Wall clock time and date at job start Mon Mar 30 2020 04:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46429 * 2 1 4 4 N 1.46898 * 109.47068 * 239.99714 * 2 1 3 5 5 N 1.45400 * 110.99855 * 108.12510 * 4 2 1 6 6 C 1.47482 * 111.00291 * 139.62248 * 5 4 2 7 7 C 1.53509 * 87.93197 * 138.70205 * 6 5 4 8 8 C 1.47483 * 110.99881 * 235.59209 * 5 4 2 9 9 C 1.50701 * 109.46847 * 119.99206 * 2 1 3 10 10 C 1.38304 * 119.93270 * 254.86168 * 9 2 1 11 11 C 1.38094 * 120.06793 * 180.02562 * 10 9 2 12 12 C 1.38879 * 119.93120 * 0.27534 * 11 10 9 13 13 O 1.35753 * 120.06621 * 179.72581 * 12 11 10 14 14 C 1.34828 * 117.00344 * 6.09829 * 13 12 11 15 15 H 1.07995 * 119.99838 * 5.64846 * 14 13 12 16 16 C 1.38659 * 120.00066 * 185.65285 * 14 13 12 17 17 N 1.31553 * 119.99930 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99918 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46698 * 90.00454 * 18 16 14 20 20 H 1.48498 * 109.47331 * 210.00231 * 18 16 14 21 21 H 1.48500 * 109.47241 * 330.00556 * 18 16 14 22 22 C 1.38875 * 119.86128 * 359.46829 * 12 11 10 23 23 C 1.38097 * 119.93063 * 0.53403 * 22 12 11 24 24 H 1.09003 * 109.47312 * 64.99467 * 1 2 3 25 25 H 1.09003 * 109.47070 * 184.98565 * 1 2 3 26 26 H 1.09000 * 109.47852 * 304.98990 * 1 2 3 27 27 H 1.00894 * 111.00350 * 344.16888 * 4 2 1 28 28 H 1.09001 * 113.47674 * 253.47306 * 6 5 4 29 29 H 1.09004 * 113.47054 * 23.93324 * 6 5 4 30 30 H 1.09000 * 114.16887 * 220.33112 * 7 6 5 31 31 H 1.08994 * 114.34815 * 87.63658 * 7 6 5 32 32 H 1.08999 * 113.47500 * 336.06628 * 8 5 4 33 33 H 1.09003 * 113.47282 * 106.52879 * 8 5 4 34 34 H 1.07998 * 119.96208 * 359.97438 * 10 9 2 35 35 H 1.07997 * 120.03615 * 180.02562 * 11 10 9 36 36 H 0.96997 * 120.00371 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.03556 * 180.25038 * 22 12 11 38 38 H 1.07999 * 119.96551 * 179.73800 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 7 2.5915 0.2494 -2.1480 6 6 3.8147 -0.2976 -2.7640 7 6 3.3314 0.2782 -4.1025 8 6 1.9418 0.1315 -3.4668 9 6 2.0323 -0.7103 1.2306 10 6 2.5574 0.0187 2.2821 11 6 3.0189 -0.6293 3.4108 12 6 2.9607 -2.0148 3.4871 13 8 3.4187 -2.6550 4.5931 14 6 3.8005 -1.8851 5.6320 15 1 3.6496 -0.8163 5.5962 16 6 4.3869 -2.4655 6.7464 17 7 4.7599 -1.7142 7.7598 18 14 4.6474 -4.3142 6.8085 19 1 5.9798 -4.6456 6.2428 20 1 4.5792 -4.7766 8.2181 21 1 3.5903 -4.9900 6.0142 22 6 2.4279 -2.7435 2.4317 23 6 1.9680 -2.0897 1.3057 24 1 -0.3634 0.4344 -0.9314 25 1 -0.3633 -1.0238 0.0893 26 1 -0.3635 0.5893 0.8419 27 1 1.2859 -1.2366 -1.6277 28 1 4.7304 0.1661 -2.3971 29 1 3.8581 -1.3867 -2.7501 30 1 3.5022 -0.3760 -4.9574 31 1 3.6330 1.3099 -4.2829 32 1 1.4854 -0.8430 -3.6404 33 1 1.2702 0.9590 -3.6954 34 1 2.6073 1.0957 2.2200 35 1 3.4285 -0.0596 4.2318 36 1 5.1698 -2.1202 8.5396 37 1 2.3775 -3.8208 2.4897 38 1 1.5575 -2.6562 0.4829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686777800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:41 Heat of formation + Delta-G solvation = 44.191943 kcal Electronic energy + Delta-G solvation = -19104.222057 eV Core-core repulsion = 16141.776303 eV Total energy + Delta-G solvation = -2962.445754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98070 -40.49690 -38.75085 -35.93065 -34.40387 -31.85873 -31.32299 -29.46642 -27.26339 -26.75427 -26.36338 -23.89864 -23.52421 -21.42703 -20.77686 -19.73342 -19.06497 -17.85786 -16.99713 -16.56183 -16.32819 -15.73662 -15.71823 -15.48203 -15.33548 -14.76415 -14.38655 -14.22260 -14.08599 -13.83952 -13.63235 -13.36585 -13.06241 -12.77625 -12.71051 -12.48895 -12.23595 -12.08187 -11.94962 -11.70130 -11.56770 -11.26992 -10.88512 -10.41927 -9.76469 -9.40309 -8.93816 -8.49537 -6.21762 0.60655 0.68542 1.31148 1.35811 1.52339 2.28766 2.53832 2.80372 3.13799 3.14406 3.57200 3.57371 4.02537 4.07816 4.12489 4.18070 4.33057 4.43036 4.47852 4.61490 4.64740 4.70084 4.73519 4.84409 4.91729 4.97508 5.00386 5.07435 5.17391 5.22266 5.26079 5.32143 5.43963 5.60527 5.77995 5.83392 5.93155 6.04604 6.28365 6.69965 6.85036 7.60685 8.62487 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036129 B = 0.003850 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.814084 B = 7270.895224 C = 7423.936790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.076 0.924 4 N -0.553 5.553 5 N -0.328 5.328 6 C 0.002 3.998 7 C -0.136 4.136 8 C -0.029 4.029 9 C -0.130 4.130 10 C -0.073 4.073 11 C -0.236 4.236 12 C 0.117 3.883 13 O -0.247 6.247 14 C -0.398 4.398 15 H 0.078 0.922 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.972 3.028 19 H -0.267 1.267 20 H -0.266 1.266 21 H -0.262 1.262 22 C -0.193 4.193 23 C -0.045 4.045 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.341 0.659 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.285 0.715 37 H 0.127 0.873 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 1.607 -23.926 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.094 0.906 4 N -0.277 5.277 5 N -0.142 5.142 6 C -0.127 4.127 7 C -0.174 4.174 8 C -0.159 4.159 9 C -0.132 4.132 10 C -0.092 4.092 11 C -0.255 4.255 12 C 0.068 3.932 13 O -0.155 6.155 14 C -0.475 4.475 15 H 0.095 0.905 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.794 3.206 19 H -0.192 1.192 20 H -0.191 1.191 21 H -0.186 1.186 22 C -0.212 4.212 23 C -0.063 4.063 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.162 0.838 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.145 0.855 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.755 1.855 -23.004 24.046 hybrid contribution -0.354 -0.575 0.295 0.737 sum -7.109 1.280 -22.709 23.830 Atomic orbital electron populations 1.22336 0.94245 1.02934 1.02530 1.20057 0.93478 0.96282 0.86144 0.90559 1.63973 1.38642 1.20424 1.04667 1.72132 1.04482 1.33061 1.04499 1.23876 0.94978 1.00041 0.93844 1.23043 0.94980 1.02837 0.96582 1.24389 0.98442 1.02819 0.90237 1.19668 1.04031 0.93758 0.95738 1.20885 0.96363 0.99744 0.92199 1.21214 1.09146 0.94199 1.00937 1.19661 0.94226 0.91957 0.87361 1.83520 1.74453 1.36006 1.21478 1.20686 1.40633 0.92247 0.93913 0.90483 1.25299 0.95056 1.04869 0.93723 1.69731 1.41455 1.38094 1.07334 0.85198 0.79463 0.77923 0.77997 1.19179 1.19061 1.18622 1.20523 1.06720 1.00045 0.93930 1.20711 0.96443 0.93819 0.95338 0.91354 0.91570 0.92029 0.83830 0.90970 0.90265 0.88542 0.88686 0.89324 0.89163 0.85380 0.87698 0.90587 0.85510 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.01 71.98 0.65 -2.45 16 2 C 0.15 3.63 3.23 44.17 0.14 3.77 16 3 H 0.08 2.01 7.66 -2.39 -0.02 1.99 16 4 N -0.55 -11.80 6.06 -171.80 -1.04 -12.84 16 5 N -0.33 -6.59 6.46 -542.08 -3.50 -10.10 16 6 C 0.00 0.04 8.00 83.57 0.67 0.71 16 7 C -0.14 -1.62 8.47 30.94 0.26 -1.36 16 8 C -0.03 -0.38 7.81 83.57 0.65 0.27 16 9 C -0.13 -4.11 4.95 -19.83 -0.10 -4.21 16 10 C -0.07 -2.72 9.66 22.25 0.21 -2.50 16 11 C -0.24 -10.90 9.13 22.39 0.20 -10.70 16 12 C 0.12 5.68 6.65 22.58 0.15 5.83 16 13 O -0.25 -13.87 8.59 -22.75 -0.20 -14.06 16 14 C -0.40 -24.22 9.90 67.92 0.67 -23.55 16 15 H 0.08 4.93 5.54 -2.91 -0.02 4.92 16 16 C 0.01 0.51 5.49 84.84 0.47 0.97 16 17 N -0.93 -56.49 13.96 21.61 0.30 -56.19 16 18 Si 0.97 46.47 28.62 68.60 1.96 48.43 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.19 -7.66 9.99 22.39 0.22 -7.44 16 23 C -0.04 -1.44 9.16 22.25 0.20 -1.23 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.20 7.99 -2.39 -0.02 1.18 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.34 5.76 7.22 -204.86 -1.48 4.28 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 0.94 7.57 -2.39 -0.02 0.92 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.13 4.14 8.00 -2.91 -0.02 4.11 16 35 H 0.11 5.34 5.72 -2.91 -0.02 5.33 16 36 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 37 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.15 3.65 7.87 -2.91 -0.02 3.63 16 Total: -1.00 -68.42 317.36 1.51 -66.91 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -0.42 Total: 19.74 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 4.41 Total: -41.89 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -4.24 Total: -79.12 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.20 Total: -14.06 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.96 Total: 48.43 kcal Total: -68.42 1.51 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.097 kcal (2) G-P(sol) polarization free energy of solvation -68.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds