Wall clock time and date at job start Mon Mar 30 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47307 * 2 1 4 4 C 1.50700 * 109.47048 * 120.00282 * 2 1 3 5 5 H 1.07998 * 120.00103 * 120.00087 * 4 2 1 6 6 C 1.37885 * 119.99976 * 299.99625 * 4 2 1 7 7 N 1.31515 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00030 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47318 * 59.99785 * 8 6 4 10 10 H 1.48500 * 109.47168 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47093 * 300.00192 * 8 6 4 12 12 N 1.46897 * 109.46776 * 239.99816 * 2 1 3 13 13 C 1.46754 * 111.00424 * 294.57929 * 12 2 1 14 14 C 1.53418 * 108.61342 * 175.04104 * 13 12 2 15 15 O 1.43132 * 107.90706 * 296.79994 * 14 13 12 16 16 C 1.36153 * 116.66580 * 45.42938 * 15 14 13 17 17 C 1.38778 * 118.74444 * 165.27897 * 16 15 14 18 18 C 1.38174 * 120.20347 * 179.83690 * 17 16 15 19 19 C 1.38258 * 120.02597 * 359.42433 * 18 17 16 20 20 C 1.50702 * 119.94315 * 180.40202 * 19 18 17 21 21 N 1.46897 * 109.47276 * 90.00252 * 20 19 18 22 22 C 1.38072 * 120.11768 * 0.37988 * 19 18 17 23 23 C 1.38957 * 121.37650 * 344.72820 * 16 15 14 24 24 H 1.09001 * 109.46926 * 299.99671 * 1 2 3 25 25 H 1.09000 * 109.47230 * 59.99707 * 1 2 3 26 26 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99316 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.60928 * 55.30072 * 13 12 2 29 29 H 1.08994 * 109.75689 * 294.86673 * 13 12 2 30 30 H 1.09008 * 109.77194 * 177.19846 * 14 13 12 31 31 H 1.08996 * 109.77963 * 56.40759 * 14 13 12 32 32 H 1.08007 * 119.90334 * 359.57483 * 17 16 15 33 33 H 1.08002 * 119.99157 * 179.71017 * 18 17 16 34 34 H 1.09001 * 109.47219 * 210.00268 * 20 19 18 35 35 H 1.08999 * 109.46817 * 330.00139 * 20 19 18 36 36 H 1.00901 * 110.99957 * 180.02562 * 21 20 19 37 37 H 1.00903 * 110.99918 * 303.95596 * 21 20 19 38 38 H 1.08003 * 119.88056 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8075 -1.1192 4.0077 10 1 1.8269 -0.4200 5.2205 11 1 1.8280 -2.5199 4.0081 12 7 2.0196 -0.6925 -1.1994 13 6 1.6576 -2.1144 -1.1704 14 6 2.0833 -2.7553 -2.4977 15 8 1.3368 -2.1310 -3.5473 16 6 1.2479 -0.7729 -3.5095 17 6 0.8133 -0.1007 -4.6432 18 6 0.7086 1.2770 -4.6372 19 6 1.0258 1.9899 -3.4958 20 6 0.9023 3.4918 -3.4884 21 7 -0.4488 3.8699 -3.0530 22 6 1.4551 1.3282 -2.3625 23 6 1.5711 -0.0583 -2.3624 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7082 1.1608 3.4845 28 1 0.5796 -2.2150 -1.0447 29 1 2.1698 -2.6083 -0.3447 30 1 1.8680 -3.8237 -2.4772 31 1 3.1496 -2.5965 -2.6587 32 1 0.5602 -0.6559 -5.5344 33 1 0.3745 1.7970 -5.5229 34 1 1.6365 3.9134 -2.8019 35 1 1.0812 3.8760 -4.4926 36 1 -0.5570 4.8730 -3.0400 37 1 -1.1505 3.4383 -3.6356 38 1 1.7014 1.8889 -1.4729 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700868818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:11 Heat of formation + Delta-G solvation = 1.447486 kcal Electronic energy + Delta-G solvation = -20420.006556 eV Core-core repulsion = 17455.707263 eV Total energy + Delta-G solvation = -2964.299293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55191 -37.52769 -36.63070 -34.11696 -32.86197 -30.26752 -29.83866 -29.41467 -26.41749 -25.26461 -24.74324 -22.74218 -22.32425 -20.23671 -18.86831 -17.68982 -16.54331 -16.20152 -15.97372 -15.18266 -14.91632 -14.57123 -14.05226 -13.88896 -13.67783 -13.49111 -13.30019 -12.92400 -12.71722 -12.19286 -11.92821 -11.54297 -11.18448 -11.09907 -10.98020 -10.83844 -10.76263 -10.62176 -10.29301 -10.09497 -9.74191 -9.10108 -8.88669 -8.54808 -8.45582 -7.87484 -6.76038 -6.11044 -4.17806 1.85655 1.91311 3.26274 3.31519 3.33189 3.73801 4.12014 4.33012 4.70805 4.92799 5.13296 5.16855 5.22598 5.26949 5.41676 5.55348 5.60015 5.71896 5.73723 5.93660 6.07287 6.22800 6.35351 6.43081 6.59772 6.73314 6.76595 6.88371 6.98614 7.03312 7.14432 7.29548 7.43449 7.56299 7.63350 7.65587 7.82422 7.96668 8.20170 8.43925 8.84713 9.47500 10.95468 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.007270 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.067627 B = 3850.495182 C = 5015.784787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.217 3.783 3 H 0.052 0.948 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.482 5.482 13 C 0.024 3.976 14 C 0.055 3.945 15 O -0.324 6.324 16 C 0.069 3.931 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.095 4.095 20 C 0.110 3.890 21 N -0.842 5.842 22 C -0.102 4.102 23 C 0.078 3.922 24 H 0.092 0.908 25 H 0.020 0.980 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.338 0.662 37 H 0.340 0.660 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 0.577 -11.673 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.113 3.887 3 H 0.070 0.930 4 C -0.556 4.556 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.195 5.195 13 C -0.103 4.103 14 C -0.021 4.021 15 O -0.238 6.238 16 C 0.021 3.979 17 C -0.147 4.147 18 C -0.151 4.151 19 C -0.096 4.096 20 C -0.020 4.020 21 N -0.372 5.372 22 C -0.124 4.124 23 C -0.022 4.022 24 H 0.111 0.889 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.148 0.187 -10.855 10.858 hybrid contribution -0.388 -0.068 0.181 0.434 sum -0.536 0.120 -10.674 10.688 Atomic orbital electron populations 1.22370 0.99394 0.99373 1.01637 1.19497 0.90608 0.94791 0.83754 0.93020 1.21042 1.31803 1.13056 0.89677 0.91869 1.24909 0.94920 0.95022 0.99016 1.69882 1.36070 1.22590 1.23859 0.86543 0.79231 0.79596 0.81949 1.20149 1.21203 1.20266 1.59094 1.55371 1.02716 1.02368 1.22647 1.00730 0.89299 0.97643 1.23211 0.95694 0.97063 0.86133 1.86122 1.71018 1.16960 1.49715 1.18645 1.02773 0.82269 0.94191 1.20198 1.04631 0.93738 0.96145 1.20468 1.04034 0.92897 0.97748 1.19404 1.01843 0.94681 0.93696 1.20595 0.91442 0.91939 0.98064 1.58645 1.03890 1.13804 1.60862 1.20867 1.00933 0.92136 0.98432 1.19168 0.97707 0.93760 0.91594 0.88894 0.96080 0.95475 0.92646 0.92599 0.87785 0.87777 0.91477 0.86090 0.86740 0.90415 0.95295 0.84958 0.84798 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.36 37.16 0.31 -3.85 16 2 C 0.22 5.38 1.96 -68.87 -0.13 5.24 16 3 H 0.05 1.40 6.18 -51.93 -0.32 1.08 16 4 C -0.52 -13.69 7.98 -34.44 -0.27 -13.97 16 5 H 0.06 1.64 6.32 -52.49 -0.33 1.31 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.48 -10.64 4.67 -164.61 -0.77 -11.41 16 13 C 0.02 0.46 5.03 -3.69 -0.02 0.44 16 14 C 0.05 0.89 7.26 37.37 0.27 1.16 16 15 O -0.32 -5.92 10.40 -20.23 -0.21 -6.13 16 16 C 0.07 1.31 6.47 -39.12 -0.25 1.06 16 17 C -0.13 -2.11 9.94 -39.41 -0.39 -2.50 16 18 C -0.13 -1.99 9.70 -39.60 -0.38 -2.37 16 19 C -0.09 -1.57 5.39 -104.67 -0.56 -2.13 16 20 C 0.11 1.49 6.91 -4.98 -0.03 1.46 16 21 N -0.84 -10.97 9.61 -11.41 -0.11 -11.08 16 22 C -0.10 -2.02 7.58 -39.31 -0.30 -2.32 16 23 C 0.08 1.62 4.84 -83.60 -0.40 1.22 16 24 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 25 H 0.02 0.49 6.37 -51.93 -0.33 0.16 16 26 H 0.03 0.65 6.44 -51.93 -0.33 0.31 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.06 1.16 6.25 -51.93 -0.32 0.83 16 29 H 0.10 2.03 6.38 -51.93 -0.33 1.70 16 30 H 0.10 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.34 3.50 9.08 -39.29 -0.36 3.15 16 37 H 0.34 4.06 8.99 -39.29 -0.35 3.71 16 38 H 0.13 2.85 6.03 -52.48 -0.32 2.53 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -29.09 298.53 -8.23 -37.32 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.98 Total: 10.04 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.27 Total: -14.94 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.25 Total: -46.51 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.21 Total: -6.13 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.09 -8.23 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700868818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.769 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds