Wall clock time and date at job start Mon Mar 30 2020 04:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47305 * 263.66724 * 3 2 1 5 5 C 1.37099 * 119.99861 * 88.01481 * 4 3 2 6 6 H 1.07999 * 120.00115 * 172.93349 * 5 4 3 7 7 C 1.38957 * 119.99881 * 352.93022 * 5 4 3 8 8 N 1.31404 * 119.99958 * 338.20623 * 7 5 4 9 9 Si 1.86800 * 119.99850 * 158.21045 * 7 5 4 10 10 H 1.48504 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47187 * 119.99872 * 9 7 5 12 12 H 1.48497 * 109.47010 * 240.00047 * 9 7 5 13 13 C 1.34777 * 120.00224 * 268.01509 * 4 3 2 14 14 O 1.21291 * 119.99676 * 3.49680 * 13 4 3 15 15 C 1.50697 * 119.99860 * 183.49210 * 13 4 3 16 16 C 1.54168 * 111.79863 * 298.99527 * 15 13 4 17 17 C 1.54844 * 104.32419 * 261.29859 * 16 15 13 18 18 C 1.54840 * 102.73308 * 321.81485 * 17 16 15 19 19 C 1.54157 * 104.32817 * 38.18575 * 18 17 16 20 20 H 1.08997 * 111.79527 * 98.70325 * 19 18 17 21 21 C 1.54320 * 109.65305 * 223.31209 * 19 18 17 22 22 N 1.48529 * 104.67590 * 137.83702 * 21 19 18 23 23 C 1.48530 * 104.21066 * 320.35762 * 22 21 19 24 24 H 4.40639 * 5.51500 * 179.97438 * 4 1 2 25 25 H 1.08994 * 109.47152 * 23.67290 * 3 2 1 26 26 H 1.08993 * 109.46508 * 143.66998 * 3 2 1 27 27 H 0.97006 * 120.00285 * 180.02562 * 8 7 5 28 28 H 1.09007 * 110.45947 * 20.00772 * 16 15 13 29 29 H 1.09005 * 110.46266 * 142.58782 * 16 15 13 30 30 H 1.09000 * 110.75448 * 203.50386 * 17 16 15 31 31 H 1.09001 * 110.91757 * 80.19913 * 17 16 15 32 32 H 1.09002 * 110.46333 * 279.47232 * 18 17 16 33 33 H 1.09004 * 110.56682 * 156.95212 * 18 17 16 34 34 H 1.09010 * 110.39052 * 256.63884 * 21 19 18 35 35 H 1.08998 * 110.39742 * 18.91624 * 21 19 18 36 36 H 1.00898 * 111.00091 * 200.80133 * 22 21 19 37 37 H 1.08996 * 110.39210 * 280.84406 * 23 22 21 38 38 H 1.08998 * 110.39571 * 158.44235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1532 1.3727 5 6 3.3246 -0.9533 2.1596 6 1 3.7908 -0.8532 3.1286 7 6 2.9174 -2.2036 1.7103 8 7 1.9977 -2.2988 0.7767 9 14 3.6776 -3.7490 2.4337 10 1 4.6820 -3.3726 3.4606 11 1 2.6154 -4.5768 3.0595 12 1 4.3400 -4.5261 1.3555 13 6 3.3966 1.3813 1.8622 14 8 3.1684 2.3639 1.1887 15 6 3.9731 1.5335 3.2462 16 6 3.0327 0.9592 4.3244 17 6 2.2887 2.1971 4.8826 18 6 3.3946 3.2807 4.9004 19 6 4.2048 3.0201 3.6151 20 1 3.9094 3.6900 2.8076 21 6 5.7135 3.1228 3.9227 22 7 6.3262 1.9892 3.1841 23 6 5.3628 0.8732 3.3645 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.9403 -0.4126 26 1 3.0089 0.8287 -0.6088 27 1 1.7131 -3.1716 0.4632 28 1 2.3261 0.2584 3.8797 29 1 3.6082 0.4732 5.1123 30 1 1.9203 2.0045 5.8902 31 1 1.4715 2.4899 4.2234 32 1 4.0278 3.1646 5.7801 33 1 2.9543 4.2776 4.8778 34 1 6.1112 4.0712 3.5612 35 1 5.8907 3.0210 4.9934 36 1 7.2290 1.7532 3.5680 37 1 5.4859 0.4206 4.3484 38 1 5.4963 0.1259 2.5823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702059579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:08 Heat of formation + Delta-G solvation = 39.952534 kcal Electronic energy + Delta-G solvation = -21049.090833 eV Core-core repulsion = 18086.461244 eV Total energy + Delta-G solvation = -2962.629589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19917 -37.50333 -35.04255 -34.16390 -31.87706 -31.59653 -29.99645 -28.01392 -26.23407 -25.16557 -24.67649 -21.60597 -20.61751 -19.95593 -18.46826 -17.68056 -16.73000 -15.76001 -15.46462 -15.06513 -14.40868 -14.27586 -14.13679 -13.62844 -13.41565 -13.27913 -12.44655 -12.24332 -11.95863 -11.87739 -11.62297 -11.43680 -11.10277 -10.85225 -10.75325 -10.53250 -10.39235 -10.34431 -10.17546 -10.06371 -10.00334 -9.33481 -9.23266 -8.61826 -8.32541 -8.15521 -7.94642 -6.37468 -3.88354 3.06491 3.18988 3.21027 3.76898 3.94744 4.14893 4.35678 4.63472 4.83624 4.88675 4.97536 5.16863 5.30175 5.53739 5.66122 5.73227 5.77147 5.80451 5.90078 6.00339 6.06648 6.15914 6.19394 6.34120 6.39519 6.42962 6.61819 6.68545 6.82264 6.87482 6.92386 7.02842 7.14481 7.25049 7.39986 7.64123 7.66235 8.33481 9.03792 9.06538 9.49010 9.89412 10.59944 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.009031 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.198343 B = 3099.784859 C = 3697.289924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.088 4.088 3 C 0.239 3.761 4 N -0.440 5.440 5 C -0.341 4.341 6 H 0.110 0.890 7 C 0.036 3.964 8 N -0.851 5.851 9 Si 0.912 3.088 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.279 1.279 13 C 0.484 3.516 14 O -0.599 6.599 15 C -0.055 4.055 16 C -0.114 4.114 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.084 4.084 20 H 0.102 0.898 21 C 0.043 3.957 22 N -0.665 5.665 23 C 0.049 3.951 24 H 0.195 0.805 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.268 0.732 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.328 0.672 37 H 0.040 0.960 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 3.544 6.897 8.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.090 4.090 3 C 0.116 3.884 4 N -0.157 5.157 5 C -0.468 4.468 6 H 0.128 0.872 7 C -0.169 4.169 8 N -0.488 5.488 9 Si 0.738 3.262 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.205 1.205 13 C 0.272 3.728 14 O -0.485 6.485 15 C -0.059 4.059 16 C -0.152 4.152 17 C -0.161 4.161 18 C -0.154 4.154 19 C -0.103 4.103 20 H 0.120 0.880 21 C -0.086 4.086 22 N -0.292 5.292 23 C -0.081 4.081 24 H 0.213 0.787 25 H 0.128 0.872 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.143 0.857 37 H 0.058 0.942 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.740 4.030 5.741 7.949 hybrid contribution 0.121 -1.412 1.405 1.996 sum 3.861 2.618 7.146 8.534 Atomic orbital electron populations 1.24136 0.95281 1.07970 1.02959 1.23148 0.94296 0.94004 0.97524 1.18242 0.84178 1.01478 0.84452 1.43656 1.55895 1.05135 1.11016 1.19837 1.39892 0.84481 1.02540 0.87228 1.25215 0.95228 0.99264 0.97207 1.70152 1.24359 1.24899 1.29404 0.86113 0.79260 0.81826 0.78991 1.19261 1.20922 1.20503 1.19513 0.82850 0.82823 0.87579 1.90502 1.59106 1.38217 1.60679 1.21580 0.94920 0.94956 0.94421 1.22602 0.98744 0.97666 0.96230 1.22504 0.97873 0.95515 1.00216 1.22442 0.97362 0.98812 0.96795 1.22488 0.93373 0.96618 0.97843 0.87967 1.23020 0.94900 0.95519 0.95209 1.63742 1.04612 1.05592 1.55276 1.23161 0.90465 0.93824 1.00609 0.78746 0.87205 0.91672 0.92051 0.88765 0.91895 0.92100 0.91534 0.92137 0.92058 0.90885 0.94669 0.85719 0.94228 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.60 19.25 29.55 0.57 -6.03 16 2 C -0.09 -2.21 11.43 -37.12 -0.42 -2.63 16 3 C 0.24 5.90 5.19 -6.83 -0.04 5.87 16 4 N -0.44 -10.85 2.57 -117.94 -0.30 -11.16 16 5 C -0.34 -8.14 6.64 -14.93 -0.10 -8.24 16 6 H 0.11 2.46 4.34 -52.49 -0.23 2.23 16 7 C 0.04 0.87 5.01 -17.47 -0.09 0.79 16 8 N -0.85 -21.45 8.86 55.50 0.49 -20.96 16 9 Si 0.91 18.75 29.61 -169.99 -5.03 13.72 16 10 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.48 11.69 6.50 -10.99 -0.07 11.62 16 14 O -0.60 -16.10 15.06 5.55 0.08 -16.02 16 15 C -0.06 -1.08 0.53 -153.35 -0.08 -1.16 16 16 C -0.11 -2.09 4.63 -25.15 -0.12 -2.20 16 17 C -0.12 -1.99 6.90 -24.79 -0.17 -2.16 16 18 C -0.12 -1.72 6.38 -25.16 -0.16 -1.88 16 19 C -0.08 -1.48 3.43 -88.32 -0.30 -1.79 16 20 H 0.10 2.09 6.77 -51.93 -0.35 1.73 16 21 C 0.04 0.65 7.02 -2.23 -0.02 0.63 16 22 N -0.66 -10.91 7.62 -109.77 -0.84 -11.75 16 23 C 0.05 0.87 5.36 -2.23 -0.01 0.86 16 24 H 0.20 3.72 7.80 -54.09 -0.42 3.30 16 25 H 0.11 2.73 6.23 -51.93 -0.32 2.41 16 26 H 0.07 1.59 7.41 -51.93 -0.38 1.20 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.09 1.99 6.14 -51.93 -0.32 1.67 16 29 H 0.06 1.03 7.25 -51.93 -0.38 0.65 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.79 7.25 -51.93 -0.38 0.41 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.04 0.46 7.25 -51.93 -0.38 0.09 16 36 H 0.33 4.42 8.92 -39.29 -0.35 4.07 16 37 H 0.04 0.64 7.25 -51.93 -0.38 0.26 16 38 H 0.10 2.00 6.52 -51.93 -0.34 1.66 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -28.66 297.33 -7.18 -35.83 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.05 Total: 12.17 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.01 Total: -6.32 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.65 Total: -43.87 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.66 -7.18 -35.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702059579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.787 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds