Wall clock time and date at job start Mon Mar 30 2020 04:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99632 * 2 1 4 4 C 1.53001 * 115.55343 * 34.41738 * 3 2 1 5 5 C 1.53001 * 117.49942 * 248.74679 * 3 2 1 6 6 C 1.53002 * 117.49885 * 180.08582 * 3 2 1 7 7 H 1.08998 * 117.49779 * 359.97370 * 6 3 2 8 8 N 1.46498 * 117.50005 * 214.98034 * 6 3 2 9 9 C 1.39853 * 120.00062 * 155.00137 * 8 6 3 10 10 C 1.39604 * 119.83978 * 359.97438 * 9 8 6 11 11 C 1.38053 * 120.54852 * 179.97438 * 10 9 8 12 12 C 1.38728 * 120.22234 * 0.02562 * 11 10 9 13 13 N 1.38869 * 120.16495 * 179.97438 * 12 11 10 14 14 C 1.41568 * 119.67392 * 359.97438 * 12 11 10 15 15 C 1.41030 * 120.26697 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00047 * 25.84539 * 15 14 12 17 17 C 1.39878 * 119.99962 * 205.84432 * 15 14 12 18 18 N 1.30904 * 120.00260 * 17.10675 * 17 15 14 19 19 Si 1.86800 * 120.00287 * 197.10500 * 17 15 14 20 20 H 1.48502 * 109.47014 * 94.49966 * 19 17 15 21 21 H 1.48498 * 109.47275 * 214.50310 * 19 17 15 22 22 H 1.48505 * 109.47050 * 334.50463 * 19 17 15 23 23 C 1.38002 * 119.83858 * 179.72233 * 9 8 6 24 24 H 1.09002 * 109.47475 * 299.99985 * 1 2 3 25 25 H 1.08992 * 109.47221 * 60.00361 * 1 2 3 26 26 H 1.09005 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47260 * 85.58178 * 4 3 2 28 28 H 1.08999 * 109.47261 * 205.58685 * 4 3 2 29 29 H 1.09007 * 109.46579 * 325.58188 * 4 3 2 30 30 H 1.09002 * 117.49614 * 359.97438 * 5 3 2 31 31 H 1.08997 * 117.50236 * 145.01779 * 5 3 2 32 32 H 0.96999 * 119.99745 * 334.99858 * 8 6 3 33 33 H 1.08005 * 119.72198 * 359.97438 * 10 9 8 34 34 H 1.08002 * 119.88522 * 179.97438 * 11 10 9 35 35 H 0.97002 * 120.00043 * 359.97438 * 13 12 11 36 36 H 0.96994 * 120.00107 * 179.97438 * 13 12 11 37 37 H 0.97003 * 120.00432 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.11764 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.2382 2.3715 0.7802 5 6 2.7469 1.7508 -1.2648 6 6 3.5373 1.3990 -0.0020 7 1 4.0987 0.4647 -0.0029 8 7 4.1485 2.5025 0.7428 9 6 5.4555 2.3813 1.2253 10 6 6.1746 1.2070 0.9957 11 6 7.4659 1.0718 1.4650 12 6 8.0636 2.1049 2.1721 13 7 9.3624 1.9674 2.6440 14 6 7.3431 3.2999 2.4102 15 6 7.9387 4.3583 3.1272 16 1 9.0134 4.4652 3.1388 17 6 7.1377 5.2696 3.8232 18 7 5.8925 4.9717 4.0956 19 14 7.8449 6.9118 4.3641 20 1 7.5346 7.9447 3.3432 21 1 7.2450 7.3050 5.6644 22 1 9.3174 6.7912 4.5146 23 6 6.0300 3.4252 1.9215 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.5292 2.3354 1.8300 28 1 1.4671 3.3565 0.3734 29 1 0.1683 2.1820 0.6929 30 1 2.7886 1.0478 -2.0968 31 1 2.6819 2.8032 -1.5410 32 1 3.6466 3.3173 0.9012 33 1 5.7168 0.3975 0.4465 34 1 8.0122 0.1584 1.2816 35 1 9.8539 1.1474 2.4797 36 1 9.7782 2.6914 3.1378 37 1 5.3371 5.6035 4.5786 38 1 5.4720 4.3336 2.0941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694391820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:47 Heat of formation + Delta-G solvation = -4.834456 kcal Electronic energy + Delta-G solvation = -19385.977145 eV Core-core repulsion = 16421.405447 eV Total energy + Delta-G solvation = -2964.571698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44187 -39.45145 -37.18814 -35.37632 -35.06554 -32.26043 -31.32679 -29.76898 -28.05579 -27.31657 -26.59640 -23.62378 -22.51227 -21.64133 -20.78029 -18.95862 -18.24309 -17.46798 -17.25503 -16.68693 -16.54934 -16.24381 -15.90933 -15.48471 -14.64452 -14.37597 -14.22170 -13.96643 -13.87637 -13.55392 -13.38291 -13.14345 -12.98329 -12.89652 -12.69872 -12.58149 -12.19431 -12.06893 -11.78737 -11.59309 -11.13916 -11.02737 -10.92737 -10.12280 -9.31474 -9.14864 -8.50761 -7.32088 -5.99930 1.11428 1.42300 1.49785 1.53846 1.62136 2.27722 2.33837 2.83744 2.97361 3.10686 3.68009 3.77485 3.88602 3.97836 4.05444 4.40235 4.51279 4.56396 4.60719 4.68007 4.78563 4.83943 4.85899 4.89012 5.00548 5.11642 5.23501 5.33117 5.43189 5.64391 5.87855 6.04677 6.14235 6.23614 6.30016 6.56090 6.95628 7.03205 7.10688 7.20158 7.46095 7.66933 8.50893 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.005127 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.970652 B = 5459.831874 C = 6407.711487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.376 6.376 3 C 0.022 3.978 4 C -0.141 4.141 5 C -0.197 4.197 6 C 0.109 3.891 7 H 0.118 0.882 8 N -0.720 5.720 9 C 0.172 3.828 10 C -0.258 4.258 11 C -0.157 4.157 12 C 0.072 3.928 13 N -0.878 5.878 14 C 0.063 3.937 15 C -0.493 4.493 16 H 0.075 0.925 17 C 0.036 3.964 18 N -0.833 5.833 19 Si 0.974 3.026 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.222 4.222 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.393 0.607 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.391 0.609 36 H 0.390 0.610 37 H 0.280 0.720 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.080 -3.597 -6.251 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.294 6.294 3 C -0.019 4.019 4 C -0.198 4.198 5 C -0.236 4.236 6 C 0.001 3.999 7 H 0.136 0.864 8 N -0.352 5.352 9 C 0.073 3.927 10 C -0.281 4.281 11 C -0.181 4.181 12 C -0.031 4.031 13 N -0.422 5.422 14 C 0.057 3.943 15 C -0.524 4.524 16 H 0.093 0.907 17 C -0.177 4.177 18 N -0.460 5.460 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.247 4.247 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.227 0.773 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.218 0.782 36 H 0.218 0.782 37 H 0.090 0.910 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.235 -3.829 -6.199 10.995 hybrid contribution 0.138 1.073 0.589 1.231 sum -8.097 -2.756 -5.610 10.229 Atomic orbital electron populations 1.23006 0.79495 1.03885 1.01066 1.87855 1.21773 1.25238 1.94570 1.22620 0.93422 0.85461 1.00446 1.21718 1.01032 0.97301 0.99756 1.24327 1.03292 1.02974 0.93029 1.21663 0.89933 0.92630 0.95685 0.86401 1.43716 1.12329 1.16958 1.62159 1.17560 0.84766 0.94579 0.95785 1.19991 0.96271 0.98022 1.13843 1.20053 0.96014 0.97839 1.04230 1.18043 0.88170 0.94489 1.02352 1.41688 1.13131 1.20887 1.66523 1.17343 0.92379 0.91434 0.93110 1.19403 0.94467 1.10120 1.28405 0.90695 1.26550 0.94860 1.02233 0.94095 1.69965 1.08818 1.35774 1.31449 0.85318 0.79572 0.77701 0.77787 1.19394 1.19996 1.18181 1.20414 0.98136 0.98570 1.07532 0.92903 0.92728 0.88097 0.92645 0.90483 0.89242 0.87122 0.87593 0.77267 0.87489 0.87039 0.78171 0.78166 0.90998 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.05 113.37 1.14 1.54 16 2 O -0.38 -10.50 10.95 -148.98 -1.63 -12.13 16 3 C 0.02 0.63 3.02 -10.79 -0.03 0.59 16 4 C -0.14 -3.42 8.50 71.98 0.61 -2.81 16 5 C -0.20 -5.20 10.05 30.62 0.31 -4.89 16 6 C 0.11 3.65 6.25 45.02 0.28 3.93 16 7 H 0.12 4.17 5.88 -2.39 -0.01 4.16 16 8 N -0.72 -28.21 5.52 -318.85 -1.76 -29.97 16 9 C 0.17 8.19 6.64 38.13 0.25 8.45 16 10 C -0.26 -11.77 9.32 22.56 0.21 -11.56 16 11 C -0.16 -7.15 9.86 22.34 0.22 -6.93 16 12 C 0.07 3.49 6.79 38.97 0.26 3.75 16 13 N -0.88 -35.63 8.98 -50.31 -0.45 -36.08 16 14 C 0.06 3.40 5.57 -21.18 -0.12 3.28 16 15 C -0.49 -26.35 8.48 23.35 0.20 -26.15 16 16 H 0.08 3.80 6.70 -2.91 -0.02 3.78 16 17 C 0.04 1.82 5.14 85.23 0.44 2.25 16 18 N -0.83 -44.46 11.02 21.82 0.24 -44.22 16 19 Si 0.97 39.00 29.59 68.60 2.03 41.03 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 23 C -0.22 -11.87 8.50 22.81 0.19 -11.68 16 24 H 0.05 0.92 6.47 -2.39 -0.02 0.90 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.74 7.61 -2.39 -0.02 1.72 16 29 H 0.09 1.71 5.78 -2.38 -0.01 1.69 16 30 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.11 2.61 8.05 -2.39 -0.02 2.59 16 32 H 0.39 14.66 7.70 -92.71 -0.71 13.95 16 33 H 0.11 4.40 5.86 -2.91 -0.02 4.38 16 34 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.39 13.07 8.83 -92.71 -0.82 12.26 16 36 H 0.39 15.64 7.05 -92.71 -0.65 14.99 16 37 H 0.28 13.67 8.30 -92.71 -0.77 12.91 16 38 H 0.10 5.49 6.25 -2.91 -0.02 5.47 16 Total: -1.00 -62.28 310.65 1.32 -60.95 By element: Atomic # 1 Polarization: 61.71 SS G_CDS: -1.07 Total: 60.64 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 3.97 Total: -40.22 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -1.97 Total: -110.27 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.63 Total: -12.13 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -62.28 1.32 -60.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694391820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.119 kcal (2) G-P(sol) polarization free energy of solvation -62.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds