Wall clock time and date at job start Mon Mar 30 2020 04:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47371 * 285.62321 * 3 2 1 5 5 C 1.37092 * 120.00259 * 245.55074 * 4 3 2 6 6 H 1.07997 * 120.00411 * 207.76897 * 5 4 3 7 7 C 1.38960 * 119.99678 * 27.77239 * 5 4 3 8 8 N 1.31411 * 119.99965 * 20.95597 * 7 5 4 9 9 Si 1.86797 * 119.99731 * 200.94989 * 7 5 4 10 10 H 1.48501 * 109.47464 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47132 * 120.00066 * 9 7 5 12 12 H 1.48501 * 109.47005 * 240.00014 * 9 7 5 13 13 C 1.34776 * 119.99418 * 65.54848 * 4 3 2 14 14 O 1.21293 * 119.99735 * 182.57251 * 13 4 3 15 15 C 1.50697 * 120.00592 * 2.57739 * 13 4 3 16 16 N 1.46907 * 112.82080 * 34.62576 * 15 13 4 17 17 C 1.53950 * 113.58082 * 263.53705 * 15 13 4 18 18 C 1.53076 * 86.72323 * 220.68751 * 17 15 13 19 19 C 1.52909 * 121.16876 * 150.58683 * 18 17 15 20 20 C 1.53950 * 86.78249 * 100.75262 * 19 18 17 21 21 C 1.52907 * 121.06494 * 259.11932 * 18 17 15 22 22 C 1.52908 * 88.07153 * 24.83419 * 18 17 15 23 23 H 4.40646 * 5.51320 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.47312 * 45.62365 * 3 2 1 25 25 H 1.08998 * 109.47085 * 165.62093 * 3 2 1 26 26 H 0.96997 * 119.99903 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99676 * 271.68574 * 16 15 13 28 28 H 1.00895 * 110.99961 * 35.63653 * 16 15 13 29 29 H 1.08995 * 113.65857 * 335.13655 * 17 15 13 30 30 H 1.08999 * 113.66347 * 106.18729 * 17 15 13 31 31 H 1.09008 * 113.65839 * 215.22072 * 19 18 17 32 32 H 1.08996 * 113.66732 * 346.27466 * 19 18 17 33 33 H 1.09000 * 113.57495 * 270.12463 * 20 19 18 34 34 H 1.09002 * 113.64962 * 139.34499 * 20 19 18 35 35 H 1.08991 * 113.66500 * 13.63176 * 21 18 17 36 36 H 1.09001 * 113.65932 * 144.69058 * 21 18 17 37 37 H 1.08998 * 113.66131 * 220.69814 * 22 18 17 38 38 H 1.09000 * 113.74719 * 89.64555 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.3711 1.3302 5 6 3.8260 0.5401 2.0859 6 1 4.5501 0.2011 2.8119 7 6 3.5950 1.9000 1.9178 8 7 2.4736 2.3134 1.3715 9 14 4.8786 3.1404 2.4685 10 1 6.0425 2.4238 3.0490 11 1 5.3231 3.9440 1.3015 12 1 4.2902 4.0395 3.4935 13 6 2.9042 -1.6090 1.8109 14 8 3.2677 -1.9021 2.9303 15 6 2.1952 -2.6289 0.9577 16 7 2.5208 -2.5033 -0.4693 17 6 0.6845 -2.7237 1.2387 18 6 0.8440 -4.2403 1.1049 19 6 -0.0671 -5.2022 1.8683 20 6 -0.8471 -5.3707 0.5518 21 6 0.4448 -4.9653 -0.1808 22 6 2.3133 -4.0679 1.4919 23 1 -1.0499 0.0002 0.0001 24 1 3.0097 -0.7179 -0.7345 25 1 3.0089 0.9963 -0.2552 26 1 2.3123 3.2627 1.2545 27 1 1.8966 -1.8560 -0.9270 28 1 3.4834 -2.2296 -0.5979 29 1 0.4049 -2.3999 2.2412 30 1 0.0659 -2.2777 0.4600 31 1 0.4354 -6.1115 2.1984 32 1 -0.6433 -4.7237 2.6601 33 1 -1.6596 -4.6541 0.4317 34 1 -1.1562 -6.3973 0.3550 35 1 0.2774 -4.2975 -1.0257 36 1 1.0912 -5.8079 -0.4265 37 1 2.9939 -4.6942 0.9152 38 1 2.4937 -4.1225 2.5655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694662130.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:23 Heat of formation + Delta-G solvation = 81.156749 kcal Electronic energy + Delta-G solvation = -20752.240970 eV Core-core repulsion = 17791.398130 eV Total energy + Delta-G solvation = -2960.842840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.07513 -39.91795 -37.26910 -36.39102 -34.19343 -33.10337 -31.83772 -28.22621 -27.39876 -26.72936 -26.44069 -24.86133 -22.55853 -20.26946 -19.67104 -18.94404 -18.66985 -17.66494 -17.03437 -16.70431 -16.23594 -16.01666 -15.91666 -15.66247 -15.14766 -14.46554 -14.24686 -14.05185 -13.64952 -13.50560 -13.42694 -12.92995 -12.85763 -12.71775 -12.56934 -12.18741 -11.93843 -11.76348 -11.39504 -11.23780 -11.05530 -10.98823 -10.94494 -10.64926 -10.60116 -9.76764 -9.31849 -8.38170 -6.05701 1.31352 1.38864 1.52117 1.80121 1.98754 2.14502 2.29206 2.94327 3.08046 3.34962 3.53675 3.64668 3.72620 3.86255 3.89580 3.97107 4.07895 4.29631 4.56691 4.65995 4.78007 4.82995 4.88259 4.93043 5.00072 5.06129 5.08989 5.18375 5.21874 5.30237 5.37506 5.40354 5.63389 5.69423 5.94990 6.11435 6.35809 6.44496 6.92733 7.10103 7.35541 7.94544 8.61374 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.006342 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.176454 B = 4414.024071 C = 4775.075715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C 0.202 3.798 4 N -0.448 5.448 5 C -0.356 4.356 6 H 0.068 0.932 7 C 0.005 3.995 8 N -0.876 5.876 9 Si 0.984 3.016 10 H -0.274 1.274 11 H -0.261 1.261 12 H -0.281 1.281 13 C 0.427 3.573 14 O -0.628 6.628 15 C 0.093 3.907 16 N -0.803 5.803 17 C -0.090 4.090 18 C -0.088 4.088 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.094 4.094 22 C -0.097 4.097 23 H 0.242 0.758 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.273 0.727 27 H 0.354 0.646 28 H 0.346 0.654 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 -9.164 -8.117 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C 0.079 3.921 4 N -0.165 5.165 5 C -0.483 4.483 6 H 0.085 0.915 7 C -0.199 4.199 8 N -0.513 5.513 9 Si 0.807 3.193 10 H -0.198 1.198 11 H -0.186 1.186 12 H -0.207 1.207 13 C 0.215 3.785 14 O -0.514 6.514 15 C -0.004 4.004 16 N -0.342 5.342 17 C -0.128 4.128 18 C -0.088 4.088 19 C -0.170 4.170 20 C -0.167 4.167 21 C -0.131 4.131 22 C -0.136 4.136 23 H 0.258 0.742 24 H 0.124 0.876 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.174 0.826 28 H 0.163 0.837 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.190 -9.861 -7.698 13.958 hybrid contribution 0.842 2.277 1.113 2.670 sum -5.349 -7.585 -6.585 11.380 Atomic orbital electron populations 1.25286 0.96317 1.01774 0.99326 1.23419 0.94921 0.99454 1.00912 1.19057 0.84813 1.03141 0.85068 1.43875 1.47833 1.10342 1.14496 1.19552 1.19326 0.87272 1.22167 0.91458 1.26046 0.97797 0.99006 0.97032 1.70140 1.21763 1.16527 1.42845 0.85041 0.78259 0.77589 0.78385 1.19841 1.18554 1.20699 1.22027 0.82989 0.85451 0.87996 1.90446 1.57012 1.80923 1.23022 1.21962 0.96686 0.93917 0.87817 1.58877 1.08714 1.58221 1.08385 1.22754 0.92826 0.96186 1.01058 1.22298 0.93612 0.93231 0.99674 1.22838 0.97806 0.99082 0.97281 1.22801 0.96528 1.02202 0.95141 1.22508 0.96633 0.99182 0.94822 1.22664 0.97902 0.93228 0.99772 0.74170 0.87626 0.88781 0.91736 0.82618 0.83692 0.92633 0.89063 0.89250 0.92366 0.90174 0.89896 0.91089 0.89242 0.90184 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.18 16.95 74.32 1.26 -5.92 16 2 C -0.19 -7.41 9.08 31.12 0.28 -7.13 16 3 C 0.20 8.60 4.67 84.57 0.40 9.00 16 4 N -0.45 -22.98 2.70 -645.41 -1.74 -24.72 16 5 C -0.36 -20.32 9.11 84.04 0.77 -19.56 16 6 H 0.07 4.17 7.59 -2.91 -0.02 4.15 16 7 C 0.00 0.26 4.78 84.93 0.41 0.66 16 8 N -0.88 -46.25 10.83 21.67 0.23 -46.01 16 9 Si 0.98 42.17 29.60 68.60 2.03 44.20 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.43 21.69 6.56 87.66 0.58 22.26 16 14 O -0.63 -37.52 15.68 -3.07 -0.05 -37.57 16 15 C 0.09 3.53 0.87 3.42 0.00 3.53 16 16 N -0.80 -25.13 8.21 -151.98 -1.25 -26.38 16 17 C -0.09 -3.12 5.88 30.94 0.18 -2.93 16 18 C -0.09 -2.52 1.04 -52.26 -0.05 -2.57 16 19 C -0.13 -3.20 7.84 30.88 0.24 -2.95 16 20 C -0.13 -2.53 8.08 31.23 0.25 -2.27 16 21 C -0.09 -2.11 7.80 30.88 0.24 -1.87 16 22 C -0.10 -3.41 7.06 30.89 0.22 -3.19 16 23 H 0.24 6.08 7.80 -4.42 -0.03 6.04 16 24 H 0.11 3.68 4.14 -2.39 -0.01 3.67 16 25 H 0.09 4.39 6.03 -2.39 -0.01 4.38 16 26 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.35 10.62 5.25 -89.69 -0.47 10.14 16 28 H 0.35 10.90 7.24 -89.70 -0.65 10.25 16 29 H 0.05 2.23 8.09 -2.39 -0.02 2.21 16 30 H 0.09 2.86 5.72 -2.39 -0.01 2.85 16 31 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.06 2.64 7.33 -2.39 -0.02 2.62 16 Total: -1.00 -68.31 302.55 3.96 -64.35 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.04 Total: 39.08 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.77 Total: -12.96 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -2.75 Total: -97.11 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.05 Total: -37.57 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -68.31 3.96 -64.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694662130.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.507 kcal (2) G-P(sol) polarization free energy of solvation -68.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds