Wall clock time and date at job start Mon Mar 30 2020 04:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47406 * 2 1 4 4 N 1.46500 * 109.47201 * 119.99790 * 2 1 3 5 5 C 1.46491 * 120.00380 * 299.99992 * 4 2 1 6 6 C 1.50706 * 109.47261 * 270.00004 * 5 4 2 7 7 H 1.07999 * 119.99646 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99893 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00353 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99759 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47417 * 89.99563 * 10 8 6 12 12 H 1.48503 * 109.46913 * 209.99648 * 10 8 6 13 13 H 1.48500 * 109.47037 * 329.99292 * 10 8 6 14 14 C 1.34782 * 119.99720 * 119.99767 * 4 2 1 15 15 O 1.21279 * 119.99820 * 180.02562 * 14 4 2 16 16 C 1.50700 * 119.99918 * 0.02562 * 14 4 2 17 17 C 1.50707 * 109.46939 * 180.02562 * 16 14 4 18 18 C 1.38227 * 119.62059 * 125.01917 * 17 16 14 19 19 C 1.38627 * 119.15702 * 179.74122 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61137 * 304.99347 * 17 16 14 23 23 H 1.09007 * 109.47031 * 300.00120 * 1 2 3 24 24 H 1.09004 * 109.47544 * 59.99624 * 1 2 3 25 25 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47231 * 240.00395 * 2 1 3 27 27 H 1.09002 * 109.47414 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47014 * 299.99878 * 3 2 1 29 29 H 1.09000 * 109.47494 * 59.99904 * 3 2 1 30 30 H 1.09007 * 109.46848 * 29.99683 * 5 4 2 31 31 H 1.09002 * 109.47268 * 149.99840 * 5 4 2 32 32 H 0.97002 * 120.00522 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47643 * 59.99971 * 16 14 4 34 34 H 1.08999 * 109.47131 * 299.99485 * 16 14 4 35 35 H 1.07998 * 120.41916 * 359.95342 * 18 17 16 36 36 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 37 37 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 38 38 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5267 6 6 2.7033 0.8019 2.9830 7 1 3.5432 1.0357 2.3457 8 6 2.5818 1.4100 4.2144 9 7 1.5592 1.1248 4.9906 10 14 3.8690 2.6401 4.7796 11 1 3.4752 4.0040 4.3442 12 1 3.9718 2.6036 6.2606 13 1 5.1833 2.2903 4.1834 14 6 2.7932 -1.7864 1.0725 15 8 3.1971 -2.3584 2.0627 16 6 3.1576 -2.3010 -0.2963 17 6 4.0234 -3.5267 -0.1580 18 6 3.6489 -4.7016 -0.7825 19 6 4.4552 -5.8219 -0.6534 20 6 5.6080 -5.7209 0.1107 21 6 5.9180 -4.5126 0.7052 22 7 5.1296 -3.4658 0.5569 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.6904 0.2974 2.4843 31 1 1.6239 -1.0226 3.2291 32 1 1.4735 1.5530 5.8568 33 1 3.7028 -1.5302 -0.8410 34 1 2.2494 -2.5578 -0.8416 35 1 2.7415 -4.7453 -1.3665 36 1 4.1898 -6.7524 -1.1332 37 1 6.2577 -6.5745 0.2358 38 1 6.8161 -4.4245 1.2985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700873722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:16 Heat of formation + Delta-G solvation = -26.464818 kcal Electronic energy + Delta-G solvation = -19800.921667 eV Core-core repulsion = 16835.412006 eV Total energy + Delta-G solvation = -2965.509661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.35767 -40.28877 -37.46872 -34.98263 -33.87516 -33.16973 -32.35970 -30.24210 -28.39237 -27.88797 -25.04038 -24.36563 -23.23393 -22.43987 -19.59199 -18.59157 -18.21635 -17.62619 -17.16312 -16.84699 -16.40679 -16.07281 -15.64349 -15.10693 -14.79913 -14.43818 -14.22091 -14.08738 -13.95786 -13.75335 -13.32469 -13.21288 -12.91055 -12.81459 -12.73261 -12.57912 -12.42020 -12.18069 -12.07975 -11.62301 -11.49429 -10.71814 -10.60200 -10.57684 -10.17076 -9.82477 -9.35380 -8.18697 -6.30097 0.22927 0.50249 1.33528 1.36931 1.47048 1.93735 2.33417 2.46384 2.98724 3.10620 3.37865 3.78888 3.90302 4.05609 4.10183 4.28598 4.31140 4.34257 4.45694 4.48913 4.57971 4.77726 4.87374 4.90466 4.93836 5.06222 5.09250 5.15564 5.26777 5.27374 5.31963 5.47673 5.60911 5.66898 5.88285 5.94928 6.14216 6.76632 6.90244 7.24433 7.34030 7.60428 8.88417 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.005890 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.395004 B = 4752.697964 C = 5600.905962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 C -0.153 4.153 4 N -0.601 5.601 5 C 0.267 3.733 6 C -0.522 4.522 7 H 0.050 0.950 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.277 1.277 14 C 0.499 3.501 15 O -0.586 6.586 16 C -0.082 4.082 17 C 0.116 3.884 18 C -0.167 4.167 19 C -0.078 4.078 20 C -0.174 4.174 21 C 0.073 3.927 22 N -0.508 5.508 23 H 0.035 0.965 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.119 0.881 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.026 0.974 31 H -0.013 1.013 32 H 0.265 0.735 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.165 0.835 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 -9.660 -18.374 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 C -0.211 4.211 4 N -0.332 5.332 5 C 0.145 3.855 6 C -0.561 4.561 7 H 0.068 0.932 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.187 1.187 12 H -0.208 1.208 13 H -0.203 1.203 14 C 0.288 3.712 15 O -0.466 6.466 16 C -0.122 4.122 17 C -0.022 4.022 18 C -0.187 4.187 19 C -0.104 4.104 20 C -0.194 4.194 21 C -0.084 4.084 22 N -0.217 5.217 23 H 0.054 0.946 24 H 0.117 0.883 25 H 0.078 0.922 26 H 0.137 0.863 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.005 0.995 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.184 0.816 36 H 0.190 0.810 37 H 0.182 0.818 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.038 -9.103 -17.292 19.647 hybrid contribution 0.450 0.095 0.961 1.066 sum 2.488 -9.007 -16.331 18.815 Atomic orbital electron populations 1.22122 0.94149 1.02372 1.02718 1.21444 0.95293 0.93886 0.87205 1.22089 1.00455 0.96144 1.02387 1.48359 1.49653 1.27021 1.08217 1.18583 0.95106 0.92339 0.79447 1.21660 1.08822 1.23408 1.02219 0.93218 1.25785 0.97814 0.99168 0.96501 1.70050 1.31383 1.44646 1.11123 0.85532 0.79115 0.79548 0.77335 1.18658 1.20794 1.20254 1.21041 0.77941 0.80359 0.91884 1.90655 1.54266 1.59726 1.41990 1.20747 1.01054 0.96077 0.94353 1.20960 0.92360 0.95432 0.93441 1.22284 1.02262 0.92563 1.01590 1.22015 0.93036 0.99401 0.95913 1.22476 0.99236 0.99094 0.98562 1.23075 0.98429 0.89304 0.97597 1.67383 1.05740 1.34138 1.14448 0.94616 0.88330 0.92171 0.86323 0.94141 0.89017 0.93996 0.95577 0.99490 0.92663 0.86177 0.83743 0.81583 0.81018 0.81791 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 9.17 71.98 0.66 -3.54 16 2 C 0.12 3.81 3.17 44.99 0.14 3.95 16 3 C -0.15 -4.90 8.47 71.98 0.61 -4.29 16 4 N -0.60 -26.12 2.39 -802.15 -1.91 -28.03 16 5 C 0.27 14.83 4.60 85.64 0.39 15.23 16 6 C -0.52 -31.02 7.83 25.60 0.20 -30.82 16 7 H 0.05 2.97 7.63 -2.91 -0.02 2.94 16 8 C 0.01 0.32 5.46 84.65 0.46 0.78 16 9 N -0.93 -58.21 13.29 21.45 0.28 -57.93 16 10 Si 0.96 46.96 29.54 68.60 2.03 48.99 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 14 C 0.50 21.95 7.60 87.66 0.67 22.62 16 15 O -0.59 -32.81 14.91 -3.03 -0.05 -32.85 16 16 C -0.08 -2.42 4.41 29.10 0.13 -2.30 16 17 C 0.12 3.65 5.76 42.55 0.25 3.89 16 18 C -0.17 -3.74 9.71 22.36 0.22 -3.52 16 19 C -0.08 -1.46 10.18 22.47 0.23 -1.23 16 20 C -0.17 -3.68 10.11 22.36 0.23 -3.45 16 21 C 0.07 2.15 11.18 84.67 0.95 3.10 16 22 N -0.51 -18.98 9.22 -183.88 -1.70 -20.67 16 23 H 0.03 1.19 6.66 -2.38 -0.02 1.17 16 24 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.12 2.61 5.77 -2.39 -0.01 2.59 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.04 1.66 6.92 -2.39 -0.02 1.65 16 30 H 0.03 1.47 6.43 -2.38 -0.02 1.46 16 31 H -0.01 -0.85 7.42 -2.39 -0.02 -0.87 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.12 3.11 7.79 -2.39 -0.02 3.10 16 34 H 0.14 2.83 7.51 -2.39 -0.02 2.81 16 35 H 0.17 2.40 7.95 -2.91 -0.02 2.38 16 36 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -85.08 317.46 4.82 -80.26 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.04 Total: 9.82 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.13 Total: 0.42 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -3.33 Total: -106.63 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.05 Total: -32.85 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -85.08 4.82 -80.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.792 kcal (2) G-P(sol) polarization free energy of solvation -85.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds