Wall clock time and date at job start Mon Mar 30 2020 04:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47389 * 2 1 4 4 C 1.50697 * 109.47312 * 239.99264 * 2 1 3 5 5 H 1.07997 * 120.00751 * 245.60199 * 4 2 1 6 6 C 1.37880 * 119.99463 * 65.60230 * 4 2 1 7 7 N 1.31517 * 120.00477 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99739 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47211 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46823 * 120.00065 * 8 6 4 11 11 H 1.48494 * 109.47266 * 240.00030 * 8 6 4 12 12 N 1.46908 * 109.46659 * 119.99726 * 2 1 3 13 13 C 1.46757 * 110.99592 * 200.52464 * 12 2 1 14 14 C 1.53425 * 108.60576 * 285.45136 * 13 12 2 15 15 O 1.43137 * 107.89523 * 296.75524 * 14 13 12 16 16 C 1.36155 * 116.67127 * 45.37948 * 15 14 13 17 17 C 1.38777 * 118.74355 * 165.22754 * 16 15 14 18 18 C 1.38173 * 120.19936 * 179.55928 * 17 16 15 19 19 C 1.38255 * 120.02944 * 359.97438 * 18 17 16 20 20 C 1.50708 * 119.93863 * 180.02562 * 19 18 17 21 21 N 1.46894 * 109.47277 * 89.99696 * 20 19 18 22 22 C 1.38059 * 120.12132 * 0.09394 * 19 18 17 23 23 C 1.38965 * 121.37527 * 344.93883 * 16 15 14 24 24 H 1.09000 * 109.47387 * 174.47060 * 1 2 3 25 25 H 1.09009 * 109.46829 * 54.47425 * 1 2 3 26 26 H 1.08997 * 109.47328 * 294.48007 * 1 2 3 27 27 H 0.96999 * 119.99948 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.61277 * 45.19338 * 13 12 2 29 29 H 1.08999 * 109.60838 * 165.71441 * 13 12 2 30 30 H 1.09002 * 109.76976 * 177.15355 * 14 13 12 31 31 H 1.09000 * 109.77860 * 56.35718 * 14 13 12 32 32 H 1.08001 * 119.89639 * 359.53617 * 17 16 15 33 33 H 1.08008 * 119.98072 * 179.97438 * 18 17 16 34 34 H 1.08999 * 109.46933 * 209.99835 * 20 19 18 35 35 H 1.09004 * 109.47177 * 329.99761 * 20 19 18 36 36 H 1.00905 * 111.00114 * 56.04293 * 21 20 19 37 37 H 1.00893 * 111.00146 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.88359 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5766 -1.6383 -1.1338 6 6 1.7971 -0.1760 -2.4793 7 7 1.1339 0.9535 -2.5971 8 14 2.4204 -1.0564 -4.0045 9 1 3.1306 -2.2976 -3.6041 10 1 1.2720 -1.4041 -4.8794 11 1 3.3536 -0.1677 -4.7424 12 7 2.0196 -0.6925 1.1996 13 6 3.4046 -0.3105 1.4988 14 6 4.3319 -1.0037 0.4920 15 8 4.2129 -2.4170 0.6851 16 6 2.9512 -2.9117 0.8168 17 6 2.7548 -4.2800 0.6947 18 6 1.4884 -4.8154 0.8320 19 6 0.4119 -3.9879 1.0923 20 6 -0.9684 -4.5741 1.2422 21 7 -1.2046 -4.9164 2.6510 22 6 0.5989 -2.6254 1.2138 23 6 1.8702 -2.0774 1.0747 24 1 -0.3634 -1.0229 -0.0990 25 1 -0.3633 0.5972 -0.8365 26 1 -0.3634 0.4258 0.9352 27 1 0.9688 1.3297 -3.4758 28 1 3.5129 0.7707 1.4119 29 1 3.6609 -0.6264 2.5100 30 1 5.3623 -0.6932 0.6654 31 1 4.0337 -0.7438 -0.5237 32 1 3.5943 -4.9283 0.4914 33 1 1.3396 -5.8808 0.7358 34 1 -1.7101 -3.8449 0.9161 35 1 -1.0496 -5.4731 0.6312 36 1 -1.0715 -4.1123 3.2458 37 1 -2.1244 -5.3113 2.7778 38 1 -0.2447 -1.9826 1.4176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700868819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:13 Heat of formation + Delta-G solvation = 1.877526 kcal Electronic energy + Delta-G solvation = -20878.995554 eV Core-core repulsion = 17914.714909 eV Total energy + Delta-G solvation = -2964.280645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53316 -37.40872 -36.16603 -34.03787 -32.84312 -30.20601 -29.67195 -29.49230 -26.33962 -25.38439 -24.38913 -22.75252 -21.68300 -20.91481 -18.65989 -17.40418 -16.60478 -16.10091 -15.91536 -15.27773 -14.70922 -14.37004 -14.12086 -13.81660 -13.77174 -13.26900 -13.03615 -13.03280 -12.18651 -11.99903 -11.75425 -11.51317 -11.35542 -11.17161 -10.93052 -10.81178 -10.70770 -10.40503 -10.27260 -9.99210 -9.71633 -9.15691 -8.61037 -8.54371 -8.43798 -7.58010 -6.96404 -6.16659 -4.25192 2.04407 2.08958 3.19219 3.28674 3.35458 4.00987 4.29529 4.35088 4.68425 4.98902 5.13290 5.26175 5.32200 5.52197 5.65433 5.70280 5.75415 5.89554 5.91317 6.08607 6.16847 6.23006 6.57432 6.65128 6.71897 6.78907 6.87697 6.97391 7.04641 7.12260 7.26808 7.33152 7.37064 7.55138 7.61216 7.76739 7.89283 7.94912 8.12278 8.40026 8.80824 9.40940 10.86333 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.008647 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.887978 B = 3237.422030 C = 3519.768690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.209 3.791 3 H 0.048 0.952 4 C -0.547 4.547 5 H 0.067 0.933 6 C 0.073 3.927 7 N -0.882 5.882 8 Si 0.884 3.116 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.497 5.497 13 C 0.030 3.970 14 C 0.003 3.997 15 O -0.320 6.320 16 C 0.091 3.909 17 C -0.145 4.145 18 C -0.096 4.096 19 C -0.115 4.115 20 C 0.110 3.890 21 N -0.847 5.847 22 C -0.082 4.082 23 C 0.088 3.912 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.017 0.983 27 H 0.263 0.737 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.342 0.658 37 H 0.335 0.665 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 -5.866 6.825 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.105 3.895 3 H 0.065 0.935 4 C -0.585 4.585 5 H 0.085 0.915 6 C -0.131 4.131 7 N -0.520 5.520 8 Si 0.711 3.289 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.214 5.214 13 C -0.099 4.099 14 C -0.073 4.073 15 O -0.234 6.234 16 C 0.043 3.957 17 C -0.164 4.164 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.020 4.020 21 N -0.376 5.376 22 C -0.102 4.102 23 C -0.010 4.010 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.312 -6.098 6.979 9.273 hybrid contribution -0.037 0.353 -1.719 1.755 sum -0.348 -5.745 5.260 7.797 Atomic orbital electron populations 1.21915 0.97481 1.00333 0.99180 1.19511 0.92850 0.93802 0.83294 0.93459 1.21850 1.36475 1.08752 0.91452 0.91464 1.24889 0.94616 0.94672 0.98916 1.69921 1.39533 1.18584 1.23920 0.86638 0.78909 0.80121 0.83200 1.19473 1.20747 1.20838 1.59760 1.18645 1.03724 1.39272 1.22672 0.88094 1.01135 0.97985 1.24053 1.00450 0.78874 1.03909 1.86149 1.24453 1.24966 1.87831 1.18937 0.84911 0.93037 0.98798 1.20252 0.97545 0.92198 1.06398 1.20471 0.91278 0.98708 1.01109 1.19329 0.94724 0.93033 1.04559 1.20565 0.93154 0.98767 0.89477 1.58777 1.34910 1.37110 1.06798 1.20687 0.95842 0.93528 1.00160 1.18478 0.92976 0.89487 1.00067 0.94233 0.90698 0.96386 0.92739 0.89411 0.91219 0.89180 0.87008 0.86339 0.86497 0.94954 0.90769 0.84579 0.85260 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.19 37.16 0.30 -2.72 16 2 C 0.21 4.96 2.16 -68.86 -0.15 4.81 16 3 H 0.05 1.21 7.65 -51.93 -0.40 0.82 16 4 C -0.55 -14.07 5.54 -34.44 -0.19 -14.26 16 5 H 0.07 1.80 4.50 -52.49 -0.24 1.56 16 6 C 0.07 1.92 5.33 -17.82 -0.10 1.83 16 7 N -0.88 -23.96 11.79 55.43 0.65 -23.31 16 8 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 N -0.50 -10.59 4.59 -164.59 -0.76 -11.34 16 13 C 0.03 0.56 6.01 -3.68 -0.02 0.54 16 14 C 0.00 0.06 6.64 37.38 0.25 0.31 16 15 O -0.32 -6.69 10.38 -20.23 -0.21 -6.90 16 16 C 0.09 1.92 5.21 -39.11 -0.20 1.71 16 17 C -0.14 -2.74 9.94 -39.41 -0.39 -3.14 16 18 C -0.10 -1.67 9.70 -39.60 -0.38 -2.06 16 19 C -0.12 -2.00 5.39 -104.68 -0.56 -2.57 16 20 C 0.11 1.55 6.91 -4.97 -0.03 1.51 16 21 N -0.85 -10.34 9.61 -11.41 -0.11 -10.45 16 22 C -0.08 -1.60 7.79 -39.31 -0.31 -1.90 16 23 C 0.09 1.86 3.92 -83.59 -0.33 1.53 16 24 H 0.04 0.90 5.54 -51.93 -0.29 0.61 16 25 H 0.07 1.88 6.66 -51.92 -0.35 1.53 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.09 1.54 7.71 -51.93 -0.40 1.14 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.11 2.48 4.95 -51.93 -0.26 2.23 16 32 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.34 4.12 8.99 -39.29 -0.35 3.77 16 37 H 0.34 3.22 9.08 -39.30 -0.36 2.86 16 38 H 0.12 2.35 6.29 -52.49 -0.33 2.02 16 LS Contribution 296.33 15.07 4.47 4.47 Total: -1.00 -28.21 296.33 -8.14 -36.35 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.05 Total: 9.65 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.12 Total: -14.40 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.21 Total: -45.10 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.21 Total: -6.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.21 -8.14 -36.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700868819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.231 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds