Wall clock time and date at job start Mon Mar 30 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47274 * 2 1 4 4 N 1.46503 * 109.47361 * 179.97438 * 3 2 1 5 5 C 1.37093 * 119.99664 * 264.48749 * 4 3 2 6 6 H 1.08008 * 119.99643 * 138.94879 * 5 4 3 7 7 C 1.38947 * 120.00631 * 318.94934 * 5 4 3 8 8 N 1.31409 * 119.99534 * 341.77539 * 7 5 4 9 9 Si 1.86791 * 120.00321 * 161.77766 * 7 5 4 10 10 H 1.48498 * 109.47315 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.47508 * 210.00221 * 9 7 5 12 12 H 1.48503 * 109.47349 * 330.00151 * 9 7 5 13 13 C 1.34774 * 119.99664 * 84.76527 * 4 3 2 14 14 O 1.21295 * 119.99945 * 179.72832 * 13 4 3 15 15 C 1.50704 * 120.00450 * 359.72095 * 13 4 3 16 16 C 1.50697 * 109.47204 * 180.02562 * 15 13 4 17 17 N 1.31886 * 119.61251 * 90.00551 * 16 15 13 18 18 C 1.31859 * 121.72059 * 179.97438 * 17 16 15 19 19 C 1.38222 * 120.76558 * 359.97438 * 18 17 16 20 20 C 1.38627 * 119.16243 * 0.02562 * 19 18 17 21 21 C 1.38183 * 119.62068 * 269.72603 * 16 15 13 22 22 C 1.50700 * 120.41272 * 0.02889 * 21 16 15 23 23 H 1.08999 * 109.47377 * 300.00344 * 1 2 3 24 24 H 1.09003 * 109.46997 * 60.00446 * 1 2 3 25 25 H 1.08993 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47377 * 239.99656 * 2 1 3 27 27 H 1.09003 * 109.46997 * 119.99554 * 2 1 3 28 28 H 1.08999 * 109.47199 * 59.99548 * 3 2 1 29 29 H 1.09003 * 109.46744 * 299.99709 * 3 2 1 30 30 H 0.97006 * 119.99894 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47035 * 300.00378 * 15 13 4 32 32 H 1.08999 * 109.46584 * 60.00040 * 15 13 4 33 33 H 1.08005 * 119.61604 * 179.97438 * 18 17 16 34 34 H 1.08004 * 120.41815 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.78951 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.47419 * 90.00129 * 22 21 16 37 37 H 1.09007 * 109.46647 * 209.99497 * 22 21 16 38 38 H 1.08996 * 109.47405 * 329.99501 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.5568 1.1827 6 1 5.0708 0.9564 1.3566 7 6 3.7511 2.4449 2.1570 8 7 2.9252 3.4156 1.8371 9 14 4.3349 2.2589 3.9216 10 1 5.5786 3.0463 4.1171 11 1 3.2841 2.7557 4.8458 12 1 4.6063 0.8266 4.2049 13 6 4.1793 1.3359 -1.1614 14 8 5.3923 1.3409 -1.1614 15 6 3.4264 1.2103 -2.4608 16 6 4.4062 1.1063 -3.6011 17 7 4.8341 -0.0802 -3.9865 18 6 5.6907 -0.2194 -4.9793 19 6 6.1733 0.8845 -5.6568 20 6 5.7461 2.1484 -5.2800 21 6 4.8413 2.2547 -4.2346 22 6 4.3427 3.6060 -3.7914 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 2.6185 4.0355 2.5173 31 1 2.8035 0.3162 -2.4348 32 1 2.7961 2.0883 -2.6018 33 1 6.0189 -1.2075 -5.2665 34 1 6.8744 0.7640 -6.4694 35 1 6.1059 3.0289 -5.7915 36 1 5.0035 4.0023 -3.0205 37 1 4.3298 4.2859 -4.6434 38 1 3.3341 3.5075 -3.3900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700869210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:29 Heat of formation + Delta-G solvation = -8.456346 kcal Electronic energy + Delta-G solvation = -19993.538176 eV Core-core repulsion = 17028.809421 eV Total energy + Delta-G solvation = -2964.728755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.11987 -38.32664 -35.21283 -33.48039 -32.91747 -32.36701 -31.12295 -28.50048 -26.79615 -25.72349 -24.35417 -22.39527 -21.55423 -20.90440 -18.89205 -16.82057 -16.50979 -16.10796 -15.90928 -14.89991 -14.65415 -14.24972 -13.90608 -13.71544 -13.70400 -12.90510 -12.84796 -12.60029 -12.44421 -12.39197 -12.13070 -11.62002 -11.57835 -11.36706 -11.17651 -10.96067 -10.84366 -10.56798 -10.32158 -10.22963 -9.89508 -9.42791 -9.07162 -8.87945 -8.57041 -8.22415 -7.36836 -6.28994 -3.96573 1.44535 1.60931 3.19881 3.27822 3.33317 3.96449 4.04877 4.23726 4.63617 4.91833 5.02021 5.05619 5.11168 5.23286 5.31668 5.59455 5.62017 5.67176 5.76258 5.81978 5.88110 5.96918 6.00318 6.13008 6.16377 6.30324 6.36872 6.41394 6.44564 6.50573 6.58890 6.66127 6.94174 7.05774 7.26860 7.61811 8.33898 8.39134 8.56682 9.24368 9.43706 10.07214 10.76159 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.006103 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.892035 B = 4586.983362 C = 5112.740412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C 0.109 3.891 4 N -0.443 5.443 5 C -0.305 4.305 6 H 0.086 0.914 7 C 0.039 3.961 8 N -0.873 5.873 9 Si 0.916 3.084 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.475 3.525 14 O -0.573 6.573 15 C -0.098 4.098 16 C 0.169 3.831 17 N -0.475 5.475 18 C 0.091 3.909 19 C -0.183 4.183 20 C -0.080 4.080 21 C -0.123 4.123 22 C -0.112 4.112 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.047 0.953 30 H 0.266 0.734 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 -1.892 -10.682 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C -0.015 4.015 4 N -0.162 5.162 5 C -0.433 4.433 6 H 0.104 0.896 7 C -0.165 4.165 8 N -0.510 5.510 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.262 3.738 14 O -0.456 6.456 15 C -0.138 4.138 16 C 0.031 3.969 17 N -0.183 5.183 18 C -0.066 4.066 19 C -0.203 4.203 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.169 4.169 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.737 -2.476 -10.127 10.779 hybrid contribution 0.554 0.725 0.397 0.995 sum -2.183 -1.750 -9.730 10.124 Atomic orbital electron populations 1.21678 0.96360 1.00701 1.01507 1.22013 0.94868 0.99375 1.01913 1.21540 0.82297 0.94254 1.03416 1.43397 1.04362 1.63834 1.04641 1.19343 1.11857 1.21152 0.90959 0.89626 1.25393 0.97093 0.93581 1.00461 1.69923 1.33635 1.13504 1.33986 0.86109 0.78401 0.78881 0.82353 1.20348 1.20845 1.19412 1.20015 0.87939 0.81705 0.84163 1.90538 1.14062 1.54277 1.86704 1.20769 0.97047 1.04102 0.91926 1.20570 0.94727 0.87802 0.93800 1.67426 1.11330 1.26790 1.12770 1.22607 0.93635 0.98716 0.91669 1.21986 1.02401 0.93697 1.02254 1.21360 0.95575 0.97679 0.95970 1.20667 0.98248 0.96905 0.96655 1.20804 1.02122 0.92501 1.01513 0.92772 0.93172 0.93444 0.92957 0.91665 0.87769 0.93498 0.92358 0.88577 0.88336 0.83303 0.85380 0.85313 0.90257 0.91840 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.14 -2.59 6.17 -26.73 -0.16 -2.76 16 3 C 0.11 2.34 4.69 -4.04 -0.02 2.32 16 4 N -0.44 -11.26 2.51 -114.81 -0.29 -11.55 16 5 C -0.31 -8.53 8.84 -14.94 -0.13 -8.66 16 6 H 0.09 2.53 7.82 -52.48 -0.41 2.12 16 7 C 0.04 1.03 4.95 -17.47 -0.09 0.94 16 8 N -0.87 -23.40 11.61 55.50 0.64 -22.75 16 9 Si 0.92 20.78 29.59 -169.99 -5.03 15.75 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.47 11.88 7.59 -10.98 -0.08 11.79 16 14 O -0.57 -16.61 15.95 5.54 0.09 -16.52 16 15 C -0.10 -1.93 4.20 -29.03 -0.12 -2.05 16 16 C 0.17 3.28 5.27 -82.59 -0.44 2.85 16 17 N -0.47 -9.15 10.27 -9.47 -0.10 -9.24 16 18 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 19 C -0.18 -2.50 10.11 -39.44 -0.40 -2.90 16 20 C -0.08 -1.16 9.86 -39.28 -0.39 -1.55 16 21 C -0.12 -2.10 5.90 -104.48 -0.62 -2.71 16 22 C -0.11 -1.71 9.62 36.01 0.35 -1.36 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.92 6.58 -51.93 -0.34 0.58 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.10 2.46 5.76 -51.93 -0.30 2.16 16 29 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.10 1.77 6.53 -51.93 -0.34 1.43 16 32 H 0.10 1.72 5.20 -51.93 -0.27 1.45 16 33 H 0.15 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 35 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.07 1.08 5.95 -51.93 -0.31 0.77 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -32.82 315.32 -7.11 -39.92 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.25 Total: 4.23 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.93 Total: -4.60 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.26 Total: -43.54 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.82 -7.11 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700869210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.469 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds