Wall clock time and date at job start Mon Mar 30 2020 04:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00153 * 2 1 4 4 C 1.50694 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.38364 * 119.85383 * 269.72299 * 4 3 2 6 6 C 1.37957 * 120.14261 * 180.28076 * 5 4 3 7 7 C 1.39576 * 119.85603 * 359.97438 * 6 5 4 8 8 C 1.47848 * 120.14267 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99951 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99893 * 0.02562 * 8 7 6 11 11 C 1.46501 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47060 * 325.00019 * 11 10 8 13 13 C 1.52999 * 109.47358 * 85.00298 * 11 10 8 14 14 C 1.50696 * 109.46942 * 205.00087 * 11 10 8 15 15 H 1.08005 * 120.00236 * 0.02562 * 14 11 10 16 16 C 1.37883 * 119.99797 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00230 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99625 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47345 * 60.00482 * 18 16 14 20 20 H 1.48502 * 109.46907 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47323 * 300.00031 * 18 16 14 22 22 C 1.39575 * 119.71174 * 0.02562 * 7 6 5 23 23 C 1.37955 * 119.85214 * 0.02562 * 22 7 6 24 24 H 1.09001 * 109.47013 * 59.99858 * 1 2 3 25 25 H 1.08997 * 109.47497 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47111 * 300.00224 * 1 2 3 27 27 H 1.00893 * 110.99880 * 236.04281 * 2 1 3 28 28 H 1.08999 * 109.46789 * 59.99856 * 3 2 1 29 29 H 1.09002 * 109.46847 * 299.99712 * 3 2 1 30 30 H 1.07993 * 119.92259 * 0.28327 * 5 4 3 31 31 H 1.08000 * 120.06785 * 179.97438 * 6 5 4 32 32 H 0.96994 * 120.00399 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.46996 * 299.99894 * 13 11 10 34 34 H 1.08996 * 109.47143 * 59.99304 * 13 11 10 35 35 H 1.08995 * 109.47123 * 180.02562 * 13 11 10 36 36 H 0.96999 * 120.00333 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.07330 * 179.97438 * 22 7 6 38 38 H 1.08004 * 119.92780 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1901 1.3187 1.2009 6 6 5.5693 1.2878 1.2085 7 6 6.2704 1.2684 0.0017 8 6 7.7485 1.2357 0.0024 9 8 8.3565 1.2194 -1.0500 10 7 8.4218 1.2241 1.1699 11 6 9.8864 1.1923 1.1705 12 1 10.2372 0.5929 0.3303 13 6 10.4276 2.6175 1.0414 14 6 10.3751 0.5843 2.4599 15 1 9.6656 0.2542 3.2043 16 6 11.7280 0.4485 2.6888 17 7 12.5919 0.8500 1.7822 18 14 12.3337 -0.3057 4.2869 19 1 11.8082 -1.6890 4.4119 20 1 13.8184 -0.3379 4.2876 21 1 11.8563 0.5105 5.4318 22 6 5.5701 1.2811 -1.2055 23 6 4.1910 1.3132 -1.1991 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8305 -0.5261 -0.7813 28 1 1.6460 1.8947 0.8900 29 1 1.6460 1.8947 -0.8900 30 1 3.6463 1.3333 2.1339 31 1 6.1052 1.2785 2.1460 32 1 7.9366 1.2367 2.0097 33 1 10.0741 3.0573 0.1087 34 1 10.0768 3.2168 1.8815 35 1 11.5173 2.5938 1.0414 36 1 13.5437 0.7542 1.9431 37 1 6.1068 1.2666 -2.1427 38 1 3.6478 1.3234 -2.1326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695390821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:45 Heat of formation + Delta-G solvation = -39.533326 kcal Electronic energy + Delta-G solvation = -18819.894518 eV Core-core repulsion = 15853.818163 eV Total energy + Delta-G solvation = -2966.076354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16481 -39.61127 -36.89658 -36.66932 -34.44446 -32.75080 -31.96431 -30.67231 -27.85608 -27.35182 -24.99551 -23.80790 -23.36448 -22.30716 -21.08217 -19.51397 -17.94926 -17.34421 -17.15118 -16.58226 -16.06649 -15.94538 -15.52475 -15.50601 -15.30930 -14.77674 -14.50229 -14.27444 -14.05285 -13.73489 -13.38326 -13.03503 -12.96043 -12.86853 -12.74595 -12.59088 -12.31224 -12.24727 -12.14930 -11.94685 -11.14914 -10.86981 -10.60428 -10.01246 -9.92995 -9.68996 -9.34593 -8.18704 -6.37058 -0.14531 0.43449 1.45001 1.47653 1.55439 1.92563 2.33067 2.57184 2.87079 3.11669 3.48144 3.75046 3.83353 3.98048 4.05581 4.29985 4.42456 4.55448 4.61001 4.69104 4.72428 4.74651 4.88949 4.90618 5.05603 5.07978 5.09733 5.31340 5.37333 5.45646 5.56068 5.56859 5.65622 5.87132 5.92792 6.03700 6.06467 6.41530 6.69375 6.89360 7.28887 7.46764 8.87776 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033515 B = 0.003709 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.239914 B = 7547.576156 C = 8116.106901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.704 5.704 3 C 0.100 3.900 4 C -0.060 4.060 5 C -0.103 4.103 6 C -0.088 4.088 7 C -0.147 4.147 8 C 0.536 3.464 9 O -0.600 6.600 10 N -0.698 5.698 11 C 0.270 3.730 12 H -0.002 1.002 13 C -0.134 4.134 14 C -0.551 4.551 15 H 0.074 0.926 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.975 3.025 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.078 4.078 23 C -0.116 4.116 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.346 0.654 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.404 0.596 33 H 0.010 0.990 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.267 0.733 37 H 0.120 0.880 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.894 1.121 -0.359 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.335 5.335 3 C -0.028 4.028 4 C -0.061 4.061 5 C -0.121 4.121 6 C -0.107 4.107 7 C -0.150 4.150 8 C 0.325 3.675 9 O -0.484 6.484 10 N -0.346 5.346 11 C 0.167 3.833 12 H 0.016 0.984 13 C -0.193 4.193 14 C -0.589 4.589 15 H 0.092 0.908 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.800 3.200 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.097 4.097 23 C -0.135 4.135 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.164 0.836 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.171 0.829 31 H 0.156 0.844 32 H 0.240 0.760 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.138 0.862 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.212 1.057 -0.410 23.240 hybrid contribution 0.753 -0.073 -0.217 0.788 sum -22.458 0.984 -0.628 22.489 Atomic orbital electron populations 1.22247 0.86342 1.02634 1.00969 1.60427 1.08869 1.13446 1.50808 1.20956 0.88600 0.90531 1.02709 1.20217 0.96351 0.96790 0.92764 1.21221 0.92682 0.99020 0.99193 1.21516 0.95413 0.97064 0.96661 1.20017 0.91152 1.07579 0.96236 1.19015 0.88532 0.76129 0.83831 1.90675 1.71320 1.53487 1.32912 1.46232 1.08707 1.71825 1.07858 1.18394 0.75226 0.93437 0.96283 0.98381 1.21906 1.02985 0.97320 0.97056 1.21510 0.92844 1.41887 1.02641 0.90759 1.25837 0.96669 0.95433 1.00632 1.70045 1.02505 1.46970 1.36059 0.85348 0.76860 0.78969 0.78872 1.19537 1.21087 1.18674 1.21279 0.95006 0.96438 0.96945 1.21201 0.92523 1.00595 0.99141 0.95176 0.90764 0.91287 0.83633 0.88943 0.92767 0.82929 0.84432 0.75971 0.97043 0.93920 0.91197 0.92436 0.86160 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 127.69 1.37 1.63 16 2 N -0.70 -9.70 6.84 -541.24 -3.70 -13.40 16 3 C 0.10 1.33 5.81 85.55 0.50 1.83 16 4 C -0.06 -1.13 5.40 -19.81 -0.11 -1.24 16 5 C -0.10 -2.11 9.68 22.23 0.22 -1.89 16 6 C -0.09 -2.31 9.54 22.53 0.21 -2.09 16 7 C -0.15 -4.92 5.87 -20.09 -0.12 -5.04 16 8 C 0.54 23.78 7.74 86.79 0.67 24.45 16 9 O -0.60 -31.83 16.01 -3.87 -0.06 -31.89 16 10 N -0.70 -31.07 5.02 -448.99 -2.25 -33.32 16 11 C 0.27 14.60 2.56 44.24 0.11 14.71 16 12 H 0.00 -0.11 7.58 -2.39 -0.02 -0.13 16 13 C -0.13 -7.04 9.26 71.98 0.67 -6.38 16 14 C -0.55 -29.85 8.73 25.60 0.22 -29.62 16 15 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 16 C 0.01 0.79 5.30 84.66 0.45 1.24 16 17 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 18 Si 0.98 42.33 29.54 68.60 2.03 44.36 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 C -0.08 -2.29 9.60 22.53 0.22 -2.07 16 23 C -0.12 -2.45 9.68 22.23 0.22 -2.23 16 24 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.35 4.57 8.81 -89.70 -0.79 3.78 16 28 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 29 H 0.05 0.60 8.08 -2.39 -0.02 0.58 16 30 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.14 3.26 6.41 -2.91 -0.02 3.24 16 32 H 0.40 15.11 6.57 -92.71 -0.61 14.50 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 36 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.12 3.81 7.65 -2.91 -0.02 3.79 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -70.07 322.04 0.54 -69.53 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.33 Total: 24.65 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.62 Total: -6.71 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -5.72 Total: -99.94 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.06 Total: -31.89 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.07 0.54 -69.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695390821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds