Wall clock time and date at job start Mon Mar 30 2020 04:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47305 * 263.66724 * 3 2 1 5 5 C 1.37099 * 119.99861 * 88.01481 * 4 3 2 6 6 H 1.07999 * 120.00115 * 172.93349 * 5 4 3 7 7 C 1.38957 * 119.99881 * 352.93022 * 5 4 3 8 8 N 1.31404 * 119.99958 * 338.20623 * 7 5 4 9 9 Si 1.86800 * 119.99850 * 158.21045 * 7 5 4 10 10 H 1.48504 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47187 * 119.99872 * 9 7 5 12 12 H 1.48497 * 109.47010 * 240.00047 * 9 7 5 13 13 C 1.34777 * 120.00224 * 268.01509 * 4 3 2 14 14 O 1.21291 * 119.99676 * 3.49680 * 13 4 3 15 15 C 1.50697 * 119.99860 * 183.49210 * 13 4 3 16 16 C 1.54168 * 111.79863 * 298.99527 * 15 13 4 17 17 C 1.54844 * 104.32419 * 261.29859 * 16 15 13 18 18 C 1.54840 * 102.73308 * 321.81485 * 17 16 15 19 19 C 1.54157 * 104.32817 * 38.18575 * 18 17 16 20 20 H 1.08997 * 111.79527 * 98.70325 * 19 18 17 21 21 C 1.54320 * 109.65305 * 223.31209 * 19 18 17 22 22 N 1.48529 * 104.67590 * 137.83702 * 21 19 18 23 23 C 1.48530 * 104.21066 * 320.35762 * 22 21 19 24 24 H 4.40639 * 5.51500 * 179.97438 * 4 1 2 25 25 H 1.08994 * 109.47152 * 23.67290 * 3 2 1 26 26 H 1.08993 * 109.46508 * 143.66998 * 3 2 1 27 27 H 0.97006 * 120.00285 * 180.02562 * 8 7 5 28 28 H 1.09007 * 110.45947 * 20.00772 * 16 15 13 29 29 H 1.09005 * 110.46266 * 142.58782 * 16 15 13 30 30 H 1.09000 * 110.75448 * 203.50386 * 17 16 15 31 31 H 1.09001 * 110.91757 * 80.19913 * 17 16 15 32 32 H 1.09002 * 110.46333 * 279.47232 * 18 17 16 33 33 H 1.09004 * 110.56682 * 156.95212 * 18 17 16 34 34 H 1.09010 * 110.39052 * 256.63884 * 21 19 18 35 35 H 1.08998 * 110.39742 * 18.91624 * 21 19 18 36 36 H 1.00898 * 111.00091 * 200.80133 * 22 21 19 37 37 H 1.08996 * 110.39210 * 280.84406 * 23 22 21 38 38 H 1.08998 * 110.39571 * 158.44235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1532 1.3727 5 6 3.3246 -0.9533 2.1596 6 1 3.7908 -0.8532 3.1286 7 6 2.9174 -2.2036 1.7103 8 7 1.9977 -2.2988 0.7767 9 14 3.6776 -3.7490 2.4337 10 1 4.6820 -3.3726 3.4606 11 1 2.6154 -4.5768 3.0595 12 1 4.3400 -4.5261 1.3555 13 6 3.3966 1.3813 1.8622 14 8 3.1684 2.3639 1.1887 15 6 3.9731 1.5335 3.2462 16 6 3.0327 0.9592 4.3244 17 6 2.2887 2.1971 4.8826 18 6 3.3946 3.2807 4.9004 19 6 4.2048 3.0201 3.6151 20 1 3.9094 3.6900 2.8076 21 6 5.7135 3.1228 3.9227 22 7 6.3262 1.9892 3.1841 23 6 5.3628 0.8732 3.3645 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.9403 -0.4126 26 1 3.0089 0.8287 -0.6088 27 1 1.7131 -3.1716 0.4632 28 1 2.3261 0.2584 3.8797 29 1 3.6082 0.4732 5.1123 30 1 1.9203 2.0045 5.8902 31 1 1.4715 2.4899 4.2234 32 1 4.0278 3.1646 5.7801 33 1 2.9543 4.2776 4.8778 34 1 6.1112 4.0712 3.5612 35 1 5.8907 3.0210 4.9934 36 1 7.2290 1.7532 3.5680 37 1 5.4859 0.4206 4.3484 38 1 5.4963 0.1259 2.5823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702059579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:07 Heat of formation + Delta-G solvation = 21.202264 kcal Electronic energy + Delta-G solvation = -21049.903906 eV Core-core repulsion = 18086.461244 eV Total energy + Delta-G solvation = -2963.442661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75131 -39.19503 -36.96709 -35.45141 -33.74156 -33.42415 -31.50288 -29.42172 -28.07408 -26.54004 -26.44589 -23.07738 -21.98736 -21.47345 -20.25265 -19.31439 -18.48602 -17.44068 -16.95251 -16.61475 -16.14711 -15.94747 -15.70415 -15.15157 -14.96280 -14.60379 -14.13612 -13.99186 -13.76572 -13.34389 -13.23367 -12.85748 -12.78142 -12.39787 -12.22834 -12.06052 -11.80536 -11.71876 -11.64064 -11.45534 -11.39384 -11.19630 -11.13175 -10.55162 -10.16654 -9.86797 -9.40282 -8.21472 -5.77934 1.41326 1.50496 1.61330 1.92848 2.13341 2.35612 2.43427 3.09869 3.20958 3.39231 3.51600 3.78238 3.95945 3.97109 4.23996 4.32471 4.42504 4.46911 4.54844 4.63067 4.69487 4.82360 4.87370 4.93386 5.01936 5.04118 5.13421 5.17608 5.22623 5.36137 5.40927 5.44559 5.54458 5.54961 5.78898 5.85261 6.45012 6.57172 7.14374 7.17332 7.61879 8.02370 8.76442 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.009031 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.198343 B = 3099.784859 C = 3697.289924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.135 4.135 3 C 0.241 3.759 4 N -0.447 5.447 5 C -0.347 4.347 6 H 0.125 0.875 7 C -0.007 4.007 8 N -0.879 5.879 9 Si 0.978 3.022 10 H -0.251 1.251 11 H -0.287 1.287 12 H -0.283 1.283 13 C 0.468 3.532 14 O -0.640 6.640 15 C -0.060 4.060 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.105 4.105 19 C -0.090 4.090 20 H 0.063 0.937 21 C 0.050 3.950 22 N -0.682 5.682 23 C 0.055 3.945 24 H 0.233 0.767 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.267 0.733 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.347 0.653 37 H 0.067 0.933 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 3.323 9.851 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.136 4.136 3 C 0.118 3.882 4 N -0.164 5.164 5 C -0.474 4.474 6 H 0.143 0.857 7 C -0.209 4.209 8 N -0.517 5.517 9 Si 0.802 3.198 10 H -0.174 1.174 11 H -0.213 1.213 12 H -0.209 1.209 13 C 0.258 3.742 14 O -0.528 6.528 15 C -0.063 4.063 16 C -0.149 4.149 17 C -0.159 4.159 18 C -0.142 4.142 19 C -0.109 4.109 20 H 0.082 0.918 21 C -0.079 4.079 22 N -0.312 5.312 23 C -0.074 4.074 24 H 0.250 0.750 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.085 0.915 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.719 3.808 8.711 10.614 hybrid contribution -0.247 -1.309 0.395 1.389 sum 4.472 2.499 9.106 10.448 Atomic orbital electron populations 1.25055 0.96297 1.06085 1.01169 1.23497 0.95081 0.95766 0.99296 1.18104 0.84687 1.00422 0.85014 1.43907 1.55622 1.05913 1.10936 1.20207 1.39762 0.84341 1.03073 0.85742 1.26040 0.95300 1.01855 0.97713 1.70275 1.25433 1.25250 1.30742 0.85092 0.78432 0.77839 0.78395 1.17435 1.21311 1.20898 1.20449 0.82437 0.82004 0.89303 1.90458 1.60761 1.39322 1.62299 1.21628 0.95962 0.97013 0.91734 1.22559 0.98166 0.97932 0.96260 1.22493 0.97395 0.94986 1.01042 1.22417 0.96764 0.98800 0.96262 1.22484 0.96012 0.94238 0.98200 0.91809 1.23019 0.92588 0.95265 0.96992 1.63635 1.05395 1.05481 1.56667 1.23005 0.89735 0.93697 1.01009 0.75010 0.88046 0.92782 0.92297 0.92341 0.89075 0.89008 0.94375 0.88847 0.91008 0.90184 0.91274 0.83605 0.91472 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.46 19.25 74.32 1.43 -11.03 16 2 C -0.13 -7.00 11.43 31.13 0.36 -6.64 16 3 C 0.24 12.54 5.19 84.57 0.44 12.98 16 4 N -0.45 -22.90 2.57 -645.44 -1.66 -24.56 16 5 C -0.35 -16.78 6.64 84.04 0.56 -16.22 16 6 H 0.13 5.50 4.34 -2.91 -0.01 5.48 16 7 C -0.01 -0.32 5.01 84.93 0.43 0.11 16 8 N -0.88 -45.21 8.86 21.66 0.19 -45.02 16 9 Si 0.98 38.10 29.61 68.60 2.03 40.14 16 10 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 11 H -0.29 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 13 C 0.47 23.39 6.50 87.66 0.57 23.96 16 14 O -0.64 -36.20 15.06 -3.06 -0.05 -36.25 16 15 C -0.06 -2.32 0.53 -51.43 -0.03 -2.34 16 16 C -0.11 -3.87 4.63 31.62 0.15 -3.72 16 17 C -0.12 -3.66 6.90 31.85 0.22 -3.44 16 18 C -0.10 -2.77 6.38 31.61 0.20 -2.57 16 19 C -0.09 -3.06 3.43 -9.30 -0.03 -3.09 16 20 H 0.06 2.66 6.77 -2.39 -0.02 2.64 16 21 C 0.05 1.36 7.02 86.44 0.61 1.97 16 22 N -0.68 -20.89 7.62 -501.22 -3.82 -24.71 16 23 C 0.05 1.88 5.36 86.44 0.46 2.34 16 24 H 0.23 8.51 7.80 -4.42 -0.03 8.47 16 25 H 0.10 5.35 6.23 -2.39 -0.01 5.34 16 26 H 0.05 2.84 7.41 -2.39 -0.02 2.82 16 27 H 0.27 13.16 8.31 -92.70 -0.77 12.39 16 28 H 0.06 2.46 6.14 -2.38 -0.01 2.45 16 29 H 0.09 2.63 7.25 -2.38 -0.02 2.61 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.90 7.25 -2.39 -0.02 1.88 16 33 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.07 1.45 7.25 -2.39 -0.02 1.43 16 36 H 0.35 8.28 8.92 -89.70 -0.80 7.48 16 37 H 0.07 1.91 7.25 -2.39 -0.02 1.90 16 38 H 0.07 2.85 6.52 -2.39 -0.02 2.84 16 Total: -1.00 -64.72 297.33 2.33 -62.39 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.28 Total: 35.69 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.36 Total: -7.68 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -5.29 Total: -94.28 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.05 Total: -36.25 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.14 kcal Total: -64.72 2.33 -62.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702059579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.591 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds