Wall clock time and date at job start Mon Mar 30 2020 04:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99632 * 2 1 4 4 C 1.53001 * 115.55343 * 34.41738 * 3 2 1 5 5 C 1.53001 * 117.49942 * 248.74679 * 3 2 1 6 6 C 1.53002 * 117.49885 * 180.08582 * 3 2 1 7 7 H 1.08998 * 117.49779 * 359.97370 * 6 3 2 8 8 N 1.46498 * 117.50005 * 214.98034 * 6 3 2 9 9 C 1.39853 * 120.00062 * 155.00137 * 8 6 3 10 10 C 1.39604 * 119.83978 * 359.97438 * 9 8 6 11 11 C 1.38053 * 120.54852 * 179.97438 * 10 9 8 12 12 C 1.38728 * 120.22234 * 0.02562 * 11 10 9 13 13 N 1.38869 * 120.16495 * 179.97438 * 12 11 10 14 14 C 1.41568 * 119.67392 * 359.97438 * 12 11 10 15 15 C 1.41030 * 120.26697 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00047 * 25.84539 * 15 14 12 17 17 C 1.39878 * 119.99962 * 205.84432 * 15 14 12 18 18 N 1.30904 * 120.00260 * 17.10675 * 17 15 14 19 19 Si 1.86800 * 120.00287 * 197.10500 * 17 15 14 20 20 H 1.48502 * 109.47014 * 94.49966 * 19 17 15 21 21 H 1.48498 * 109.47275 * 214.50310 * 19 17 15 22 22 H 1.48505 * 109.47050 * 334.50463 * 19 17 15 23 23 C 1.38002 * 119.83858 * 179.72233 * 9 8 6 24 24 H 1.09002 * 109.47475 * 299.99985 * 1 2 3 25 25 H 1.08992 * 109.47221 * 60.00361 * 1 2 3 26 26 H 1.09005 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47260 * 85.58178 * 4 3 2 28 28 H 1.08999 * 109.47261 * 205.58685 * 4 3 2 29 29 H 1.09007 * 109.46579 * 325.58188 * 4 3 2 30 30 H 1.09002 * 117.49614 * 359.97438 * 5 3 2 31 31 H 1.08997 * 117.50236 * 145.01779 * 5 3 2 32 32 H 0.96999 * 119.99745 * 334.99858 * 8 6 3 33 33 H 1.08005 * 119.72198 * 359.97438 * 10 9 8 34 34 H 1.08002 * 119.88522 * 179.97438 * 11 10 9 35 35 H 0.97002 * 120.00043 * 359.97438 * 13 12 11 36 36 H 0.96994 * 120.00107 * 179.97438 * 13 12 11 37 37 H 0.97003 * 120.00432 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.11764 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.2382 2.3715 0.7802 5 6 2.7469 1.7508 -1.2648 6 6 3.5373 1.3990 -0.0020 7 1 4.0987 0.4647 -0.0029 8 7 4.1485 2.5025 0.7428 9 6 5.4555 2.3813 1.2253 10 6 6.1746 1.2070 0.9957 11 6 7.4659 1.0718 1.4650 12 6 8.0636 2.1049 2.1721 13 7 9.3624 1.9674 2.6440 14 6 7.3431 3.2999 2.4102 15 6 7.9387 4.3583 3.1272 16 1 9.0134 4.4652 3.1388 17 6 7.1377 5.2696 3.8232 18 7 5.8925 4.9717 4.0956 19 14 7.8449 6.9118 4.3641 20 1 7.5346 7.9447 3.3432 21 1 7.2450 7.3050 5.6644 22 1 9.3174 6.7912 4.5146 23 6 6.0300 3.4252 1.9215 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.5292 2.3354 1.8300 28 1 1.4671 3.3565 0.3734 29 1 0.1683 2.1820 0.6929 30 1 2.7886 1.0478 -2.0968 31 1 2.6819 2.8032 -1.5410 32 1 3.6466 3.3173 0.9012 33 1 5.7168 0.3975 0.4465 34 1 8.0122 0.1584 1.2816 35 1 9.8539 1.1474 2.4797 36 1 9.7782 2.6914 3.1378 37 1 5.3371 5.6035 4.5786 38 1 5.4720 4.3336 2.0941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694391820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:47 Heat of formation + Delta-G solvation = 13.776965 kcal Electronic energy + Delta-G solvation = -19385.170093 eV Core-core repulsion = 16421.405447 eV Total energy + Delta-G solvation = -2963.764647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.17498 -37.77189 -35.83465 -33.62664 -33.42297 -30.67096 -29.45233 -28.68399 -26.65069 -26.02532 -24.78227 -22.05530 -20.91451 -20.16774 -19.31022 -17.27336 -16.71433 -16.02469 -15.54136 -15.29829 -15.05346 -14.82013 -14.50315 -14.22857 -13.31889 -12.94608 -12.58006 -12.45150 -12.23500 -12.14234 -12.07481 -11.73458 -11.46048 -11.30277 -11.21114 -11.02721 -10.94069 -10.53723 -10.31876 -9.92623 -9.54714 -9.31915 -9.06228 -8.95209 -7.71891 -7.25292 -6.63839 -5.57771 -4.07461 2.89204 3.13151 3.15834 3.29606 3.34552 3.57051 4.02456 4.11893 4.44092 4.77599 4.84693 5.07350 5.16570 5.32641 5.35739 5.41713 5.53531 5.70306 5.81316 5.83064 5.89407 5.97092 6.14705 6.19897 6.36180 6.65465 7.08192 7.12633 7.28151 7.32437 7.44302 7.68270 7.85228 7.95676 8.09014 8.43633 8.69148 8.83994 8.91146 8.97370 9.24408 9.32179 10.35769 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.005127 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.970652 B = 5459.831874 C = 6407.711487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.011 3.989 4 C -0.142 4.142 5 C -0.219 4.219 6 C 0.145 3.855 7 H 0.131 0.869 8 N -0.724 5.724 9 C 0.173 3.827 10 C -0.251 4.251 11 C -0.152 4.152 12 C 0.087 3.913 13 N -0.888 5.888 14 C 0.096 3.904 15 C -0.465 4.465 16 H 0.072 0.928 17 C 0.077 3.923 18 N -0.800 5.800 19 Si 0.902 3.098 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.265 1.265 23 C -0.197 4.197 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.390 0.610 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.374 0.626 36 H 0.389 0.611 37 H 0.275 0.725 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 -3.440 -5.529 9.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C -0.031 4.031 4 C -0.199 4.199 5 C -0.259 4.259 6 C 0.035 3.965 7 H 0.148 0.852 8 N -0.355 5.355 9 C 0.076 3.924 10 C -0.274 4.274 11 C -0.176 4.176 12 C -0.014 4.014 13 N -0.431 5.431 14 C 0.091 3.909 15 C -0.496 4.496 16 H 0.090 0.910 17 C -0.139 4.139 18 N -0.426 5.426 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.222 4.222 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.224 0.776 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.199 0.801 36 H 0.217 0.783 37 H 0.086 0.914 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.469 -3.638 -5.456 9.939 hybrid contribution 0.005 1.166 0.426 1.241 sum -7.464 -2.472 -5.029 9.334 Atomic orbital electron populations 1.22749 0.81749 1.02231 1.00033 1.87896 1.19336 1.25281 1.94448 1.22672 0.95095 0.84899 1.00447 1.21700 0.99703 0.97403 1.01122 1.24339 1.05882 1.02070 0.93620 1.21545 0.88205 0.93600 0.93194 0.85190 1.43789 1.13535 1.16028 1.62189 1.17474 0.83237 0.95105 0.96579 1.19678 0.96086 0.97709 1.13977 1.19717 0.95757 0.97204 1.04935 1.17873 0.86894 0.94716 1.01879 1.41817 1.14223 1.20055 1.66996 1.16952 0.91548 0.90200 0.92241 1.19145 0.94081 1.08955 1.27410 0.91002 1.25742 0.94635 0.99110 0.94363 1.69887 1.07548 1.34493 1.30709 0.86421 0.80164 0.82503 0.78224 1.19666 1.20606 1.18882 1.20448 0.97739 0.98242 1.05736 0.93604 0.94195 0.89890 0.90925 0.91273 0.91702 0.88370 0.88624 0.77572 0.89367 0.89608 0.80055 0.78309 0.91444 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.05 101.05 1.02 1.33 16 2 O -0.35 -5.25 10.95 -35.23 -0.39 -5.64 16 3 C 0.01 0.16 3.02 -90.62 -0.27 -0.11 16 4 C -0.14 -1.84 8.50 37.16 0.32 -1.52 16 5 C -0.22 -3.12 10.05 -26.69 -0.27 -3.38 16 6 C 0.14 2.46 6.25 -67.89 -0.42 2.04 16 7 H 0.13 2.32 5.88 -51.93 -0.31 2.02 16 8 N -0.72 -14.07 5.52 -52.13 -0.29 -14.36 16 9 C 0.17 4.05 6.64 -83.78 -0.56 3.49 16 10 C -0.25 -5.75 9.32 -39.14 -0.36 -6.11 16 11 C -0.15 -3.49 9.86 -39.47 -0.39 -3.88 16 12 C 0.09 2.12 6.79 -83.22 -0.56 1.55 16 13 N -0.89 -18.19 8.98 32.75 0.29 -17.90 16 14 C 0.10 2.53 5.57 -106.65 -0.59 1.94 16 15 C -0.46 -12.15 8.48 -37.91 -0.32 -12.47 16 16 H 0.07 1.79 6.70 -52.49 -0.35 1.44 16 17 C 0.08 1.95 5.14 -17.33 -0.09 1.86 16 18 N -0.80 -20.79 11.02 55.54 0.61 -20.18 16 19 Si 0.90 18.84 29.59 -169.99 -5.03 13.81 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.20 -5.10 8.50 -38.75 -0.33 -5.43 16 24 H 0.05 0.46 6.47 -51.93 -0.34 0.12 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.84 7.61 -51.93 -0.39 0.44 16 29 H 0.06 0.70 5.78 -51.92 -0.30 0.40 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 32 H 0.39 7.18 7.70 -40.82 -0.31 6.86 16 33 H 0.09 1.84 5.86 -52.48 -0.31 1.53 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.37 6.49 8.83 -40.82 -0.36 6.13 16 36 H 0.39 7.81 7.05 -40.82 -0.29 7.52 16 37 H 0.27 6.57 8.30 -40.82 -0.34 6.23 16 38 H 0.12 3.11 6.25 -52.49 -0.33 2.78 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -28.61 310.65 -7.91 -36.52 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -4.95 Total: 23.78 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.85 Total: -20.72 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.62 Total: -52.44 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.39 Total: -5.64 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.61 -7.91 -36.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694391820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.296 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds