.39128 -16.98124 -16.17951 -15.81147 -14.98545 -14.43069 -14.26566 -13.86714 -13.71379 -13.61828 -13.24424 -12.98974 -12.77569 -12.67949 -12.19947 -12.15063 -11.99626 -11.75515 -11.54912 -11.13215 -10.92566 -10.84969 -10.74569 -10.56029 -10.09312 -9.36113 -9.28732 -9.15147 -8.54442 -8.25329 -6.50029 -6.30498 -3.94937 2.11381 2.47084 3.28012 3.31468 3.46648 3.61182 3.79488 4.24366 4.32558 4.47432 4.60682 4.96076 5.00274 5.04718 5.10272 5.17402 5.20948 5.30877 5.48690 5.52448 5.55730 5.61137 5.65005 5.74011 5.80934 5.93701 6.13413 6.15286 6.23335 6.43580 6.78125 6.82711 6.87715 7.00467 7.34870 7.48613 7.79586 7.93282 8.10370 8.21697 9.06132 9.72338 10.78134 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045270 B = 0.003647 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.368673 B = 7675.054288 C = 7844.462017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.164 3.836 3 H 0.073 0.927 4 N -0.752 5.752 5 C 0.135 3.865 6 C -0.144 4.144 7 C -0.175 4.175 8 C 0.116 3.884 9 O -0.228 6.228 10 C -0.384 4.384 11 H 0.103 0.897 12 C 0.060 3.940 13 N -0.888 5.888 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.119 4.119 21 C 0.012 3.988 22 N -0.640 5.640 23 C 0.014 3.986 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.391 0.609 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.277 0.723 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.318 0.682 37 H 0.088 0.912 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 -2.081 -20.878 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.091 0.909 4 N -0.386 5.386 5 C 0.037 3.963 6 C -0.166 4.166 7 C -0.195 4.195 8 C 0.065 3.935 9 O -0.135 6.135 10 C -0.460 4.460 11 H 0.120 0.880 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.185 1.185 18 C -0.169 4.169 19 C -0.174 4.174 20 C -0.139 4.139 21 C -0.118 4.118 22 N -0.265 5.265 23 C -0.117 4.117 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.225 0.775 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.313 -2.495 -20.987 21.393 hybrid contribution -0.062 1.154 0.625 1.314 sum -3.375 -1.341 -20.362 20.684 Atomic orbital electron populations 1.22291 0.96332 1.02218 1.01922 1.20739 0.93346 0.96247 0.83980 0.90903 1.44279 1.76234 1.11545 1.06569 1.17434 1.01269 0.91612 0.86005 1.20290 1.05526 0.98898 0.91921 1.21112 1.05403 0.94692 0.98274 1.18965 0.96712 0.90777 0.87025 1.83570 1.79235 1.36342 1.14320 1.20704 1.46113 0.95893 0.83320 0.87960 1.24423 0.96313 0.99813 0.93671 1.69661 1.47308 1.36826 0.98957 0.86185 0.78675 0.83819 0.78206 1.20076 1.21011 1.18473 1.20009 1.06068 0.99728 0.91142 1.20174 1.07232 0.92759 0.97223 1.23260 0.95733 1.01257 0.93635 1.23766 0.97237 1.01697 0.89106 1.66927 1.03895 1.42962 1.12702 1.23681 0.93346 0.99766 0.94923 0.92542 0.91878 0.92466 0.77532 0.87365 0.84919 0.91311 0.86646 0.87054 0.88227 0.91263 0.89462 0.86980 0.89391 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.25 37.16 0.34 -1.28 16 2 C 0.16 1.63 2.07 -67.93 -0.14 1.49 16 3 H 0.07 0.78 6.32 -51.93 -0.33 0.45 16 4 N -0.75 -9.21 5.25 -52.12 -0.27 -9.49 16 5 C 0.14 2.18 6.64 -83.71 -0.56 1.63 16 6 C -0.14 -2.59 9.89 -39.40 -0.39 -2.98 16 7 C -0.18 -3.79 9.16 -39.42 -0.36 -4.15 16 8 C 0.12 2.71 6.65 -39.09 -0.26 2.45 16 9 O -0.23 -6.13 8.58 -0.02 0.00 -6.13 16 10 C -0.38 -11.03 9.94 30.87 0.31 -10.72 16 11 H 0.10 2.99 5.43 -52.49 -0.28 2.71 16 12 C 0.06 1.71 5.49 -17.52 -0.10 1.61 16 13 N -0.89 -26.20 13.96 55.48 0.77 -25.43 16 14 Si 0.91 22.14 28.62 -169.99 -4.86 17.28 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 18 C -0.15 -2.97 9.98 -39.42 -0.39 -3.36 16 19 C -0.15 -2.55 8.84 -39.40 -0.35 -2.90 16 20 C -0.12 -1.01 3.46 -89.69 -0.31 -1.32 16 21 C 0.01 0.11 8.48 -2.63 -0.02 0.08 16 22 N -0.64 -5.43 8.53 -116.82 -1.00 -6.42 16 23 C 0.01 0.10 7.60 -2.76 -0.02 0.08 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 26 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 27 H 0.39 4.31 8.61 -40.82 -0.35 3.96 16 28 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.13 3.03 5.63 -52.49 -0.30 2.74 16 30 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.11 1.58 6.11 -52.49 -0.32 1.26 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.61 7.99 -51.93 -0.41 0.20 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.32 2.26 8.92 -39.29 -0.35 1.91 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -30.25 313.06 -8.12 -38.37 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.23 Total: 6.45 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.25 Total: -19.36 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.50 Total: -41.34 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: 0.00 Total: -6.13 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.86 Total: 17.28 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.25 -8.12 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686223827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.036 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds