Wall clock time and date at job start Mon Mar 30 2020 04:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47371 * 285.62321 * 3 2 1 5 5 C 1.37092 * 120.00259 * 245.55074 * 4 3 2 6 6 H 1.07997 * 120.00411 * 207.76897 * 5 4 3 7 7 C 1.38960 * 119.99678 * 27.77239 * 5 4 3 8 8 N 1.31411 * 119.99965 * 20.95597 * 7 5 4 9 9 Si 1.86797 * 119.99731 * 200.94989 * 7 5 4 10 10 H 1.48501 * 109.47464 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47132 * 120.00066 * 9 7 5 12 12 H 1.48501 * 109.47005 * 240.00014 * 9 7 5 13 13 C 1.34776 * 119.99418 * 65.54848 * 4 3 2 14 14 O 1.21293 * 119.99735 * 182.57251 * 13 4 3 15 15 C 1.50697 * 120.00592 * 2.57739 * 13 4 3 16 16 N 1.46907 * 112.82080 * 34.62576 * 15 13 4 17 17 C 1.53950 * 113.58082 * 263.53705 * 15 13 4 18 18 C 1.53076 * 86.72323 * 220.68751 * 17 15 13 19 19 C 1.52909 * 121.16876 * 150.58683 * 18 17 15 20 20 C 1.53950 * 86.78249 * 100.75262 * 19 18 17 21 21 C 1.52907 * 121.06494 * 259.11932 * 18 17 15 22 22 C 1.52908 * 88.07153 * 24.83419 * 18 17 15 23 23 H 4.40646 * 5.51320 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.47312 * 45.62365 * 3 2 1 25 25 H 1.08998 * 109.47085 * 165.62093 * 3 2 1 26 26 H 0.96997 * 119.99903 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99676 * 271.68574 * 16 15 13 28 28 H 1.00895 * 110.99961 * 35.63653 * 16 15 13 29 29 H 1.08995 * 113.65857 * 335.13655 * 17 15 13 30 30 H 1.08999 * 113.66347 * 106.18729 * 17 15 13 31 31 H 1.09008 * 113.65839 * 215.22072 * 19 18 17 32 32 H 1.08996 * 113.66732 * 346.27466 * 19 18 17 33 33 H 1.09000 * 113.57495 * 270.12463 * 20 19 18 34 34 H 1.09002 * 113.64962 * 139.34499 * 20 19 18 35 35 H 1.08991 * 113.66500 * 13.63176 * 21 18 17 36 36 H 1.09001 * 113.65932 * 144.69058 * 21 18 17 37 37 H 1.08998 * 113.66131 * 220.69814 * 22 18 17 38 38 H 1.09000 * 113.74719 * 89.64555 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.3711 1.3302 5 6 3.8260 0.5401 2.0859 6 1 4.5501 0.2011 2.8119 7 6 3.5950 1.9000 1.9178 8 7 2.4736 2.3134 1.3715 9 14 4.8786 3.1404 2.4685 10 1 6.0425 2.4238 3.0490 11 1 5.3231 3.9440 1.3015 12 1 4.2902 4.0395 3.4935 13 6 2.9042 -1.6090 1.8109 14 8 3.2677 -1.9021 2.9303 15 6 2.1952 -2.6289 0.9577 16 7 2.5208 -2.5033 -0.4693 17 6 0.6845 -2.7237 1.2387 18 6 0.8440 -4.2403 1.1049 19 6 -0.0671 -5.2022 1.8683 20 6 -0.8471 -5.3707 0.5518 21 6 0.4448 -4.9653 -0.1808 22 6 2.3133 -4.0679 1.4919 23 1 -1.0499 0.0002 0.0001 24 1 3.0097 -0.7179 -0.7345 25 1 3.0089 0.9963 -0.2552 26 1 2.3123 3.2627 1.2545 27 1 1.8966 -1.8560 -0.9270 28 1 3.4834 -2.2296 -0.5979 29 1 0.4049 -2.3999 2.2412 30 1 0.0659 -2.2777 0.4600 31 1 0.4354 -6.1115 2.1984 32 1 -0.6433 -4.7237 2.6601 33 1 -1.6596 -4.6541 0.4317 34 1 -1.1562 -6.3973 0.3550 35 1 0.2774 -4.2975 -1.0257 36 1 1.0912 -5.8079 -0.4265 37 1 2.9939 -4.6942 0.9152 38 1 2.4937 -4.1225 2.5655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694662130.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:24 Heat of formation + Delta-G solvation = 100.547620 kcal Electronic energy + Delta-G solvation = -20751.400118 eV Core-core repulsion = 17791.398130 eV Total energy + Delta-G solvation = -2960.001989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62362 -38.33361 -35.37008 -34.96511 -32.43171 -31.36504 -30.36935 -26.49693 -25.64908 -25.41477 -25.20771 -23.42721 -21.11147 -18.67405 -17.96734 -17.57782 -17.02549 -15.98364 -15.39675 -15.11253 -14.85427 -14.81925 -14.20045 -13.96139 -13.45573 -13.02520 -12.60590 -12.55573 -12.31696 -11.98077 -11.69890 -11.59673 -11.34106 -11.08231 -10.77660 -10.64117 -10.43293 -10.38199 -10.00216 -9.83921 -9.68309 -9.59380 -9.29652 -9.05889 -8.98444 -7.83801 -7.63756 -6.39182 -3.97136 3.10055 3.22452 3.28492 3.48109 3.63503 3.79506 4.12095 4.66816 4.73834 4.81946 4.92256 4.97025 5.04286 5.11687 5.18432 5.36155 5.37682 5.69304 5.82396 5.87170 5.96102 6.08781 6.13373 6.22244 6.25141 6.32006 6.37752 6.43422 6.59132 6.62232 6.69650 6.81853 6.90142 7.46959 7.51100 7.72712 8.09839 8.38722 8.45764 9.09833 9.29875 9.88051 10.63559 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.006342 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.176454 B = 4414.024071 C = 4775.075715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.139 4.139 3 C 0.199 3.801 4 N -0.439 5.439 5 C -0.317 4.317 6 H 0.099 0.901 7 C 0.033 3.967 8 N -0.864 5.864 9 Si 0.919 3.081 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.443 3.557 14 O -0.575 6.575 15 C 0.087 3.913 16 N -0.824 5.824 17 C -0.093 4.093 18 C -0.094 4.094 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.101 4.101 22 C -0.094 4.094 23 H 0.205 0.795 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.267 0.733 27 H 0.349 0.651 28 H 0.345 0.655 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 -8.613 -6.254 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.141 4.141 3 C 0.075 3.925 4 N -0.158 5.158 5 C -0.444 4.444 6 H 0.117 0.883 7 C -0.171 4.171 8 N -0.501 5.501 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.230 3.770 14 O -0.457 6.457 15 C -0.009 4.009 16 N -0.363 5.363 17 C -0.131 4.131 18 C -0.094 4.094 19 C -0.168 4.168 20 C -0.180 4.180 21 C -0.138 4.138 22 C -0.133 4.133 23 H 0.222 0.778 24 H 0.092 0.908 25 H 0.134 0.866 26 H 0.078 0.922 27 H 0.168 0.832 28 H 0.161 0.839 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.657 -9.320 -5.782 11.916 hybrid contribution 0.398 2.062 0.503 2.160 sum -4.259 -7.258 -5.279 9.934 Atomic orbital electron populations 1.24415 0.95496 1.04096 1.01763 1.23414 0.94635 0.97302 0.98715 1.19007 0.83743 1.03470 0.86309 1.43652 1.48249 1.10474 1.13420 1.19643 1.18179 0.85774 1.20834 0.88324 1.25349 0.96223 0.98149 0.97426 1.70077 1.20995 1.15906 1.43145 0.85990 0.81004 0.80137 0.78346 1.19169 1.20565 1.20826 1.20920 0.83545 0.84676 0.87853 1.90499 1.54847 1.79890 1.20486 1.21970 0.96367 0.95056 0.87521 1.58847 1.08495 1.58492 1.10443 1.22849 0.94039 0.93842 1.02370 1.22295 0.95589 0.94462 0.97020 1.22771 0.98050 0.99432 0.96534 1.22849 0.97195 1.00686 0.97291 1.22481 0.95915 0.99296 0.96152 1.22696 0.95333 0.93987 1.01280 0.77823 0.90834 0.86587 0.92241 0.83198 0.83854 0.89763 0.90328 0.90337 0.91801 0.90647 0.92137 0.91266 0.90409 0.91291 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.39 16.95 29.55 0.50 -3.89 16 2 C -0.14 -2.84 9.08 -37.12 -0.34 -3.18 16 3 C 0.20 4.20 4.67 -6.83 -0.03 4.16 16 4 N -0.44 -10.88 2.70 -117.93 -0.32 -11.20 16 5 C -0.32 -8.67 9.11 -14.93 -0.14 -8.80 16 6 H 0.10 2.85 7.59 -52.49 -0.40 2.46 16 7 C 0.03 0.86 4.78 -17.46 -0.08 0.78 16 8 N -0.86 -22.72 10.83 55.50 0.60 -22.12 16 9 Si 0.92 20.29 29.60 -169.99 -5.03 15.25 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.44 10.80 6.56 -10.99 -0.07 10.73 16 14 O -0.58 -16.15 15.68 5.55 0.09 -16.06 16 15 C 0.09 1.65 0.87 -131.77 -0.11 1.54 16 16 N -0.82 -13.39 8.21 0.61 0.01 -13.39 16 17 C -0.09 -1.63 5.88 -26.20 -0.15 -1.79 16 18 C -0.09 -1.41 1.04 -154.63 -0.16 -1.57 16 19 C -0.13 -1.71 7.84 -26.28 -0.21 -1.92 16 20 C -0.14 -1.66 8.08 -25.75 -0.21 -1.87 16 21 C -0.10 -1.31 7.80 -26.28 -0.21 -1.51 16 22 C -0.09 -1.66 7.06 -26.28 -0.19 -1.84 16 23 H 0.20 2.98 7.80 -54.10 -0.42 2.56 16 24 H 0.07 1.30 4.14 -51.93 -0.22 1.08 16 25 H 0.12 2.67 6.03 -51.93 -0.31 2.35 16 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.35 5.55 5.25 -39.29 -0.21 5.34 16 28 H 0.35 5.57 7.24 -39.29 -0.28 5.29 16 29 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 30 H 0.08 1.31 5.72 -51.93 -0.30 1.02 16 31 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.79 7.33 -51.93 -0.38 1.41 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -30.19 302.55 -6.52 -36.71 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.39 Total: -9.18 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.29 Total: -46.70 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.19 -6.52 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694662130.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.257 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds