Wall clock time and date at job start Mon Mar 30 2020 04:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00153 * 2 1 4 4 C 1.50694 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.38364 * 119.85383 * 269.72299 * 4 3 2 6 6 C 1.37957 * 120.14261 * 180.28076 * 5 4 3 7 7 C 1.39576 * 119.85603 * 359.97438 * 6 5 4 8 8 C 1.47848 * 120.14267 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99951 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99893 * 0.02562 * 8 7 6 11 11 C 1.46501 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47060 * 325.00019 * 11 10 8 13 13 C 1.52999 * 109.47358 * 85.00298 * 11 10 8 14 14 C 1.50696 * 109.46942 * 205.00087 * 11 10 8 15 15 H 1.08005 * 120.00236 * 0.02562 * 14 11 10 16 16 C 1.37883 * 119.99797 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00230 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99625 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47345 * 60.00482 * 18 16 14 20 20 H 1.48502 * 109.46907 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47323 * 300.00031 * 18 16 14 22 22 C 1.39575 * 119.71174 * 0.02562 * 7 6 5 23 23 C 1.37955 * 119.85214 * 0.02562 * 22 7 6 24 24 H 1.09001 * 109.47013 * 59.99858 * 1 2 3 25 25 H 1.08997 * 109.47497 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47111 * 300.00224 * 1 2 3 27 27 H 1.00893 * 110.99880 * 236.04281 * 2 1 3 28 28 H 1.08999 * 109.46789 * 59.99856 * 3 2 1 29 29 H 1.09002 * 109.46847 * 299.99712 * 3 2 1 30 30 H 1.07993 * 119.92259 * 0.28327 * 5 4 3 31 31 H 1.08000 * 120.06785 * 179.97438 * 6 5 4 32 32 H 0.96994 * 120.00399 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.46996 * 299.99894 * 13 11 10 34 34 H 1.08996 * 109.47143 * 59.99304 * 13 11 10 35 35 H 1.08995 * 109.47123 * 180.02562 * 13 11 10 36 36 H 0.96999 * 120.00333 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.07330 * 179.97438 * 22 7 6 38 38 H 1.08004 * 119.92780 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1901 1.3187 1.2009 6 6 5.5693 1.2878 1.2085 7 6 6.2704 1.2684 0.0017 8 6 7.7485 1.2357 0.0024 9 8 8.3565 1.2194 -1.0500 10 7 8.4218 1.2241 1.1699 11 6 9.8864 1.1923 1.1705 12 1 10.2372 0.5929 0.3303 13 6 10.4276 2.6175 1.0414 14 6 10.3751 0.5843 2.4599 15 1 9.6656 0.2542 3.2043 16 6 11.7280 0.4485 2.6888 17 7 12.5919 0.8500 1.7822 18 14 12.3337 -0.3057 4.2869 19 1 11.8082 -1.6890 4.4119 20 1 13.8184 -0.3379 4.2876 21 1 11.8563 0.5105 5.4318 22 6 5.5701 1.2811 -1.2055 23 6 4.1910 1.3132 -1.1991 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8305 -0.5261 -0.7813 28 1 1.6460 1.8947 0.8900 29 1 1.6460 1.8947 -0.8900 30 1 3.6463 1.3333 2.1339 31 1 6.1052 1.2785 2.1460 32 1 7.9366 1.2367 2.0097 33 1 10.0741 3.0573 0.1087 34 1 10.0768 3.2168 1.8815 35 1 11.5173 2.5938 1.0414 36 1 13.5437 0.7542 1.9431 37 1 6.1068 1.2666 -2.1427 38 1 3.6478 1.3234 -2.1326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695390821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:45 Heat of formation + Delta-G solvation = -17.684367 kcal Electronic energy + Delta-G solvation = -18818.947076 eV Core-core repulsion = 15853.818163 eV Total energy + Delta-G solvation = -2965.128912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82364 -38.24298 -36.05446 -34.80104 -32.56531 -31.57815 -30.88515 -28.89155 -26.93560 -25.24728 -24.14389 -22.61906 -22.25187 -20.77374 -19.41058 -17.95439 -16.59806 -15.85603 -15.81656 -15.12553 -14.95391 -14.77811 -14.25833 -14.18404 -14.08492 -13.57323 -13.37778 -12.78879 -12.48057 -12.41453 -12.29684 -11.98467 -11.66027 -11.35935 -11.08828 -10.96160 -10.93928 -10.73263 -10.32262 -10.22362 -9.13256 -9.04456 -8.96618 -8.86895 -8.64347 -8.54058 -7.89747 -6.11376 -4.20906 0.99400 1.45091 3.26011 3.27134 3.31873 3.33292 4.02030 4.07118 4.26863 4.38822 4.59811 4.73239 4.99381 5.00644 5.08109 5.18834 5.20782 5.31650 5.41399 5.44214 5.53462 5.68270 5.90002 6.05557 6.36745 6.50223 6.53241 6.59929 6.83993 6.94511 6.98379 7.00297 7.15749 7.45285 7.56996 7.70284 7.92328 8.15419 8.65686 8.78110 9.10523 9.46480 10.94655 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033515 B = 0.003709 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.239914 B = 7547.576156 C = 8116.106901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.691 5.691 3 C 0.098 3.902 4 C -0.076 4.076 5 C -0.105 4.105 6 C -0.089 4.089 7 C -0.117 4.117 8 C 0.540 3.460 9 O -0.552 6.552 10 N -0.701 5.701 11 C 0.264 3.736 12 H 0.050 0.950 13 C -0.147 4.147 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.066 4.066 23 C -0.124 4.124 24 H 0.021 0.979 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.345 0.655 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.388 0.612 33 H 0.015 0.985 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.911 1.249 -2.086 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.321 5.321 3 C -0.031 4.031 4 C -0.076 4.076 5 C -0.124 4.124 6 C -0.108 4.108 7 C -0.121 4.121 8 C 0.326 3.674 9 O -0.432 6.432 10 N -0.349 5.349 11 C 0.162 3.838 12 H 0.068 0.932 13 C -0.206 4.206 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.085 4.085 23 C -0.143 4.143 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.162 0.838 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.222 0.778 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.179 1.181 -2.161 20.328 hybrid contribution -0.041 -0.110 0.389 0.406 sum -20.219 1.071 -1.772 20.325 Atomic orbital electron populations 1.22214 0.87626 1.02039 1.00402 1.60425 1.07592 1.13634 1.50478 1.20930 0.90757 0.90034 1.01366 1.19844 0.94730 0.99626 0.93425 1.20907 0.93661 1.00206 0.97628 1.21410 0.94331 0.97475 0.97552 1.20357 0.94321 1.03287 0.94113 1.18268 0.86390 0.77831 0.84959 1.90716 1.69726 1.51379 1.31396 1.46499 1.10284 1.71454 1.06635 1.18775 0.72704 0.94113 0.98163 0.93232 1.22081 1.04468 0.97277 0.96757 1.21182 0.92165 1.41657 1.02372 0.92093 1.24887 0.96527 0.95171 0.97080 1.69890 1.02208 1.46015 1.33974 0.86494 0.77647 0.79724 0.83153 1.20133 1.21122 1.20141 1.21247 0.93514 0.95609 0.98093 1.20954 0.94020 1.01988 0.97341 0.96047 0.91274 0.91620 0.83759 0.90037 0.94256 0.85607 0.85302 0.77826 0.96593 0.95422 0.89062 0.92492 0.84749 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.70 60.06 0.64 0.82 16 2 N -0.69 -5.97 6.84 -122.42 -0.84 -6.80 16 3 C 0.10 0.85 5.81 -4.98 -0.03 0.82 16 4 C -0.08 -0.83 5.40 -104.53 -0.56 -1.40 16 5 C -0.11 -1.25 9.68 -39.64 -0.38 -1.63 16 6 C -0.09 -1.23 9.54 -39.19 -0.37 -1.61 16 7 C -0.12 -1.96 5.87 -104.97 -0.62 -2.57 16 8 C 0.54 11.47 7.74 -12.33 -0.10 11.38 16 9 O -0.55 -13.74 16.01 5.32 0.09 -13.65 16 10 N -0.70 -15.18 5.02 -55.88 -0.28 -15.46 16 11 C 0.26 6.86 2.56 -69.08 -0.18 6.69 16 12 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 13 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 14 C -0.54 -14.36 8.73 -34.44 -0.30 -14.66 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 16 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -25.08 11.32 55.43 0.63 -24.46 16 18 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.07 -0.97 9.60 -39.19 -0.38 -1.35 16 23 C -0.12 -1.45 9.68 -39.64 -0.38 -1.84 16 24 H 0.02 0.13 8.14 -51.93 -0.42 -0.30 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.34 2.82 8.81 -39.30 -0.35 2.47 16 28 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.63 6.41 -52.49 -0.34 1.29 16 32 H 0.39 7.26 6.57 -40.82 -0.27 6.99 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.13 2.03 7.65 -52.49 -0.40 1.63 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -31.21 322.04 -8.38 -39.59 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.40 Total: 7.24 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.41 Total: -7.03 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.49 Total: -46.72 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.21 -8.38 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695390821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.907 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds