Wall clock time and date at job start Mon Mar 30 2020 04:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46429 * 2 1 4 4 N 1.46898 * 109.47068 * 239.99714 * 2 1 3 5 5 N 1.45400 * 110.99855 * 108.12510 * 4 2 1 6 6 C 1.47482 * 111.00291 * 139.62248 * 5 4 2 7 7 C 1.53509 * 87.93197 * 138.70205 * 6 5 4 8 8 C 1.47483 * 110.99881 * 235.59209 * 5 4 2 9 9 C 1.50701 * 109.46847 * 119.99206 * 2 1 3 10 10 C 1.38304 * 119.93270 * 254.86168 * 9 2 1 11 11 C 1.38094 * 120.06793 * 180.02562 * 10 9 2 12 12 C 1.38879 * 119.93120 * 0.27534 * 11 10 9 13 13 O 1.35753 * 120.06621 * 179.72581 * 12 11 10 14 14 C 1.34828 * 117.00344 * 6.09829 * 13 12 11 15 15 H 1.07995 * 119.99838 * 5.64846 * 14 13 12 16 16 C 1.38659 * 120.00066 * 185.65285 * 14 13 12 17 17 N 1.31553 * 119.99930 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99918 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46698 * 90.00454 * 18 16 14 20 20 H 1.48498 * 109.47331 * 210.00231 * 18 16 14 21 21 H 1.48500 * 109.47241 * 330.00556 * 18 16 14 22 22 C 1.38875 * 119.86128 * 359.46829 * 12 11 10 23 23 C 1.38097 * 119.93063 * 0.53403 * 22 12 11 24 24 H 1.09003 * 109.47312 * 64.99467 * 1 2 3 25 25 H 1.09003 * 109.47070 * 184.98565 * 1 2 3 26 26 H 1.09000 * 109.47852 * 304.98990 * 1 2 3 27 27 H 1.00894 * 111.00350 * 344.16888 * 4 2 1 28 28 H 1.09001 * 113.47674 * 253.47306 * 6 5 4 29 29 H 1.09004 * 113.47054 * 23.93324 * 6 5 4 30 30 H 1.09000 * 114.16887 * 220.33112 * 7 6 5 31 31 H 1.08994 * 114.34815 * 87.63658 * 7 6 5 32 32 H 1.08999 * 113.47500 * 336.06628 * 8 5 4 33 33 H 1.09003 * 113.47282 * 106.52879 * 8 5 4 34 34 H 1.07998 * 119.96208 * 359.97438 * 10 9 2 35 35 H 1.07997 * 120.03615 * 180.02562 * 11 10 9 36 36 H 0.96997 * 120.00371 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.03556 * 180.25038 * 22 12 11 38 38 H 1.07999 * 119.96551 * 179.73800 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 7 2.5915 0.2494 -2.1480 6 6 3.8147 -0.2976 -2.7640 7 6 3.3314 0.2782 -4.1025 8 6 1.9418 0.1315 -3.4668 9 6 2.0323 -0.7103 1.2306 10 6 2.5574 0.0187 2.2821 11 6 3.0189 -0.6293 3.4108 12 6 2.9607 -2.0148 3.4871 13 8 3.4187 -2.6550 4.5931 14 6 3.8005 -1.8851 5.6320 15 1 3.6496 -0.8163 5.5962 16 6 4.3869 -2.4655 6.7464 17 7 4.7599 -1.7142 7.7598 18 14 4.6474 -4.3142 6.8085 19 1 5.9798 -4.6456 6.2428 20 1 4.5792 -4.7766 8.2181 21 1 3.5903 -4.9900 6.0142 22 6 2.4279 -2.7435 2.4317 23 6 1.9680 -2.0897 1.3057 24 1 -0.3634 0.4344 -0.9314 25 1 -0.3633 -1.0238 0.0893 26 1 -0.3635 0.5893 0.8419 27 1 1.2859 -1.2366 -1.6277 28 1 4.7304 0.1661 -2.3971 29 1 3.8581 -1.3867 -2.7501 30 1 3.5022 -0.3760 -4.9574 31 1 3.6330 1.3099 -4.2829 32 1 1.4854 -0.8430 -3.6404 33 1 1.2702 0.9590 -3.6954 34 1 2.6073 1.0957 2.2200 35 1 3.4285 -0.0596 4.2318 36 1 5.1698 -2.1202 8.5396 37 1 2.3775 -3.8208 2.4897 38 1 1.5575 -2.6562 0.4829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686777800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:41 Heat of formation + Delta-G solvation = 63.735810 kcal Electronic energy + Delta-G solvation = -19103.374571 eV Core-core repulsion = 16141.776303 eV Total energy + Delta-G solvation = -2961.598268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86798 -39.10335 -37.16072 -34.66795 -32.31630 -30.38265 -30.07052 -28.08323 -26.05887 -25.58663 -25.22082 -22.44735 -21.94735 -20.20544 -19.81808 -17.81381 -17.20025 -16.96161 -16.04616 -15.06001 -14.92607 -14.60080 -14.10609 -13.83002 -13.72047 -13.49545 -13.16649 -12.77956 -12.65162 -12.46167 -12.20747 -12.18140 -12.09346 -11.59596 -11.30555 -11.07216 -10.93414 -10.63742 -10.57922 -10.54068 -10.09730 -9.58527 -9.34600 -8.81446 -8.48216 -8.15255 -7.22054 -6.37177 -4.03313 2.22527 2.29700 3.24779 3.28658 3.43354 3.45638 4.22306 4.27394 4.27710 4.55877 4.76653 4.95212 5.09871 5.14816 5.19567 5.25952 5.29772 5.40488 5.46564 5.52493 5.67577 5.72432 5.76287 5.85710 5.90458 5.97678 6.05830 6.13258 6.23459 6.45486 6.65294 6.82195 6.94440 7.17452 7.35190 7.40629 7.55435 7.68966 7.85880 8.09696 8.98672 9.62705 10.70839 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036129 B = 0.003850 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.814084 B = 7270.895224 C = 7423.936790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.145 3.855 3 H 0.083 0.917 4 N -0.544 5.544 5 N -0.307 5.307 6 C 0.011 3.989 7 C -0.150 4.150 8 C -0.033 4.033 9 C -0.155 4.155 10 C -0.068 4.068 11 C -0.220 4.220 12 C 0.158 3.842 13 O -0.220 6.220 14 C -0.388 4.388 15 H 0.105 0.895 16 C 0.062 3.938 17 N -0.882 5.882 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.195 4.195 23 C -0.053 4.053 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.328 0.672 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.279 0.721 37 H 0.114 0.886 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 2.479 -20.453 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 H 0.101 0.899 4 N -0.267 5.267 5 N -0.120 5.120 6 C -0.119 4.119 7 C -0.189 4.189 8 C -0.163 4.163 9 C -0.157 4.157 10 C -0.086 4.086 11 C -0.239 4.239 12 C 0.107 3.893 13 O -0.126 6.126 14 C -0.463 4.463 15 H 0.123 0.877 16 C -0.141 4.141 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.215 4.215 23 C -0.072 4.072 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.148 0.852 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.368 2.711 -19.483 20.390 hybrid contribution -0.669 -1.018 -0.448 1.298 sum -6.037 1.693 -19.931 20.894 Atomic orbital electron populations 1.22416 0.96450 1.02326 1.01535 1.20180 0.91983 0.97260 0.86983 0.89852 1.64170 1.38204 1.19947 1.04392 1.72143 1.03564 1.33126 1.03173 1.23809 0.95712 1.00121 0.92220 1.23088 0.96052 1.02442 0.97340 1.24327 0.98005 1.01774 0.92210 1.19150 1.07613 0.93609 0.95293 1.20625 0.96715 0.98430 0.92874 1.21229 1.08066 0.94391 1.00244 1.19138 0.92345 0.90982 0.86877 1.83585 1.72096 1.36076 1.20817 1.20758 1.40088 0.92987 0.92492 0.87741 1.24463 0.95260 1.00099 0.94245 1.69647 1.39772 1.36133 1.06482 0.86182 0.79618 0.83790 0.77313 1.19947 1.20843 1.18373 1.20197 1.07760 0.99241 0.94283 1.20313 0.97849 0.93466 0.95582 0.93421 0.92255 0.91578 0.85243 0.89687 0.90110 0.90472 0.88980 0.90696 0.89883 0.87487 0.85077 0.91135 0.86798 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.01 37.16 0.33 -1.61 16 2 C 0.15 1.99 3.23 -68.86 -0.22 1.77 16 3 H 0.08 1.21 7.66 -51.93 -0.40 0.82 16 4 N -0.54 -6.78 6.06 -5.65 -0.03 -6.81 16 5 N -0.31 -3.55 6.46 -122.69 -0.79 -4.34 16 6 C 0.01 0.11 8.00 -7.55 -0.06 0.05 16 7 C -0.15 -1.15 8.47 -26.20 -0.22 -1.37 16 8 C -0.03 -0.28 7.81 -7.55 -0.06 -0.34 16 9 C -0.15 -2.62 4.95 -104.58 -0.52 -3.14 16 10 C -0.07 -1.27 9.66 -39.61 -0.38 -1.65 16 11 C -0.22 -4.88 9.13 -39.40 -0.36 -5.24 16 12 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 13 O -0.22 -5.95 8.59 0.05 0.00 -5.95 16 14 C -0.39 -11.13 9.90 30.89 0.31 -10.83 16 15 H 0.11 3.07 5.54 -52.49 -0.29 2.78 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.86 13.96 55.48 0.77 -25.09 16 18 Si 0.91 22.04 28.62 -169.99 -4.86 17.18 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.26 -6.34 7.11 56.52 0.40 -5.93 16 22 C -0.20 -3.98 9.99 -39.40 -0.39 -4.38 16 23 C -0.05 -0.93 9.16 -39.61 -0.36 -1.30 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.67 7.99 -51.93 -0.42 0.25 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.33 3.51 7.22 -174.66 -1.26 2.25 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.56 7.57 -51.93 -0.39 0.17 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.77 8.00 -52.49 -0.42 1.35 16 35 H 0.13 3.06 5.72 -52.49 -0.30 2.76 16 36 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.11 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.11 1.62 7.87 -52.49 -0.41 1.21 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -30.17 317.36 -8.84 -39.01 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.41 Total: 4.09 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -2.30 Total: -22.86 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.05 Total: -36.24 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: 0.00 Total: -5.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.17 -8.84 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.745 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds