Wall clock time and date at job start Mon Mar 30 2020 04:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47274 * 2 1 4 4 N 1.46503 * 109.47361 * 179.97438 * 3 2 1 5 5 C 1.37093 * 119.99664 * 264.48749 * 4 3 2 6 6 H 1.08008 * 119.99643 * 138.94879 * 5 4 3 7 7 C 1.38947 * 120.00631 * 318.94934 * 5 4 3 8 8 N 1.31409 * 119.99534 * 341.77539 * 7 5 4 9 9 Si 1.86791 * 120.00321 * 161.77766 * 7 5 4 10 10 H 1.48498 * 109.47315 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.47508 * 210.00221 * 9 7 5 12 12 H 1.48503 * 109.47349 * 330.00151 * 9 7 5 13 13 C 1.34774 * 119.99664 * 84.76527 * 4 3 2 14 14 O 1.21295 * 119.99945 * 179.72832 * 13 4 3 15 15 C 1.50704 * 120.00450 * 359.72095 * 13 4 3 16 16 C 1.50697 * 109.47204 * 180.02562 * 15 13 4 17 17 N 1.31886 * 119.61251 * 90.00551 * 16 15 13 18 18 C 1.31859 * 121.72059 * 179.97438 * 17 16 15 19 19 C 1.38222 * 120.76558 * 359.97438 * 18 17 16 20 20 C 1.38627 * 119.16243 * 0.02562 * 19 18 17 21 21 C 1.38183 * 119.62068 * 269.72603 * 16 15 13 22 22 C 1.50700 * 120.41272 * 0.02889 * 21 16 15 23 23 H 1.08999 * 109.47377 * 300.00344 * 1 2 3 24 24 H 1.09003 * 109.46997 * 60.00446 * 1 2 3 25 25 H 1.08993 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47377 * 239.99656 * 2 1 3 27 27 H 1.09003 * 109.46997 * 119.99554 * 2 1 3 28 28 H 1.08999 * 109.47199 * 59.99548 * 3 2 1 29 29 H 1.09003 * 109.46744 * 299.99709 * 3 2 1 30 30 H 0.97006 * 119.99894 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47035 * 300.00378 * 15 13 4 32 32 H 1.08999 * 109.46584 * 60.00040 * 15 13 4 33 33 H 1.08005 * 119.61604 * 179.97438 * 18 17 16 34 34 H 1.08004 * 120.41815 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.78951 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.47419 * 90.00129 * 22 21 16 37 37 H 1.09007 * 109.46647 * 209.99497 * 22 21 16 38 38 H 1.08996 * 109.47405 * 329.99501 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.5568 1.1827 6 1 5.0708 0.9564 1.3566 7 6 3.7511 2.4449 2.1570 8 7 2.9252 3.4156 1.8371 9 14 4.3349 2.2589 3.9216 10 1 5.5786 3.0463 4.1171 11 1 3.2841 2.7557 4.8458 12 1 4.6063 0.8266 4.2049 13 6 4.1793 1.3359 -1.1614 14 8 5.3923 1.3409 -1.1614 15 6 3.4264 1.2103 -2.4608 16 6 4.4062 1.1063 -3.6011 17 7 4.8341 -0.0802 -3.9865 18 6 5.6907 -0.2194 -4.9793 19 6 6.1733 0.8845 -5.6568 20 6 5.7461 2.1484 -5.2800 21 6 4.8413 2.2547 -4.2346 22 6 4.3427 3.6060 -3.7914 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 2.6185 4.0355 2.5173 31 1 2.8035 0.3162 -2.4348 32 1 2.7961 2.0883 -2.6018 33 1 6.0189 -1.2075 -5.2665 34 1 6.8744 0.7640 -6.4694 35 1 6.1059 3.0289 -5.7915 36 1 5.0035 4.0023 -3.0205 37 1 4.3298 4.2859 -4.6434 38 1 3.3341 3.5075 -3.3900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700869210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:28 Heat of formation + Delta-G solvation = -28.810315 kcal Electronic energy + Delta-G solvation = -19994.420791 eV Core-core repulsion = 17028.809421 eV Total energy + Delta-G solvation = -2965.611370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45502 -40.12230 -37.09143 -34.86321 -34.50633 -33.75481 -32.96009 -29.98142 -28.09101 -27.37350 -26.14926 -23.71923 -22.83936 -22.41158 -20.69428 -18.79687 -17.91944 -17.71202 -17.28108 -16.78867 -16.11237 -15.69716 -15.58055 -15.36847 -15.14402 -14.34592 -14.17175 -13.97983 -13.91557 -13.66267 -13.42353 -13.35583 -13.23814 -13.00048 -12.76319 -12.64561 -12.22146 -12.12990 -12.07976 -11.97296 -11.49609 -10.87711 -10.66388 -10.37308 -10.31068 -9.64758 -9.37361 -8.33378 -6.09545 0.21873 0.42946 1.36708 1.39897 1.52324 2.06567 2.29362 2.77635 3.00750 3.20292 3.45291 3.78482 3.95199 4.04351 4.10266 4.16645 4.20916 4.35021 4.45274 4.52710 4.63039 4.63276 4.75709 4.77499 4.80295 4.89078 5.00559 5.15985 5.18608 5.26347 5.29987 5.40168 5.40867 5.47225 5.59474 5.88370 6.24772 6.56960 7.14224 7.19984 7.46400 8.09179 8.70226 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.006103 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.892035 B = 4586.983362 C = 5112.740412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.454 5.454 5 C -0.341 4.341 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.887 5.887 9 Si 0.978 3.022 10 H -0.279 1.279 11 H -0.264 1.264 12 H -0.269 1.269 13 C 0.463 3.537 14 O -0.624 6.624 15 C -0.082 4.082 16 C 0.132 3.868 17 N -0.512 5.512 18 C 0.075 3.925 19 C -0.169 4.169 20 C -0.081 4.081 21 C -0.141 4.141 22 C -0.109 4.109 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.274 0.726 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 -1.652 -12.168 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C -0.013 4.013 4 N -0.173 5.173 5 C -0.470 4.470 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.525 5.525 9 Si 0.801 3.199 10 H -0.205 1.205 11 H -0.188 1.188 12 H -0.194 1.194 13 C 0.252 3.748 14 O -0.511 6.511 15 C -0.122 4.122 16 C -0.006 4.006 17 N -0.221 5.221 18 C -0.083 4.083 19 C -0.189 4.189 20 C -0.107 4.107 21 C -0.143 4.143 22 C -0.166 4.166 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.195 0.805 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.384 -2.231 -11.613 12.300 hybrid contribution 0.811 0.650 0.777 1.297 sum -2.573 -1.581 -10.836 11.249 Atomic orbital electron populations 1.21626 0.93040 1.02419 1.02333 1.21911 0.97629 0.96755 1.01064 1.21646 0.80048 0.96421 1.03158 1.43679 1.05923 1.63373 1.04279 1.19256 1.12298 1.22291 0.93104 0.92733 1.26084 0.96941 0.92767 1.03693 1.69975 1.33680 1.13491 1.35313 0.85197 0.78193 0.78705 0.77803 1.20531 1.18822 1.19400 1.20857 0.87725 0.80461 0.85733 1.90478 1.16421 1.56483 1.87704 1.20591 0.96996 1.05198 0.89422 1.20571 0.96303 0.89004 0.94677 1.67341 1.12972 1.27226 1.14528 1.23225 0.93011 1.00988 0.91044 1.22472 1.01570 0.92614 1.02203 1.21854 0.94293 0.99551 0.95002 1.20938 0.99092 0.96674 0.97549 1.20790 1.01100 0.92559 1.02124 0.92895 0.91406 0.91293 0.92632 0.93713 0.89911 0.91608 0.91673 0.87759 0.86506 0.80533 0.81020 0.81732 0.92986 0.88191 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.91 71.98 0.71 -2.99 16 2 C -0.13 -4.89 6.17 30.59 0.19 -4.70 16 3 C 0.11 4.80 4.69 86.38 0.40 5.21 16 4 N -0.45 -23.98 2.51 -635.52 -1.59 -25.57 16 5 C -0.34 -19.96 8.84 84.04 0.74 -19.22 16 6 H 0.05 3.45 7.82 -2.91 -0.02 3.43 16 7 C 0.01 0.44 4.95 84.93 0.42 0.86 16 8 N -0.89 -48.04 11.61 21.66 0.25 -47.79 16 9 Si 0.98 43.20 29.59 68.60 2.03 45.23 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 C 0.46 24.15 7.59 87.66 0.66 24.82 16 14 O -0.62 -38.13 15.95 -3.08 -0.05 -38.18 16 15 C -0.08 -3.29 4.20 29.10 0.12 -3.17 16 16 C 0.13 5.14 5.27 42.54 0.22 5.36 16 17 N -0.51 -19.70 10.27 -183.88 -1.89 -21.59 16 18 C 0.07 2.20 11.18 84.68 0.95 3.15 16 19 C -0.17 -4.08 10.11 22.36 0.23 -3.85 16 20 C -0.08 -2.13 9.86 22.47 0.22 -1.91 16 21 C -0.14 -4.69 5.90 -19.77 -0.12 -4.80 16 22 C -0.11 -3.24 9.62 71.24 0.69 -2.55 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.96 6.58 -2.39 -0.02 1.94 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 3.97 5.76 -2.39 -0.01 3.95 16 29 H 0.07 2.55 6.66 -2.39 -0.02 2.53 16 30 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 31 H 0.10 3.90 6.53 -2.39 -0.02 3.88 16 32 H 0.12 4.11 5.20 -2.39 -0.01 4.10 16 33 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 2.15 8.10 -2.38 -0.02 2.13 16 38 H 0.07 2.05 5.95 -2.39 -0.01 2.04 16 Total: -1.00 -75.20 315.32 5.25 -69.95 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 1.05 Total: 21.76 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.45 Total: -3.81 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -3.23 Total: -94.95 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.05 Total: -38.18 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.20 5.25 -69.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700869210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.144 kcal (2) G-P(sol) polarization free energy of solvation -75.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds