Wall clock time and date at job start Mon Mar 30 2020 04:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47389 * 2 1 4 4 C 1.50697 * 109.47312 * 239.99264 * 2 1 3 5 5 H 1.07997 * 120.00751 * 245.60199 * 4 2 1 6 6 C 1.37880 * 119.99463 * 65.60230 * 4 2 1 7 7 N 1.31517 * 120.00477 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99739 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47211 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46823 * 120.00065 * 8 6 4 11 11 H 1.48494 * 109.47266 * 240.00030 * 8 6 4 12 12 N 1.46908 * 109.46659 * 119.99726 * 2 1 3 13 13 C 1.46757 * 110.99592 * 200.52464 * 12 2 1 14 14 C 1.53425 * 108.60576 * 285.45136 * 13 12 2 15 15 O 1.43137 * 107.89523 * 296.75524 * 14 13 12 16 16 C 1.36155 * 116.67127 * 45.37948 * 15 14 13 17 17 C 1.38777 * 118.74355 * 165.22754 * 16 15 14 18 18 C 1.38173 * 120.19936 * 179.55928 * 17 16 15 19 19 C 1.38255 * 120.02944 * 359.97438 * 18 17 16 20 20 C 1.50708 * 119.93863 * 180.02562 * 19 18 17 21 21 N 1.46894 * 109.47277 * 89.99696 * 20 19 18 22 22 C 1.38059 * 120.12132 * 0.09394 * 19 18 17 23 23 C 1.38965 * 121.37527 * 344.93883 * 16 15 14 24 24 H 1.09000 * 109.47387 * 174.47060 * 1 2 3 25 25 H 1.09009 * 109.46829 * 54.47425 * 1 2 3 26 26 H 1.08997 * 109.47328 * 294.48007 * 1 2 3 27 27 H 0.96999 * 119.99948 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.61277 * 45.19338 * 13 12 2 29 29 H 1.08999 * 109.60838 * 165.71441 * 13 12 2 30 30 H 1.09002 * 109.76976 * 177.15355 * 14 13 12 31 31 H 1.09000 * 109.77860 * 56.35718 * 14 13 12 32 32 H 1.08001 * 119.89639 * 359.53617 * 17 16 15 33 33 H 1.08008 * 119.98072 * 179.97438 * 18 17 16 34 34 H 1.08999 * 109.46933 * 209.99835 * 20 19 18 35 35 H 1.09004 * 109.47177 * 329.99761 * 20 19 18 36 36 H 1.00905 * 111.00114 * 56.04293 * 21 20 19 37 37 H 1.00893 * 111.00146 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.88359 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5766 -1.6383 -1.1338 6 6 1.7971 -0.1760 -2.4793 7 7 1.1339 0.9535 -2.5971 8 14 2.4204 -1.0564 -4.0045 9 1 3.1306 -2.2976 -3.6041 10 1 1.2720 -1.4041 -4.8794 11 1 3.3536 -0.1677 -4.7424 12 7 2.0196 -0.6925 1.1996 13 6 3.4046 -0.3105 1.4988 14 6 4.3319 -1.0037 0.4920 15 8 4.2129 -2.4170 0.6851 16 6 2.9512 -2.9117 0.8168 17 6 2.7548 -4.2800 0.6947 18 6 1.4884 -4.8154 0.8320 19 6 0.4119 -3.9879 1.0923 20 6 -0.9684 -4.5741 1.2422 21 7 -1.2046 -4.9164 2.6510 22 6 0.5989 -2.6254 1.2138 23 6 1.8702 -2.0774 1.0747 24 1 -0.3634 -1.0229 -0.0990 25 1 -0.3633 0.5972 -0.8365 26 1 -0.3634 0.4258 0.9352 27 1 0.9688 1.3297 -3.4758 28 1 3.5129 0.7707 1.4119 29 1 3.6609 -0.6264 2.5100 30 1 5.3623 -0.6932 0.6654 31 1 4.0337 -0.7438 -0.5237 32 1 3.5943 -4.9283 0.4914 33 1 1.3396 -5.8808 0.7358 34 1 -1.7101 -3.8449 0.9161 35 1 -1.0496 -5.4731 0.6312 36 1 -1.0715 -4.1123 3.2458 37 1 -2.1244 -5.3113 2.7778 38 1 -0.2447 -1.9826 1.4176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700868819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:13 Heat of formation + Delta-G solvation = -17.638989 kcal Electronic energy + Delta-G solvation = -20879.841853 eV Core-core repulsion = 17914.714909 eV Total energy + Delta-G solvation = -2965.126945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.08172 -38.81117 -37.83423 -35.21322 -34.74992 -31.81839 -31.19979 -31.01947 -27.90253 -27.31142 -25.74650 -24.19835 -23.26051 -22.56000 -20.18811 -19.07855 -18.29469 -17.59590 -17.47638 -16.69226 -16.36630 -15.67785 -15.60151 -15.37795 -15.22763 -14.88965 -14.72641 -14.39598 -13.69863 -13.44973 -13.30511 -13.23573 -13.11329 -12.87803 -12.64374 -12.52682 -12.29167 -12.13620 -11.93336 -11.64578 -11.41085 -11.02462 -10.55465 -10.03800 -9.58696 -9.09240 -8.58132 -8.14007 -6.29089 0.57391 0.60415 1.29913 1.35260 1.44750 2.34573 2.52353 2.85697 3.07554 3.21032 3.84108 3.94306 4.03635 4.13018 4.21938 4.30821 4.36155 4.54075 4.62117 4.71408 4.75297 4.82782 4.84626 5.03451 5.04798 5.12051 5.24530 5.31111 5.39003 5.53147 5.68271 5.75380 5.83349 5.95090 6.07803 6.21951 6.25387 6.38904 6.68569 6.75335 6.85104 7.38163 8.85153 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.008647 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.887978 B = 3237.422030 C = 3519.768690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.215 3.785 3 H 0.024 0.976 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.031 3.969 7 N -0.907 5.907 8 Si 0.934 3.066 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.499 5.499 13 C 0.028 3.972 14 C 0.005 3.995 15 O -0.329 6.329 16 C 0.064 3.936 17 C -0.153 4.153 18 C -0.093 4.093 19 C -0.112 4.112 20 C 0.114 3.886 21 N -0.847 5.847 22 C -0.093 4.093 23 C 0.063 3.937 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.033 0.967 35 H 0.089 0.911 36 H 0.343 0.657 37 H 0.353 0.647 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -7.518 7.371 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 H 0.042 0.958 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.546 5.546 8 Si 0.761 3.239 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.216 5.216 13 C -0.100 4.100 14 C -0.071 4.071 15 O -0.244 6.244 16 C 0.017 3.983 17 C -0.172 4.172 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.016 4.016 21 N -0.378 5.378 22 C -0.114 4.114 23 C -0.034 4.034 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.142 0.858 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.165 0.835 34 H 0.052 0.948 35 H 0.107 0.893 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.515 -7.766 7.537 10.834 hybrid contribution 0.020 0.788 -1.817 1.980 sum -0.495 -6.978 5.720 9.037 Atomic orbital electron populations 1.21737 0.97082 0.99902 0.98933 1.19277 0.93107 0.92581 0.83964 0.95848 1.21952 1.35560 1.08147 0.92241 0.92517 1.25455 0.95164 0.95339 1.01049 1.70006 1.40739 1.19576 1.24293 0.85862 0.78368 0.78888 0.80784 1.20262 1.20582 1.20259 1.59706 1.20103 1.04095 1.37741 1.22779 0.86910 1.01663 0.98650 1.24006 1.02448 0.78537 1.02079 1.86130 1.24659 1.25534 1.88051 1.19270 0.84965 0.94033 1.00074 1.20607 0.98933 0.91709 1.05966 1.20867 0.90510 1.00245 0.99534 1.19728 0.96576 0.92292 1.02696 1.20537 0.91030 0.99228 0.90806 1.58721 1.36323 1.37100 1.05632 1.20840 0.95245 0.94678 1.00596 1.18680 0.93867 0.89282 1.01602 0.94218 0.93064 0.94804 0.92745 0.88583 0.89585 0.85758 0.90285 0.84783 0.83475 0.94848 0.89285 0.84478 0.83336 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.19 71.98 0.59 -4.91 16 2 C 0.21 10.34 2.16 44.17 0.10 10.44 16 3 H 0.02 1.24 7.65 -2.39 -0.02 1.22 16 4 C -0.54 -28.10 5.54 25.60 0.14 -27.96 16 5 H 0.06 3.06 4.50 -2.91 -0.01 3.05 16 6 C 0.03 1.64 5.33 84.66 0.45 2.09 16 7 N -0.91 -49.97 11.79 21.45 0.25 -49.71 16 8 Si 0.93 43.28 29.54 68.60 2.03 45.30 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 N -0.50 -21.23 4.59 -674.63 -3.10 -24.33 16 13 C 0.03 1.04 6.01 86.47 0.52 1.56 16 14 C 0.01 0.20 6.64 72.12 0.48 0.68 16 15 O -0.33 -13.56 10.38 -95.31 -0.99 -14.55 16 16 C 0.06 2.65 5.21 22.57 0.12 2.77 16 17 C -0.15 -5.55 9.94 22.38 0.22 -5.33 16 18 C -0.09 -2.97 9.70 22.26 0.22 -2.76 16 19 C -0.11 -3.65 5.39 -19.90 -0.11 -3.76 16 20 C 0.11 2.88 6.91 85.56 0.59 3.47 16 21 N -0.85 -18.24 9.61 -190.00 -1.83 -20.07 16 22 C -0.09 -3.55 7.79 22.44 0.17 -3.38 16 23 C 0.06 2.64 3.92 38.25 0.15 2.79 16 24 H 0.04 1.80 5.54 -2.39 -0.01 1.79 16 25 H 0.05 2.61 6.66 -2.38 -0.02 2.59 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.10 3.33 7.71 -2.38 -0.02 3.32 16 29 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.08 3.55 4.95 -2.39 -0.01 3.54 16 32 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.03 0.84 8.08 -2.39 -0.02 0.82 16 35 H 0.09 2.00 8.08 -2.38 -0.02 1.99 16 36 H 0.34 7.45 8.99 -89.69 -0.81 6.65 16 37 H 0.35 5.68 9.08 -89.70 -0.81 4.86 16 38 H 0.12 4.56 6.29 -2.91 -0.02 4.54 16 Total: -1.00 -59.85 296.33 -0.52 -60.37 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.52 Total: 27.28 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 3.64 Total: -24.29 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -4.67 Total: -94.11 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.99 Total: -14.55 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -59.85 -0.52 -60.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700868819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.728 kcal (2) G-P(sol) polarization free energy of solvation -59.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds