Wall clock time and date at job start Mon Mar 30 2020 04:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47018 * 2 1 4 4 C 1.35535 * 125.68052 * 265.58699 * 3 2 1 5 5 C 1.35453 * 108.87376 * 179.97438 * 4 3 2 6 6 C 1.39836 * 107.86551 * 359.97438 * 5 4 3 7 7 C 1.37657 * 125.67746 * 85.27853 * 3 2 1 8 8 C 1.46681 * 126.23055 * 0.02562 * 7 3 2 9 9 O 1.21693 * 119.99877 * 5.74457 * 8 7 3 10 10 N 1.34774 * 119.99719 * 185.74595 * 8 7 3 11 11 C 1.47028 * 125.64814 * 354.67799 * 10 8 7 12 12 C 1.54332 * 107.26361 * 178.85243 * 11 10 8 13 13 C 1.55158 * 103.02147 * 338.14175 * 12 11 10 14 14 H 1.08998 * 111.03381 * 277.21901 * 13 12 11 15 15 C 1.50704 * 111.00165 * 153.38470 * 13 12 11 16 16 H 1.07993 * 120.00343 * 6.34742 * 15 13 12 17 17 C 1.37877 * 119.99406 * 186.35281 * 15 13 12 18 18 N 1.31512 * 120.00244 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99636 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47106 * 59.99999 * 19 17 15 21 21 H 1.48503 * 109.46895 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47342 * 299.99733 * 19 17 15 23 23 C 1.47422 * 125.64976 * 174.98957 * 10 8 7 24 24 H 1.09004 * 109.46952 * 55.01473 * 1 2 3 25 25 H 1.09001 * 109.47173 * 295.01836 * 1 2 3 26 26 H 1.08998 * 109.47695 * 175.01761 * 1 2 3 27 27 H 1.09000 * 109.47044 * 120.00083 * 2 1 3 28 28 H 1.09000 * 109.46541 * 240.00128 * 2 1 3 29 29 H 1.08000 * 125.56341 * 359.97020 * 4 3 2 30 30 H 1.08002 * 126.06783 * 179.97438 * 5 4 3 31 31 H 1.07994 * 126.45706 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.88280 * 298.39441 * 11 10 8 33 33 H 1.08999 * 109.88305 * 59.56274 * 11 10 8 34 34 H 1.08997 * 110.85068 * 219.66919 * 12 11 10 35 35 H 1.09003 * 110.66902 * 96.52518 * 12 11 10 36 36 H 0.97006 * 119.99569 * 180.02562 * 18 17 15 37 37 H 1.09000 * 110.36596 * 322.93116 * 23 10 8 38 38 H 1.09000 * 110.36695 * 85.24900 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 2.0983 -1.0977 5 6 2.7649 3.3310 -0.7072 6 6 2.6712 3.3916 0.6867 7 6 2.1992 2.1688 1.1144 8 6 1.9396 1.7774 2.5040 9 8 1.6244 0.6313 2.7646 10 7 2.0503 2.6872 3.4922 11 6 2.5269 4.0692 3.3351 12 6 2.4540 4.7394 4.7234 13 6 1.4149 3.8684 5.4779 14 1 0.3975 4.1755 5.2358 15 6 1.6503 3.9143 6.9658 16 1 2.3941 4.5821 7.3745 17 6 0.9160 3.1035 7.8051 18 7 0.0099 2.2906 7.3074 19 14 1.2082 3.1598 9.6493 20 1 0.9409 4.5317 10.1512 21 1 0.2978 2.2002 10.3242 22 1 2.6177 2.7928 9.9386 23 6 1.7195 2.4596 4.9107 24 1 -0.3633 0.5893 -0.8420 25 1 -0.3633 0.4346 0.9312 26 1 -0.3634 -1.0237 -0.0892 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.3206 1.7445 -2.1172 30 1 3.0995 4.1261 -1.3571 31 1 2.9190 4.2377 1.3104 32 1 3.5559 4.0678 2.9756 33 1 1.8874 4.6043 2.6332 34 1 2.1060 5.7689 4.6395 35 1 3.4232 4.7008 5.2206 36 1 -0.5069 1.7205 7.8980 37 1 0.8427 1.8179 4.9975 38 1 2.5681 2.0162 5.4316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701200016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:49 Heat of formation + Delta-G solvation = 16.698566 kcal Electronic energy + Delta-G solvation = -19943.289398 eV Core-core repulsion = 16979.651442 eV Total energy + Delta-G solvation = -2963.637956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22367 -38.79028 -36.60705 -34.12409 -32.95357 -30.79108 -29.33466 -29.06717 -27.80520 -24.97558 -23.68173 -22.97101 -20.75333 -20.54827 -19.57088 -18.67609 -16.79525 -16.52464 -15.78293 -15.24229 -14.91361 -14.53333 -14.40503 -14.20597 -13.63283 -13.30180 -12.72719 -12.61250 -12.35208 -12.25194 -12.14683 -11.94286 -11.75063 -11.62680 -11.18541 -11.12479 -10.93231 -10.57980 -10.47952 -9.86184 -9.39201 -9.27696 -9.03167 -8.60399 -8.51743 -8.11409 -7.76222 -6.09792 -4.15331 1.79789 2.84065 2.93452 3.29711 3.35398 3.36804 3.81640 3.84085 4.38718 4.75506 4.96308 5.08725 5.10347 5.24211 5.31300 5.48366 5.51068 5.54984 5.69409 5.70594 5.86449 5.94490 6.14710 6.18309 6.24412 6.38109 6.48662 6.75563 6.84389 6.93861 7.00203 7.11400 7.18221 7.38909 7.47987 7.68310 7.90040 8.26096 8.28658 8.76179 8.87780 9.50632 10.99520 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032366 B = 0.005064 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.907374 B = 5527.397249 C = 6201.402676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.410 5.410 4 C 0.002 3.998 5 C -0.212 4.212 6 C -0.161 4.161 7 C -0.034 4.034 8 C 0.589 3.411 9 O -0.560 6.560 10 N -0.600 5.600 11 C 0.096 3.904 12 C -0.131 4.131 13 C 0.046 3.954 14 H 0.039 0.961 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.123 3.877 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.163 0.837 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.264 0.736 37 H 0.084 0.916 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 0.347 -15.390 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.083 5.083 4 C -0.132 4.132 5 C -0.236 4.236 6 C -0.186 4.186 7 C -0.148 4.148 8 C 0.378 3.622 9 O -0.442 6.442 10 N -0.332 5.332 11 C -0.027 4.027 12 C -0.169 4.169 13 C 0.027 3.973 14 H 0.057 0.943 15 C -0.557 4.557 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.003 3.997 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.180 0.820 30 H 0.156 0.844 31 H 0.173 0.827 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.422 -0.838 -15.204 15.607 hybrid contribution 0.124 -0.021 0.828 0.837 sum 3.546 -0.859 -14.376 14.832 Atomic orbital electron populations 1.22074 0.94187 1.02677 1.03150 1.22026 0.95954 0.79852 1.04718 1.44062 1.47447 1.11581 1.05254 1.21906 1.06624 0.93281 0.91431 1.20804 1.10208 0.97339 0.95266 1.22003 1.04437 0.96732 0.95477 1.20299 1.13483 0.92876 0.88102 1.16632 0.78293 0.84527 0.82772 1.90737 1.50754 1.18612 1.84088 1.48561 1.62935 1.11767 1.09904 1.22395 0.97954 0.82908 0.99470 1.22784 1.01746 0.99013 0.93397 1.19843 0.94059 0.88903 0.94473 0.94334 1.20942 1.21300 1.23304 0.90172 0.92020 1.25043 0.94705 0.95088 0.99027 1.69934 1.22871 1.24084 1.35453 0.86598 0.78174 0.77885 0.85021 1.20156 1.21260 1.20151 1.22749 1.00328 1.01755 0.74863 0.92545 0.91233 0.90903 0.87389 0.89799 0.82013 0.84424 0.82721 0.92126 0.91715 0.91582 0.91426 0.92595 0.89790 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.10 1.23 6.21 -4.04 -0.03 1.21 16 3 N -0.41 -6.08 2.76 -112.87 -0.31 -6.39 16 4 C 0.00 0.03 11.37 -16.91 -0.19 -0.16 16 5 C -0.21 -2.71 10.81 -39.98 -0.43 -3.14 16 6 C -0.16 -2.43 9.32 -39.12 -0.36 -2.79 16 7 C -0.03 -0.59 6.86 -81.97 -0.56 -1.15 16 8 C 0.59 12.35 7.80 -12.85 -0.10 12.25 16 9 O -0.56 -13.11 15.01 5.20 0.08 -13.03 16 10 N -0.60 -12.64 3.33 -172.05 -0.57 -13.21 16 11 C 0.10 1.66 4.99 -3.06 -0.02 1.64 16 12 C -0.13 -2.50 6.39 -24.89 -0.16 -2.66 16 13 C 0.05 1.12 2.97 -89.62 -0.27 0.85 16 14 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 15 C -0.52 -13.67 8.55 -34.44 -0.29 -13.97 16 16 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 17 C 0.06 1.74 5.34 -17.82 -0.10 1.65 16 18 N -0.89 -25.23 12.06 55.43 0.67 -24.56 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.12 3.02 5.63 -2.53 -0.01 3.00 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.11 1.65 6.48 -51.93 -0.34 1.31 16 28 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.16 2.12 4.43 -52.49 -0.23 1.89 16 32 H 0.06 0.93 7.14 -51.93 -0.37 0.56 16 33 H 0.06 1.02 6.70 -51.93 -0.35 0.67 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 2.32 7.38 -51.93 -0.38 1.94 16 38 H 0.05 1.40 8.03 -51.93 -0.42 0.98 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -30.67 309.69 -8.06 -38.73 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.43 Total: 2.89 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.14 Total: -4.91 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.22 Total: -44.16 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.67 -8.06 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701200016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.427 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds