Wall clock time and date at job start Mon Mar 30 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.41573 * 2 1 4 4 C 1.38629 * 118.41671 * 180.02562 * 3 2 1 5 5 C 1.38221 * 119.16626 * 359.97438 * 4 3 2 6 6 N 1.31854 * 120.76103 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72624 * 359.71091 * 6 5 4 8 8 C 1.50705 * 119.61940 * 180.31088 * 7 6 5 9 9 C 1.50700 * 109.46657 * 270.26127 * 8 7 6 10 10 O 1.21284 * 120.00171 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00061 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99512 * 0.02562 * 11 9 8 13 13 C 1.46491 * 120.00369 * 180.02562 * 11 9 8 14 14 H 1.09006 * 109.47042 * 0.02562 * 13 11 9 15 15 C 1.52994 * 109.47400 * 240.00336 * 13 11 9 16 16 C 1.50708 * 109.47386 * 120.00167 * 13 11 9 17 17 H 1.08000 * 119.99446 * 0.02562 * 16 13 11 18 18 C 1.37867 * 120.00262 * 180.02562 * 16 13 11 19 19 N 1.31516 * 120.00513 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99878 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47307 * 89.99996 * 20 18 16 22 22 H 1.48506 * 109.47054 * 209.99761 * 20 18 16 23 23 H 1.48498 * 109.47234 * 329.99906 * 20 18 16 24 24 H 1.09002 * 109.47152 * 89.99975 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00076 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00057 * 1 2 3 27 27 H 1.07998 * 120.79398 * 0.02674 * 3 2 1 28 28 H 1.08004 * 120.41609 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.62281 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47404 * 30.26096 * 8 7 6 31 31 H 1.09001 * 109.47022 * 150.26856 * 8 7 6 32 32 H 1.09004 * 109.47584 * 90.00105 * 12 11 9 33 33 H 1.09007 * 109.47273 * 209.99879 * 12 11 9 34 34 H 1.08996 * 109.47496 * 329.99353 * 12 11 9 35 35 H 1.09001 * 109.47224 * 180.02562 * 15 13 11 36 36 H 1.09001 * 109.47443 * 299.99728 * 15 13 11 37 37 H 1.09000 * 109.47402 * 59.99834 * 15 13 11 38 38 H 0.96995 * 120.00769 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0072 8 6 1.4540 -2.4972 0.0152 9 6 1.2015 -2.9400 -1.4030 10 8 1.5945 -2.2624 -2.3289 11 7 0.5399 -4.0896 -1.6423 12 6 0.0657 -4.9082 -0.5238 13 6 0.2949 -4.5204 -3.0209 14 1 0.7179 -3.7898 -3.7105 15 6 -1.2120 -4.6346 -3.2594 16 6 0.9430 -5.8614 -3.2509 17 1 1.4829 -6.3446 -2.4500 18 6 0.8466 -6.4714 -4.4835 19 7 0.1886 -5.8833 -5.4586 20 14 1.6493 -8.1339 -4.7682 21 1 0.6846 -9.2128 -4.4357 22 1 2.0519 -8.2517 -6.1928 23 1 2.8494 -8.2589 -3.9026 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6890 2.1423 0.0004 28 1 4.1735 2.0593 -0.0010 29 1 5.3046 -0.1285 -0.0014 30 1 2.0441 -3.2537 0.5325 31 1 0.5020 -2.3646 0.5293 32 1 -0.9424 -4.5984 -0.2484 33 1 0.0551 -5.9572 -0.8201 34 1 0.7315 -4.7785 0.3293 35 1 -1.3942 -4.9556 -4.2850 36 1 -1.6347 -5.3654 -2.5699 37 1 -1.6808 -3.6647 -3.0931 38 1 0.1211 -6.3122 -6.3260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700868490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:43 Heat of formation + Delta-G solvation = -25.871474 kcal Electronic energy + Delta-G solvation = -19791.782504 eV Core-core repulsion = 16826.298572 eV Total energy + Delta-G solvation = -2965.483932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54375 -40.30169 -37.12818 -34.96906 -34.63647 -33.89904 -31.59994 -29.49465 -27.91819 -27.48716 -27.29048 -24.12482 -23.15754 -22.28435 -19.95660 -18.53558 -18.00594 -17.78611 -17.36152 -16.96259 -16.15795 -16.08256 -15.64429 -15.13660 -14.57777 -14.35201 -14.07919 -13.99355 -13.82457 -13.67961 -13.48413 -13.38495 -13.06927 -12.97854 -12.76620 -12.66112 -12.58960 -12.19169 -12.16895 -12.10032 -11.19059 -10.80457 -10.57655 -10.46354 -10.34273 -9.67697 -9.31037 -8.14930 -6.31471 0.18102 0.40797 1.40062 1.42232 1.52021 1.81826 2.30607 2.47395 2.93277 3.12826 3.37229 3.72105 3.90393 3.97105 4.02648 4.15588 4.38927 4.45408 4.54383 4.62975 4.74440 4.77784 4.79488 4.79707 4.87367 4.91766 5.06208 5.09630 5.19162 5.25476 5.37627 5.48198 5.61495 5.67606 5.86176 6.05738 6.17188 6.76709 6.84228 7.11486 7.32420 7.49734 8.89401 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.004951 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.027734 B = 5653.560042 C = 5959.014951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.136 4.136 3 C -0.084 4.084 4 C -0.169 4.169 5 C 0.073 3.927 6 N -0.513 5.513 7 C 0.124 3.876 8 C -0.084 4.084 9 C 0.505 3.495 10 O -0.602 6.602 11 N -0.601 5.601 12 C 0.076 3.924 13 C 0.262 3.738 14 H 0.004 0.996 15 C -0.129 4.129 16 C -0.539 4.539 17 H 0.060 0.940 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.021 0.979 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 10.693 15.853 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.109 4.109 4 C -0.188 4.188 5 C -0.084 4.084 6 N -0.222 5.222 7 C -0.014 4.014 8 C -0.124 4.124 9 C 0.293 3.707 10 O -0.484 6.484 11 N -0.331 5.331 12 C -0.066 4.066 13 C 0.160 3.840 14 H 0.022 0.978 15 C -0.188 4.188 16 C -0.577 4.577 17 H 0.078 0.922 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.183 0.817 28 H 0.186 0.814 29 H 0.190 0.810 30 H 0.135 0.865 31 H 0.159 0.841 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.040 0.960 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.517 10.174 15.193 18.292 hybrid contribution 0.170 -0.188 -0.899 0.934 sum 0.687 9.986 14.294 17.450 Atomic orbital electron populations 1.20855 0.88916 1.04698 1.02366 1.20994 0.98818 0.93618 1.00378 1.21881 0.94619 0.98532 0.95893 1.22480 0.95583 1.00045 1.00678 1.23157 1.01254 0.87928 0.96104 1.67343 1.08590 1.33570 1.12649 1.20623 0.89778 0.94517 0.96472 1.20687 1.02900 0.95116 0.93714 1.20948 0.77364 0.80840 0.91540 1.90627 1.53499 1.56271 1.48032 1.48224 1.54610 1.21399 1.08908 1.21918 1.00214 0.96339 0.88158 1.18509 0.93452 0.93732 0.78338 0.97821 1.21840 0.96219 0.97876 1.02847 1.21596 1.34151 1.04151 0.97838 0.92205 1.25739 0.95691 1.01579 0.95501 1.70024 1.42394 1.39965 1.03327 0.85454 0.78860 0.79579 0.77112 1.18953 1.21168 1.19768 0.92423 0.88442 0.90100 0.81749 0.81376 0.80994 0.86523 0.84115 0.90889 0.91304 0.89252 0.91588 0.93263 0.95985 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 9.63 71.24 0.69 -1.71 16 2 C -0.14 -3.69 5.90 -19.77 -0.12 -3.80 16 3 C -0.08 -1.85 9.86 22.47 0.22 -1.63 16 4 C -0.17 -3.60 10.11 22.36 0.23 -3.37 16 5 C 0.07 1.96 11.18 84.69 0.95 2.90 16 6 N -0.51 -17.71 10.27 -183.88 -1.89 -19.60 16 7 C 0.12 4.04 5.27 42.54 0.22 4.26 16 8 C -0.08 -2.60 4.14 29.10 0.12 -2.48 16 9 C 0.50 21.79 7.67 87.66 0.67 22.46 16 10 O -0.60 -32.50 15.36 -3.04 -0.05 -32.54 16 11 N -0.60 -26.00 2.75 -826.80 -2.28 -28.28 16 12 C 0.08 2.36 9.24 127.77 1.18 3.54 16 13 C 0.26 14.02 2.64 44.25 0.12 14.14 16 14 H 0.00 0.25 6.90 -2.38 -0.02 0.23 16 15 C -0.13 -6.30 8.97 71.98 0.65 -5.66 16 16 C -0.54 -30.10 7.99 25.60 0.20 -29.90 16 17 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 18 C 0.01 0.80 5.30 84.65 0.45 1.25 16 19 N -0.92 -54.04 11.32 21.44 0.24 -53.80 16 20 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 25 H 0.10 1.44 8.10 -2.39 -0.02 1.42 16 26 H 0.08 1.52 5.95 -2.38 -0.01 1.51 16 27 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.12 3.29 7.40 -2.39 -0.02 3.27 16 31 H 0.14 3.16 5.91 -2.39 -0.01 3.15 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 2.33 7.02 -2.38 -0.02 2.32 16 34 H 0.09 2.14 6.44 -2.39 -0.02 2.13 16 35 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 36 H 0.05 2.15 7.67 -2.39 -0.02 2.14 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -78.06 314.15 4.69 -73.37 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.05 Total: 14.81 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.58 Total: 0.00 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.92 Total: -101.68 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.06 4.69 -73.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700868490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.501 kcal (2) G-P(sol) polarization free energy of solvation -78.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds