Wall clock time and date at job start Mon Mar 30 2020 04:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47018 * 2 1 4 4 C 1.35535 * 125.68052 * 265.58699 * 3 2 1 5 5 C 1.35453 * 108.87376 * 179.97438 * 4 3 2 6 6 C 1.39836 * 107.86551 * 359.97438 * 5 4 3 7 7 C 1.37657 * 125.67746 * 85.27853 * 3 2 1 8 8 C 1.46681 * 126.23055 * 0.02562 * 7 3 2 9 9 O 1.21693 * 119.99877 * 5.74457 * 8 7 3 10 10 N 1.34774 * 119.99719 * 185.74595 * 8 7 3 11 11 C 1.47028 * 125.64814 * 354.67799 * 10 8 7 12 12 C 1.54332 * 107.26361 * 178.85243 * 11 10 8 13 13 C 1.55158 * 103.02147 * 338.14175 * 12 11 10 14 14 H 1.08998 * 111.03381 * 277.21901 * 13 12 11 15 15 C 1.50704 * 111.00165 * 153.38470 * 13 12 11 16 16 H 1.07993 * 120.00343 * 6.34742 * 15 13 12 17 17 C 1.37877 * 119.99406 * 186.35281 * 15 13 12 18 18 N 1.31512 * 120.00244 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99636 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47106 * 59.99999 * 19 17 15 21 21 H 1.48503 * 109.46895 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47342 * 299.99733 * 19 17 15 23 23 C 1.47422 * 125.64976 * 174.98957 * 10 8 7 24 24 H 1.09004 * 109.46952 * 55.01473 * 1 2 3 25 25 H 1.09001 * 109.47173 * 295.01836 * 1 2 3 26 26 H 1.08998 * 109.47695 * 175.01761 * 1 2 3 27 27 H 1.09000 * 109.47044 * 120.00083 * 2 1 3 28 28 H 1.09000 * 109.46541 * 240.00128 * 2 1 3 29 29 H 1.08000 * 125.56341 * 359.97020 * 4 3 2 30 30 H 1.08002 * 126.06783 * 179.97438 * 5 4 3 31 31 H 1.07994 * 126.45706 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.88280 * 298.39441 * 11 10 8 33 33 H 1.08999 * 109.88305 * 59.56274 * 11 10 8 34 34 H 1.08997 * 110.85068 * 219.66919 * 12 11 10 35 35 H 1.09003 * 110.66902 * 96.52518 * 12 11 10 36 36 H 0.97006 * 119.99569 * 180.02562 * 18 17 15 37 37 H 1.09000 * 110.36596 * 322.93116 * 23 10 8 38 38 H 1.09000 * 110.36695 * 85.24900 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 2.0983 -1.0977 5 6 2.7649 3.3310 -0.7072 6 6 2.6712 3.3916 0.6867 7 6 2.1992 2.1688 1.1144 8 6 1.9396 1.7774 2.5040 9 8 1.6244 0.6313 2.7646 10 7 2.0503 2.6872 3.4922 11 6 2.5269 4.0692 3.3351 12 6 2.4540 4.7394 4.7234 13 6 1.4149 3.8684 5.4779 14 1 0.3975 4.1755 5.2358 15 6 1.6503 3.9143 6.9658 16 1 2.3941 4.5821 7.3745 17 6 0.9160 3.1035 7.8051 18 7 0.0099 2.2906 7.3074 19 14 1.2082 3.1598 9.6493 20 1 0.9409 4.5317 10.1512 21 1 0.2978 2.2002 10.3242 22 1 2.6177 2.7928 9.9386 23 6 1.7195 2.4596 4.9107 24 1 -0.3633 0.5893 -0.8420 25 1 -0.3633 0.4346 0.9312 26 1 -0.3634 -1.0237 -0.0892 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.3206 1.7445 -2.1172 30 1 3.0995 4.1261 -1.3571 31 1 2.9190 4.2377 1.3104 32 1 3.5559 4.0678 2.9756 33 1 1.8874 4.6043 2.6332 34 1 2.1060 5.7689 4.6395 35 1 3.4232 4.7008 5.2206 36 1 -0.5069 1.7205 7.8980 37 1 0.8427 1.8179 4.9975 38 1 2.5681 2.0162 5.4316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701200016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:49 Heat of formation + Delta-G solvation = -1.709389 kcal Electronic energy + Delta-G solvation = -19944.087627 eV Core-core repulsion = 16979.651442 eV Total energy + Delta-G solvation = -2964.436185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.37389 -40.37292 -38.29701 -35.34949 -34.74599 -32.52870 -30.64100 -30.18937 -29.44307 -26.86554 -25.02434 -24.26106 -22.15059 -21.85524 -21.21619 -19.96682 -18.56034 -18.07336 -17.23502 -16.94162 -16.36619 -16.13901 -15.79331 -15.38901 -14.85329 -14.67633 -14.34547 -14.26451 -13.74761 -13.69889 -13.36599 -13.30855 -13.09876 -12.94809 -12.88026 -12.75304 -12.47858 -12.17303 -12.14234 -11.59036 -11.11137 -11.08678 -10.92725 -10.58494 -9.70353 -9.58639 -9.08858 -8.17597 -6.30405 0.53720 1.43140 1.44847 1.52708 1.67788 1.90410 2.35968 2.40356 2.44984 3.15318 3.63415 3.80607 3.96727 4.08334 4.19784 4.28020 4.34393 4.37139 4.47454 4.53132 4.61195 4.68937 4.74713 4.86762 4.98609 5.11077 5.13886 5.20281 5.21649 5.31905 5.35141 5.50621 5.67141 5.84946 5.93007 6.04519 6.25231 6.42232 6.65637 6.81928 7.16626 7.39917 8.91154 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032366 B = 0.005064 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.907374 B = 5527.397249 C = 6201.402676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 N -0.417 5.417 4 C 0.026 3.974 5 C -0.218 4.218 6 C -0.150 4.150 7 C -0.085 4.085 8 C 0.579 3.421 9 O -0.603 6.603 10 N -0.610 5.610 11 C 0.099 3.901 12 C -0.120 4.120 13 C 0.038 3.962 14 H 0.009 0.991 15 C -0.530 4.530 16 H 0.071 0.929 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.961 3.039 20 H -0.264 1.264 21 H -0.290 1.290 22 H -0.269 1.269 23 C 0.141 3.859 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.208 0.792 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.261 0.739 37 H 0.037 0.963 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 1.979 -18.025 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.028 4.028 3 N -0.091 5.091 4 C -0.109 4.109 5 C -0.242 4.242 6 C -0.176 4.176 7 C -0.197 4.197 8 C 0.371 3.629 9 O -0.487 6.487 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.157 4.157 13 C 0.019 3.981 14 H 0.027 0.973 15 C -0.568 4.568 16 H 0.089 0.911 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.786 3.214 20 H -0.188 1.188 21 H -0.216 1.216 22 H -0.194 1.194 23 C 0.019 3.981 24 H 0.092 0.908 25 H 0.042 0.958 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.147 0.853 29 H 0.225 0.775 30 H 0.189 0.811 31 H 0.183 0.817 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.999 0.836 -17.847 18.553 hybrid contribution -0.361 -0.540 1.516 1.649 sum 4.638 0.296 -16.332 16.980 Atomic orbital electron populations 1.22014 0.94121 1.03894 1.01299 1.22117 0.96009 0.79459 1.05203 1.44293 1.47516 1.12075 1.05234 1.22753 1.03121 0.92673 0.92373 1.21229 1.10058 0.98543 0.94329 1.22284 1.02517 0.95733 0.97086 1.19894 1.18001 0.94959 0.86840 1.17297 0.77280 0.83876 0.84424 1.90697 1.52625 1.20396 1.85020 1.48568 1.63524 1.13524 1.08467 1.22594 0.99966 0.80688 0.98966 1.22717 1.00123 0.99502 0.93396 1.19764 0.94165 0.89821 0.94393 0.97260 1.21379 1.20995 1.22951 0.91506 0.91124 1.25916 0.94509 0.94794 1.03713 1.70109 1.24150 1.25130 1.36847 0.85556 0.78097 0.78213 0.79507 1.18840 1.21592 1.19403 1.22180 0.97318 1.01135 0.77495 0.90758 0.95837 0.88856 0.90791 0.85307 0.77499 0.81135 0.81665 0.89185 0.89574 0.88982 0.90863 0.92989 0.94432 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.06 16 2 C 0.09 2.30 6.21 86.38 0.54 2.83 16 3 N -0.42 -11.58 2.76 -511.01 -1.41 -12.99 16 4 C 0.03 0.52 11.37 83.48 0.95 1.47 16 5 C -0.22 -4.57 10.81 22.01 0.24 -4.33 16 6 C -0.15 -4.10 9.32 22.57 0.21 -3.89 16 7 C -0.08 -2.91 6.86 40.35 0.28 -2.63 16 8 C 0.58 25.43 7.80 86.45 0.67 26.11 16 9 O -0.60 -30.47 15.01 -4.32 -0.06 -30.54 16 10 N -0.61 -26.64 3.33 -816.48 -2.72 -29.35 16 11 C 0.10 3.31 4.99 86.73 0.43 3.75 16 12 C -0.12 -4.41 6.39 31.79 0.20 -4.21 16 13 C 0.04 1.89 2.97 -10.15 -0.03 1.86 16 14 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 15 C -0.53 -28.52 8.55 25.60 0.22 -28.30 16 16 H 0.07 3.59 7.79 -2.91 -0.02 3.56 16 17 C 0.01 0.56 5.34 84.65 0.45 1.01 16 18 N -0.92 -55.39 12.06 21.45 0.26 -55.13 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 C 0.14 7.36 5.63 86.85 0.49 7.85 16 24 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.02 0.77 8.11 -2.39 -0.02 0.75 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 2.36 6.48 -2.39 -0.02 2.35 16 28 H 0.13 1.99 8.13 -2.39 -0.02 1.97 16 29 H 0.21 2.16 8.06 -2.91 -0.02 2.13 16 30 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.17 3.98 4.43 -2.91 -0.01 3.97 16 32 H 0.09 2.51 7.14 -2.39 -0.02 2.49 16 33 H 0.09 2.52 6.70 -2.39 -0.02 2.50 16 34 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.07 2.62 8.03 -2.39 -0.02 2.60 16 36 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 37 H 0.04 2.27 7.38 -2.39 -0.02 2.25 16 38 H 0.03 1.76 8.03 -2.39 -0.02 1.74 16 Total: -1.00 -73.04 309.69 4.53 -68.51 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.05 Total: 15.51 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.39 Total: -1.55 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -3.87 Total: -97.47 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.06 Total: -30.54 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -73.04 4.53 -68.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701200016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.801 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds