Wall clock time and date at job start Mon Mar 30 2020 04:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46820 * 2 1 4 4 N 1.46505 * 109.47115 * 119.99401 * 2 1 3 5 5 C 1.39775 * 120.00126 * 274.99991 * 4 2 1 6 6 C 1.38954 * 120.00780 * 179.97438 * 5 4 2 7 7 C 1.38002 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.38905 * 120.00778 * 0.26007 * 7 6 5 9 9 O 1.35795 * 119.99487 * 179.71935 * 8 7 6 10 10 C 1.34806 * 117.00105 * 354.45908 * 9 8 7 11 11 H 1.07995 * 120.00087 * 5.05500 * 10 9 8 12 12 C 1.38623 * 119.99845 * 185.05398 * 10 9 8 13 13 N 1.31578 * 120.00000 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00275 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47127 * 89.99314 * 14 12 10 16 16 H 1.48494 * 109.47053 * 210.00293 * 14 12 10 17 17 H 1.48503 * 109.46852 * 329.99606 * 14 12 10 18 18 C 1.38904 * 120.00733 * 359.48757 * 8 7 6 19 19 C 1.38010 * 120.00499 * 0.51239 * 18 8 7 20 20 C 1.52993 * 109.47156 * 239.99686 * 2 1 3 21 21 C 1.53939 * 113.73787 * 158.76591 * 20 2 1 22 22 N 1.48182 * 86.10273 * 221.95631 * 21 20 2 23 23 C 1.47965 * 90.80232 * 24.59797 * 22 21 20 24 24 H 1.08999 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47203 * 300.00525 * 1 2 3 26 26 H 1.09001 * 109.47421 * 60.00231 * 1 2 3 27 27 H 0.97001 * 119.99403 * 94.99653 * 4 2 1 28 28 H 1.07997 * 119.99624 * 359.96486 * 6 5 4 29 29 H 1.08000 * 120.00051 * 179.97438 * 7 6 5 30 30 H 0.97002 * 120.00447 * 180.02562 * 13 12 10 31 31 H 1.07996 * 119.99809 * 180.25252 * 18 8 7 32 32 H 1.08001 * 120.00161 * 179.72091 * 19 18 8 33 33 H 1.09001 * 112.93965 * 290.33514 * 20 2 1 34 34 H 1.09000 * 113.75531 * 336.24122 * 21 20 2 35 35 H 1.09002 * 113.75912 * 107.59952 * 21 20 2 36 36 H 1.00909 * 111.06995 * 137.51575 * 22 21 20 37 37 H 1.08998 * 113.76175 * 221.08576 * 23 22 21 38 38 H 1.09002 * 113.75679 * 89.71556 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1518 0.0069 2.4002 6 6 2.6145 -0.6480 3.5351 7 6 2.7467 0.0409 4.7235 8 6 2.4123 1.3875 4.7868 9 8 2.5371 2.0638 5.9578 10 6 2.8802 1.3455 7.0457 11 1 3.1221 0.2976 6.9467 12 6 2.9226 1.9520 8.2915 13 7 3.2581 1.2511 9.3534 14 14 2.5036 3.7643 8.4629 15 1 1.0479 3.9141 8.7148 16 1 3.2649 4.3430 9.5989 17 1 2.8652 4.4764 7.2109 18 6 1.9547 2.0438 3.6513 19 6 1.8223 1.3553 2.4625 20 6 2.0400 -0.7213 -1.2491 21 6 3.4849 -0.3525 -1.6311 22 7 2.9994 -0.3205 -3.0308 23 6 1.6207 -0.0476 -2.5683 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 2.2490 -1.6317 1.1527 28 1 2.8704 -1.6961 3.4870 29 1 3.1059 -0.4682 5.6057 30 1 3.2874 1.6753 10.2252 31 1 1.6986 3.0918 3.6996 32 1 1.4623 1.8645 1.5807 33 1 1.8527 -1.7948 -1.2260 34 1 3.8042 0.6193 -1.2547 35 1 4.2072 -1.1446 -1.4336 36 1 3.3775 0.4720 -3.5279 37 1 0.8562 -0.5965 -3.1181 38 1 1.3936 1.0136 -2.4665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686223827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:20 Heat of formation + Delta-G solvation = 13.743504 kcal Electronic energy + Delta-G solvation = -19066.533791 eV Core-core repulsion = 16102.767693 eV Total energy + Delta-G solvation = -2963.766097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02820 -40.45926 -38.73742 -36.10821 -34.33391 -32.30267 -31.53316 -28.84167 -27.88048 -26.93996 -26.58912 -24.03516 -23.14283 -21.87109 -20.56894 -19.62868 -19.07661 -18.06782 -17.32429 -16.76765 -16.42433 -15.76635 -15.56320 -15.46070 -15.20078 -14.86070 -14.38136 -14.19517 -14.15574 -13.83611 -13.72499 -13.44032 -13.23293 -13.04106 -12.69962 -12.63134 -12.34672 -11.96608 -11.80546 -11.63950 -11.57196 -11.18780 -10.96819 -10.29763 -9.85605 -9.78943 -8.43055 -7.95735 -6.10700 0.57192 0.90027 1.33543 1.38401 1.55019 2.33169 2.57862 2.85365 3.15740 3.17648 3.31486 3.54463 3.75239 4.10993 4.14432 4.28068 4.39569 4.43574 4.45934 4.57412 4.60339 4.64418 4.85374 4.87475 4.90458 4.92373 5.03401 5.13716 5.19927 5.25090 5.31554 5.45157 5.50474 5.63904 5.84887 5.87634 6.15769 6.31041 6.63957 6.92790 7.03131 7.73588 8.69469 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045270 B = 0.003647 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.368673 B = 7675.054288 C = 7844.462017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.162 3.838 3 H 0.074 0.926 4 N -0.739 5.739 5 C 0.166 3.834 6 C -0.153 4.153 7 C -0.187 4.187 8 C 0.064 3.936 9 O -0.255 6.255 10 C -0.391 4.391 11 H 0.077 0.923 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.972 3.028 15 H -0.267 1.267 16 H -0.270 1.270 17 H -0.263 1.263 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.113 4.113 21 C 0.010 3.990 22 N -0.653 5.653 23 C 0.019 3.981 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.401 0.599 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.282 0.718 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.326 0.674 37 H 0.095 0.905 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.392 -1.431 -24.294 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.056 3.944 3 H 0.092 0.908 4 N -0.372 5.372 5 C 0.065 3.935 6 C -0.175 4.175 7 C -0.207 4.207 8 C 0.016 3.984 9 O -0.164 6.164 10 C -0.468 4.468 11 H 0.094 0.906 12 C -0.193 4.193 13 N -0.574 5.574 14 Si 0.795 3.205 15 H -0.192 1.192 16 H -0.194 1.194 17 H -0.187 1.187 18 C -0.162 4.162 19 C -0.171 4.171 20 C -0.132 4.132 21 C -0.121 4.121 22 N -0.278 5.278 23 C -0.111 4.111 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.236 0.764 28 H 0.150 0.850 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.165 0.835 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.428 -1.883 -24.490 24.958 hybrid contribution 0.245 0.760 1.282 1.510 sum -4.183 -1.123 -23.208 23.609 Atomic orbital electron populations 1.22252 0.95466 1.02470 1.02252 1.20932 0.93847 0.96242 0.83350 0.90760 1.44440 1.74781 1.12058 1.05908 1.17531 0.97776 0.91549 0.86692 1.20459 1.05814 1.00028 0.91224 1.21064 1.06065 0.94608 0.98938 1.19465 0.99983 0.91922 0.87037 1.83496 1.81506 1.36600 1.14790 1.20673 1.46151 0.95263 0.84701 0.90551 1.25260 0.96478 1.04379 0.93204 1.69751 1.49368 1.38747 0.99574 0.85192 0.78847 0.78263 0.78239 1.19207 1.19448 1.18719 1.20294 1.04604 1.00457 0.90803 1.20505 1.06350 0.92955 0.97252 1.23181 0.95554 1.01232 0.93238 1.23759 0.97255 1.01510 0.89538 1.66915 1.04591 1.43731 1.12561 1.23728 0.92991 1.00537 0.93865 0.92402 0.93555 0.90167 0.76392 0.84992 0.87629 0.90858 0.85450 0.83504 0.88137 0.91275 0.90092 0.86103 0.88691 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.25 71.98 0.67 -1.83 16 2 C 0.16 2.57 2.07 44.99 0.09 2.66 16 3 H 0.07 1.23 6.32 -2.39 -0.02 1.22 16 4 N -0.74 -15.41 5.25 -318.80 -1.67 -17.09 16 5 C 0.17 4.91 6.64 38.22 0.25 5.16 16 6 C -0.15 -5.34 9.89 22.39 0.22 -5.12 16 7 C -0.19 -8.40 9.16 22.37 0.20 -8.19 16 8 C 0.06 3.08 6.65 22.59 0.15 3.23 16 9 O -0.25 -14.25 8.58 -23.00 -0.20 -14.45 16 10 C -0.39 -23.73 9.94 67.91 0.68 -23.05 16 11 H 0.08 4.86 5.43 -2.91 -0.02 4.84 16 12 C 0.00 0.21 5.49 84.82 0.47 0.68 16 13 N -0.93 -57.27 13.96 21.61 0.30 -56.97 16 14 Si 0.97 46.75 28.62 68.60 1.96 48.71 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 18 C -0.14 -5.48 9.98 22.38 0.22 -5.25 16 19 C -0.15 -4.55 8.84 22.39 0.20 -4.35 16 20 C -0.11 -1.48 3.46 -10.15 -0.04 -1.51 16 21 C 0.01 0.14 8.48 86.37 0.73 0.87 16 22 N -0.65 -9.05 8.53 -523.52 -4.47 -13.51 16 23 C 0.02 0.21 7.60 86.41 0.66 0.87 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.88 7.71 -2.39 -0.02 0.86 16 26 H 0.08 0.87 7.52 -2.39 -0.02 0.86 16 27 H 0.40 7.34 8.61 -92.71 -0.80 6.54 16 28 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.11 5.24 5.63 -2.91 -0.02 5.23 16 30 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.15 3.49 6.11 -2.91 -0.02 3.47 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.01 7.99 -2.39 -0.02 0.99 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.33 3.69 8.92 -89.69 -0.80 2.89 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.70 8.10 -2.39 -0.02 0.69 16 Total: -1.00 -68.51 313.06 -0.08 -68.59 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.51 Total: 20.56 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 4.51 Total: -35.84 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -5.84 Total: -87.57 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.20 Total: -14.45 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.96 Total: 48.71 kcal Total: -68.51 -0.08 -68.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686223827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.332 kcal (2) G-P(sol) polarization free energy of solvation -68.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds