Wall clock time and date at job start Mon Mar 30 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47307 * 2 1 4 4 C 1.50700 * 109.47048 * 120.00282 * 2 1 3 5 5 H 1.07998 * 120.00103 * 120.00087 * 4 2 1 6 6 C 1.37885 * 119.99976 * 299.99625 * 4 2 1 7 7 N 1.31515 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00030 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47318 * 59.99785 * 8 6 4 10 10 H 1.48500 * 109.47168 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47093 * 300.00192 * 8 6 4 12 12 N 1.46897 * 109.46776 * 239.99816 * 2 1 3 13 13 C 1.46754 * 111.00424 * 294.57929 * 12 2 1 14 14 C 1.53418 * 108.61342 * 175.04104 * 13 12 2 15 15 O 1.43132 * 107.90706 * 296.79994 * 14 13 12 16 16 C 1.36153 * 116.66580 * 45.42938 * 15 14 13 17 17 C 1.38778 * 118.74444 * 165.27897 * 16 15 14 18 18 C 1.38174 * 120.20347 * 179.83690 * 17 16 15 19 19 C 1.38258 * 120.02597 * 359.42433 * 18 17 16 20 20 C 1.50702 * 119.94315 * 180.40202 * 19 18 17 21 21 N 1.46897 * 109.47276 * 90.00252 * 20 19 18 22 22 C 1.38072 * 120.11768 * 0.37988 * 19 18 17 23 23 C 1.38957 * 121.37650 * 344.72820 * 16 15 14 24 24 H 1.09001 * 109.46926 * 299.99671 * 1 2 3 25 25 H 1.09000 * 109.47230 * 59.99707 * 1 2 3 26 26 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99316 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.60928 * 55.30072 * 13 12 2 29 29 H 1.08994 * 109.75689 * 294.86673 * 13 12 2 30 30 H 1.09008 * 109.77194 * 177.19846 * 14 13 12 31 31 H 1.08996 * 109.77963 * 56.40759 * 14 13 12 32 32 H 1.08007 * 119.90334 * 359.57483 * 17 16 15 33 33 H 1.08002 * 119.99157 * 179.71017 * 18 17 16 34 34 H 1.09001 * 109.47219 * 210.00268 * 20 19 18 35 35 H 1.08999 * 109.46817 * 330.00139 * 20 19 18 36 36 H 1.00901 * 110.99957 * 180.02562 * 21 20 19 37 37 H 1.00903 * 110.99918 * 303.95596 * 21 20 19 38 38 H 1.08003 * 119.88056 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8075 -1.1192 4.0077 10 1 1.8269 -0.4200 5.2205 11 1 1.8280 -2.5199 4.0081 12 7 2.0196 -0.6925 -1.1994 13 6 1.6576 -2.1144 -1.1704 14 6 2.0833 -2.7553 -2.4977 15 8 1.3368 -2.1310 -3.5473 16 6 1.2479 -0.7729 -3.5095 17 6 0.8133 -0.1007 -4.6432 18 6 0.7086 1.2770 -4.6372 19 6 1.0258 1.9899 -3.4958 20 6 0.9023 3.4918 -3.4884 21 7 -0.4488 3.8699 -3.0530 22 6 1.4551 1.3282 -2.3625 23 6 1.5711 -0.0583 -2.3624 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7082 1.1608 3.4845 28 1 0.5796 -2.2150 -1.0447 29 1 2.1698 -2.6083 -0.3447 30 1 1.8680 -3.8237 -2.4772 31 1 3.1496 -2.5965 -2.6587 32 1 0.5602 -0.6559 -5.5344 33 1 0.3745 1.7970 -5.5229 34 1 1.6365 3.9134 -2.8019 35 1 1.0812 3.8760 -4.4926 36 1 -0.5570 4.8730 -3.0400 37 1 -1.1505 3.4383 -3.6356 38 1 1.7014 1.8889 -1.4729 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700868818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:11 Heat of formation + Delta-G solvation = -19.386142 kcal Electronic energy + Delta-G solvation = -20420.909969 eV Core-core repulsion = 17455.707263 eV Total energy + Delta-G solvation = -2965.202707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.02056 -38.84507 -38.27568 -35.30060 -34.79188 -31.71988 -31.33271 -31.04548 -27.97646 -27.29393 -26.07104 -24.18623 -23.76808 -21.92007 -20.33751 -19.18974 -18.21806 -17.78482 -17.31081 -16.75043 -16.53771 -15.81467 -15.63707 -15.32308 -15.09769 -14.94448 -14.67454 -14.46389 -14.42995 -13.62036 -13.43596 -13.22721 -13.03147 -12.73548 -12.62299 -12.50112 -12.38331 -12.20954 -12.05220 -11.73110 -11.32858 -11.00384 -10.64486 -10.44298 -9.54866 -9.26238 -8.31999 -8.16527 -6.30563 0.47885 0.51587 1.41896 1.43436 1.51103 2.35410 2.41786 2.75652 3.10988 3.19858 3.73192 3.83542 3.91412 4.05176 4.15720 4.24397 4.31338 4.45721 4.53665 4.61424 4.66962 4.73991 4.77440 4.85744 4.90292 5.01073 5.08777 5.27240 5.31337 5.45043 5.60678 5.68365 5.75006 5.90071 6.04714 6.26994 6.28995 6.38082 6.69152 6.70574 6.79806 7.38634 8.89515 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.007270 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.067627 B = 3850.495182 C = 5015.784787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.228 3.772 3 H 0.017 0.983 4 C -0.532 4.532 5 H 0.065 0.935 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.495 5.495 13 C 0.023 3.977 14 C 0.062 3.938 15 O -0.327 6.327 16 C 0.054 3.946 17 C -0.125 4.125 18 C -0.114 4.114 19 C -0.094 4.094 20 C 0.112 3.888 21 N -0.859 5.859 22 C -0.124 4.124 23 C 0.047 3.953 24 H 0.067 0.933 25 H 0.021 0.979 26 H 0.025 0.975 27 H 0.264 0.736 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.353 0.647 37 H 0.347 0.653 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 -0.060 -13.699 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.123 3.877 3 H 0.035 0.965 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.209 5.209 13 C -0.104 4.104 14 C -0.013 4.013 15 O -0.241 6.241 16 C 0.007 3.993 17 C -0.144 4.144 18 C -0.133 4.133 19 C -0.095 4.095 20 C -0.018 4.018 21 N -0.391 5.391 22 C -0.145 4.145 23 C -0.053 4.053 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.161 0.839 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.290 -0.446 -12.914 12.925 hybrid contribution -0.376 0.208 0.702 0.823 sum -0.666 -0.238 -12.212 12.232 Atomic orbital electron populations 1.22110 0.99625 0.98672 1.00254 1.19122 0.90197 0.93283 0.85087 0.96506 1.21354 1.31823 1.13200 0.90614 0.91683 1.25728 0.95040 0.95671 1.01962 1.70025 1.37100 1.23900 1.24402 0.85516 0.78705 0.78710 0.78141 1.19674 1.20994 1.19300 1.59034 1.56242 1.03660 1.01931 1.22674 0.99594 0.88367 0.99738 1.23354 0.95778 0.98576 0.83606 1.86108 1.71376 1.16602 1.50055 1.18940 1.03248 0.82693 0.94447 1.20651 1.03126 0.94499 0.96144 1.20934 1.01534 0.92540 0.98310 1.19747 1.00405 0.96367 0.93009 1.20572 0.91581 0.89971 0.99664 1.58562 1.03788 1.15254 1.61507 1.20798 1.02833 0.92086 0.98831 1.19315 0.99960 0.94243 0.91753 0.91460 0.95979 0.95620 0.92711 0.94323 0.88279 0.83855 0.90994 0.83166 0.82415 0.91619 0.91923 0.83229 0.83946 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.63 8.36 71.98 0.60 -7.03 16 2 C 0.23 11.89 1.96 44.17 0.09 11.98 16 3 H 0.02 1.00 6.18 -2.39 -0.01 0.99 16 4 C -0.53 -29.05 7.98 25.60 0.20 -28.84 16 5 H 0.07 3.44 6.32 -2.91 -0.02 3.43 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -52.71 11.32 21.45 0.24 -52.47 16 8 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 N -0.49 -22.57 4.67 -674.70 -3.15 -25.72 16 13 C 0.02 0.91 5.03 86.47 0.44 1.34 16 14 C 0.06 1.93 7.26 72.12 0.52 2.45 16 15 O -0.33 -11.37 10.40 -95.29 -0.99 -12.36 16 16 C 0.05 2.00 6.47 22.57 0.15 2.14 16 17 C -0.13 -3.74 9.94 22.38 0.22 -3.52 16 18 C -0.11 -3.04 9.70 22.26 0.22 -2.83 16 19 C -0.09 -2.98 5.39 -19.90 -0.11 -3.09 16 20 C 0.11 2.86 6.91 85.56 0.59 3.45 16 21 N -0.86 -21.08 9.61 -190.01 -1.83 -22.91 16 22 C -0.12 -5.05 7.58 22.45 0.17 -4.88 16 23 C 0.05 1.97 4.84 38.25 0.19 2.16 16 24 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 25 H 0.02 1.08 6.37 -2.39 -0.02 1.06 16 26 H 0.02 1.27 6.44 -2.39 -0.02 1.26 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.04 1.63 6.25 -2.39 -0.01 1.62 16 29 H 0.10 3.92 6.38 -2.39 -0.02 3.91 16 30 H 0.14 3.30 8.14 -2.38 -0.02 3.28 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.07 1.82 8.08 -2.39 -0.02 1.81 16 35 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 36 H 0.35 6.75 9.08 -89.69 -0.81 5.93 16 37 H 0.35 7.52 8.99 -89.69 -0.81 6.71 16 38 H 0.10 4.70 6.03 -2.91 -0.02 4.68 16 Total: -1.00 -65.04 298.53 -0.50 -65.54 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.52 Total: 28.18 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 3.72 Total: -25.35 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -4.73 Total: -101.10 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.99 Total: -12.36 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -65.04 -0.50 -65.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700868818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.150 kcal (2) G-P(sol) polarization free energy of solvation -65.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds