Wall clock time and date at job start Mon Mar 30 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.41573 * 2 1 4 4 C 1.38629 * 118.41671 * 180.02562 * 3 2 1 5 5 C 1.38221 * 119.16626 * 359.97438 * 4 3 2 6 6 N 1.31854 * 120.76103 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72624 * 359.71091 * 6 5 4 8 8 C 1.50705 * 119.61940 * 180.31088 * 7 6 5 9 9 C 1.50700 * 109.46657 * 270.26127 * 8 7 6 10 10 O 1.21284 * 120.00171 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00061 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99512 * 0.02562 * 11 9 8 13 13 C 1.46491 * 120.00369 * 180.02562 * 11 9 8 14 14 H 1.09006 * 109.47042 * 0.02562 * 13 11 9 15 15 C 1.52994 * 109.47400 * 240.00336 * 13 11 9 16 16 C 1.50708 * 109.47386 * 120.00167 * 13 11 9 17 17 H 1.08000 * 119.99446 * 0.02562 * 16 13 11 18 18 C 1.37867 * 120.00262 * 180.02562 * 16 13 11 19 19 N 1.31516 * 120.00513 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99878 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47307 * 89.99996 * 20 18 16 22 22 H 1.48506 * 109.47054 * 209.99761 * 20 18 16 23 23 H 1.48498 * 109.47234 * 329.99906 * 20 18 16 24 24 H 1.09002 * 109.47152 * 89.99975 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00076 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00057 * 1 2 3 27 27 H 1.07998 * 120.79398 * 0.02674 * 3 2 1 28 28 H 1.08004 * 120.41609 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.62281 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47404 * 30.26096 * 8 7 6 31 31 H 1.09001 * 109.47022 * 150.26856 * 8 7 6 32 32 H 1.09004 * 109.47584 * 90.00105 * 12 11 9 33 33 H 1.09007 * 109.47273 * 209.99879 * 12 11 9 34 34 H 1.08996 * 109.47496 * 329.99353 * 12 11 9 35 35 H 1.09001 * 109.47224 * 180.02562 * 15 13 11 36 36 H 1.09001 * 109.47443 * 299.99728 * 15 13 11 37 37 H 1.09000 * 109.47402 * 59.99834 * 15 13 11 38 38 H 0.96995 * 120.00769 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0072 8 6 1.4540 -2.4972 0.0152 9 6 1.2015 -2.9400 -1.4030 10 8 1.5945 -2.2624 -2.3289 11 7 0.5399 -4.0896 -1.6423 12 6 0.0657 -4.9082 -0.5238 13 6 0.2949 -4.5204 -3.0209 14 1 0.7179 -3.7898 -3.7105 15 6 -1.2120 -4.6346 -3.2594 16 6 0.9430 -5.8614 -3.2509 17 1 1.4829 -6.3446 -2.4500 18 6 0.8466 -6.4714 -4.4835 19 7 0.1886 -5.8833 -5.4586 20 14 1.6493 -8.1339 -4.7682 21 1 0.6846 -9.2128 -4.4357 22 1 2.0519 -8.2517 -6.1928 23 1 2.8494 -8.2589 -3.9026 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6890 2.1423 0.0004 28 1 4.1735 2.0593 -0.0010 29 1 5.3046 -0.1285 -0.0014 30 1 2.0441 -3.2537 0.5325 31 1 0.5020 -2.3646 0.5293 32 1 -0.9424 -4.5984 -0.2484 33 1 0.0551 -5.9572 -0.8201 34 1 0.7315 -4.7785 0.3293 35 1 -1.3942 -4.9556 -4.2850 36 1 -1.6347 -5.3654 -2.5699 37 1 -1.6808 -3.6647 -3.0931 38 1 0.1211 -6.3122 -6.3260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700868490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:43 Heat of formation + Delta-G solvation = -3.681876 kcal Electronic energy + Delta-G solvation = -19790.820290 eV Core-core repulsion = 16826.298572 eV Total energy + Delta-G solvation = -2964.521719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38545 -38.74356 -35.30556 -33.73033 -33.03809 -32.59246 -29.82928 -28.20525 -26.88678 -26.00318 -25.18797 -22.86788 -21.97829 -20.74348 -18.30043 -16.78646 -16.58224 -16.47681 -15.97905 -15.26542 -14.77590 -14.54066 -14.26489 -13.84185 -13.11262 -13.06510 -12.82517 -12.66001 -12.48785 -12.41159 -12.36405 -11.78991 -11.48303 -11.44871 -11.16309 -11.01974 -10.78465 -10.66083 -10.23539 -10.14242 -9.64591 -9.27948 -9.16582 -8.97900 -8.57910 -8.39445 -7.55194 -6.04578 -4.12325 1.21951 1.40712 3.28335 3.35412 3.38136 3.44457 3.75325 4.14913 4.41527 4.47809 4.75014 4.83848 4.98914 5.08866 5.25794 5.30586 5.37789 5.50805 5.58758 5.67551 5.72692 5.77451 5.93495 6.04935 6.08665 6.23324 6.34963 6.39682 6.76801 6.81839 6.86078 7.08953 7.45694 7.56839 7.74643 8.04842 8.17354 8.23167 8.56229 8.86684 9.10209 9.54138 11.00789 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.004951 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.027734 B = 5653.560042 C = 5959.014951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.178 4.178 5 C 0.094 3.906 6 N -0.472 5.472 7 C 0.160 3.840 8 C -0.100 4.100 9 C 0.513 3.487 10 O -0.546 6.546 11 N -0.594 5.594 12 C 0.082 3.918 13 C 0.258 3.742 14 H 0.062 0.938 15 C -0.145 4.145 16 C -0.525 4.525 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.029 0.971 37 H 0.010 0.990 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 10.272 13.651 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.198 4.198 5 C -0.063 4.063 6 N -0.180 5.180 7 C 0.021 3.979 8 C -0.140 4.140 9 C 0.298 3.702 10 O -0.424 6.424 11 N -0.325 5.325 12 C -0.062 4.062 13 C 0.158 3.842 14 H 0.080 0.920 15 C -0.204 4.204 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.048 0.952 37 H 0.029 0.971 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.771 9.771 12.941 16.234 hybrid contribution 0.049 -0.161 -0.214 0.273 sum 0.820 9.610 12.727 15.968 Atomic orbital electron populations 1.20819 0.90425 1.02628 1.03177 1.20640 0.97488 0.93559 1.00871 1.21384 0.94171 0.97775 0.97140 1.22051 0.95253 0.99444 1.03032 1.22651 1.00103 0.87645 0.95901 1.67417 1.07756 1.31561 1.11239 1.20447 0.89533 0.93619 0.94274 1.20745 1.00853 0.94718 0.97688 1.20007 0.78778 0.81688 0.89689 1.90666 1.51431 1.54635 1.45707 1.48209 1.54434 1.20537 1.09340 1.21628 0.97774 0.97883 0.88960 1.18925 0.92861 0.95906 0.76511 0.91992 1.22074 0.97297 0.96893 1.04089 1.21331 1.33910 1.03562 0.97530 0.92221 1.24890 0.95209 0.97925 0.95773 1.69878 1.41396 1.38443 1.02966 0.86495 0.79670 0.83725 0.77516 1.20619 1.21123 1.19904 0.90371 0.91525 0.91050 0.85112 0.85109 0.83015 0.87578 0.87744 0.93855 0.90023 0.92744 0.88893 0.95162 0.97089 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.63 36.01 0.35 -0.98 16 2 C -0.12 -1.77 5.90 -104.48 -0.62 -2.38 16 3 C -0.08 -0.97 9.86 -39.28 -0.39 -1.36 16 4 C -0.18 -2.11 10.11 -39.44 -0.40 -2.51 16 5 C 0.09 1.32 11.18 -17.55 -0.20 1.12 16 6 N -0.47 -8.16 10.27 -9.47 -0.10 -8.26 16 7 C 0.16 2.65 5.27 -82.59 -0.44 2.22 16 8 C -0.10 -1.59 4.14 -29.03 -0.12 -1.71 16 9 C 0.51 10.92 7.67 -10.98 -0.08 10.84 16 10 O -0.55 -14.07 15.36 5.55 0.09 -13.98 16 11 N -0.59 -12.82 2.75 -175.26 -0.48 -13.30 16 12 C 0.08 1.35 9.24 59.85 0.55 1.90 16 13 C 0.26 6.70 2.64 -69.09 -0.18 6.52 16 14 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 15 C -0.14 -3.49 8.97 37.15 0.33 -3.15 16 16 C -0.52 -14.39 7.99 -34.44 -0.28 -14.67 16 17 H 0.06 1.61 7.33 -52.49 -0.38 1.23 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.46 11.32 55.43 0.63 -24.84 16 20 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.07 0.76 5.95 -51.93 -0.31 0.45 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.11 1.58 7.40 -51.93 -0.38 1.19 16 31 H 0.10 1.31 5.91 -51.93 -0.31 1.00 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 34 H 0.05 0.73 6.44 -51.93 -0.33 0.40 16 35 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 36 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 37 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -33.82 314.15 -6.96 -40.77 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.25 Total: 1.06 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.56 Total: -2.49 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.05 Total: -46.39 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.82 -6.96 -40.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700868490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.092 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds