Wall clock time and date at job start Mon Mar 30 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46889 * 117.94204 * 3 2 1 5 5 C 1.37098 * 120.00476 * 264.08599 * 4 3 2 6 6 H 1.07993 * 120.00611 * 142.58917 * 5 4 3 7 7 C 1.38957 * 119.99607 * 322.59875 * 5 4 3 8 8 N 1.31404 * 120.00174 * 157.78048 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 337.76846 * 7 5 4 10 10 H 1.48506 * 109.46732 * 95.81060 * 9 7 5 11 11 H 1.48503 * 109.47268 * 215.80715 * 9 7 5 12 12 H 1.48505 * 109.47446 * 335.81232 * 9 7 5 13 13 C 1.34781 * 120.00078 * 84.08374 * 4 3 2 14 14 O 1.21295 * 119.99889 * 0.02562 * 13 4 3 15 15 C 1.50695 * 120.00027 * 179.97438 * 13 4 3 16 16 C 1.51574 * 111.11678 * 70.42867 * 15 13 4 17 17 C 1.56334 * 101.81832 * 71.48767 * 16 15 13 18 18 C 1.55995 * 105.77521 * 25.42830 * 17 16 15 19 19 C 1.49723 * 103.99167 * 6.93895 * 18 17 16 20 20 H 1.09004 * 108.54897 * 76.85384 * 19 18 17 21 21 C 1.49728 * 127.98042 * 210.27236 * 19 18 17 22 22 N 1.49696 * 104.64314 * 149.17593 * 21 19 18 23 23 C 1.50035 * 107.72415 * 353.60420 * 22 21 19 24 24 H 4.40643 * 5.51368 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47166 * 357.94438 * 3 2 1 26 26 H 1.08999 * 109.47130 * 237.93795 * 3 2 1 27 27 H 0.97004 * 120.00138 * 179.97438 * 8 7 5 28 28 H 1.09003 * 110.95407 * 313.35973 * 16 15 13 29 29 H 1.08994 * 110.96619 * 189.62030 * 16 15 13 30 30 H 1.09001 * 110.19150 * 266.35177 * 17 16 15 31 31 H 1.08999 * 110.18868 * 144.50758 * 17 16 15 32 32 H 1.08995 * 110.53184 * 248.30822 * 18 17 16 33 33 H 1.09007 * 110.52034 * 125.56351 * 18 17 16 34 34 H 1.08996 * 110.40412 * 30.38623 * 21 19 18 35 35 H 1.09003 * 110.50067 * 268.01483 * 21 19 18 36 36 H 1.00900 * 110.99705 * 115.31420 * 22 21 19 37 37 H 1.08994 * 110.81045 * 92.61681 * 23 22 21 38 38 H 1.09006 * 110.80314 * 216.12697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6481 -1.2202 5 6 3.4782 -0.1112 -2.3086 6 1 3.2590 0.2426 -3.3051 7 6 4.1090 -1.3364 -2.1294 8 7 4.0533 -2.2484 -3.0738 9 14 5.0364 -1.6867 -0.5462 10 1 4.1528 -2.4243 0.3921 11 1 6.2358 -2.5091 -0.8467 12 1 5.4577 -0.4051 0.0747 13 6 3.2446 1.9903 -1.2729 14 8 2.9405 2.6622 -0.3099 15 6 3.7471 2.6562 -2.5279 16 6 2.7263 2.5588 -3.6441 17 6 1.6211 3.5504 -3.1547 18 6 2.3480 4.5700 -2.2244 19 6 3.7975 4.2259 -2.3728 20 1 4.1521 4.6211 -3.3248 21 6 4.8889 4.3767 -1.3588 22 7 5.8475 3.2690 -1.6670 23 6 5.2287 2.4125 -2.7321 24 1 -1.0501 0.0000 0.0003 25 1 3.0098 -1.0261 0.0369 26 1 3.0091 0.5463 0.8709 27 1 4.4940 -3.1035 -2.9490 28 1 2.3328 1.5455 -3.7251 29 1 3.1524 2.8869 -4.5921 30 1 0.8538 3.0132 -2.5972 31 1 1.1765 4.0675 -4.0050 32 1 2.0281 4.4396 -1.1906 33 1 2.1616 5.5911 -2.5572 34 1 4.4894 4.2641 -0.3510 35 1 5.3790 5.3444 -1.4666 36 1 6.7378 3.6351 -1.9693 37 1 5.5421 2.7403 -3.7232 38 1 5.4736 1.3620 -2.5750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702059581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:11 Heat of formation + Delta-G solvation = 59.172688 kcal Electronic energy + Delta-G solvation = -21349.474924 eV Core-core repulsion = 18387.678784 eV Total energy + Delta-G solvation = -2961.796140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83025 -37.53900 -35.02124 -34.32452 -32.65844 -31.68876 -29.96127 -27.68916 -26.59769 -25.64935 -24.87657 -21.43302 -21.30285 -19.44895 -18.51583 -18.20778 -16.57295 -15.85456 -15.67896 -15.48656 -14.83452 -14.34543 -13.96193 -13.86499 -13.19215 -13.02236 -12.81716 -12.45943 -12.18935 -12.05980 -11.83109 -11.66492 -11.15880 -11.02604 -10.99597 -10.80929 -10.46633 -10.26922 -10.10083 -9.97529 -9.67684 -9.50321 -9.37844 -9.16577 -8.38195 -7.97799 -7.87461 -6.49513 -4.08510 3.03457 3.21506 3.31502 3.34319 3.55535 3.77693 4.12442 4.34033 4.64258 4.70145 4.87162 5.15638 5.17214 5.34434 5.52173 5.58390 5.72703 5.81576 5.92711 6.02632 6.06983 6.10444 6.19266 6.23591 6.32988 6.43047 6.48439 6.56439 6.57383 6.68253 6.78275 6.82961 6.96117 7.17465 7.31206 7.78075 8.06618 8.24376 8.29687 8.95016 9.34447 9.68811 10.60242 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.010289 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.630135 B = 2720.798901 C = 3239.238889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.159 4.159 3 C 0.202 3.798 4 N -0.460 5.460 5 C -0.346 4.346 6 H 0.113 0.887 7 C 0.069 3.931 8 N -0.856 5.856 9 Si 0.860 3.140 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.251 1.251 13 C 0.524 3.476 14 O -0.582 6.582 15 C -0.071 4.071 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.103 4.103 19 C -0.111 4.111 20 H 0.055 0.945 21 C 0.060 3.940 22 N -0.679 5.679 23 C 0.064 3.936 24 H 0.211 0.789 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.275 0.725 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.328 0.672 37 H 0.043 0.957 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 8.231 -0.167 8.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.160 4.160 3 C 0.080 3.920 4 N -0.181 5.181 5 C -0.472 4.472 6 H 0.130 0.870 7 C -0.139 4.139 8 N -0.491 5.491 9 Si 0.686 3.314 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.175 1.175 13 C 0.313 3.687 14 O -0.465 6.465 15 C -0.075 4.075 16 C -0.145 4.145 17 C -0.158 4.158 18 C -0.141 4.141 19 C -0.131 4.131 20 H 0.074 0.926 21 C -0.068 4.068 22 N -0.307 5.307 23 C -0.064 4.064 24 H 0.228 0.772 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.061 0.939 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.618 7.933 0.788 7.996 hybrid contribution 0.426 0.004 -0.316 0.531 sum -0.192 7.937 0.471 7.953 Atomic orbital electron populations 1.24619 0.95591 1.03028 1.02002 1.23784 0.94910 0.98424 0.98906 1.18667 0.83795 0.98803 0.90755 1.43591 1.56978 1.04660 1.12830 1.19234 1.39228 1.01671 0.87103 0.86990 1.25324 0.95927 0.95311 0.97306 1.69765 1.39777 1.04894 1.34690 0.87179 0.80334 0.79828 0.84023 1.20209 1.21164 1.17472 1.19593 0.78994 0.82074 0.88044 1.90473 1.54213 1.63923 1.37908 1.21526 0.95434 0.94902 0.95628 1.22066 0.95237 1.01096 0.96075 1.22943 0.98106 0.96447 0.98307 1.21385 0.93540 0.97318 1.01840 1.21882 0.96205 0.96081 0.98956 0.92646 1.21862 0.92068 0.91904 1.00950 1.63479 1.05005 1.19805 1.42363 1.22375 0.91723 1.00157 0.92191 0.77246 0.89233 0.89280 0.91478 0.89151 0.91542 0.91845 0.92336 0.89523 0.92910 0.88898 0.93714 0.85858 0.93890 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.48 19.25 29.55 0.57 -3.91 16 2 C -0.16 -3.50 13.62 -37.12 -0.51 -4.01 16 3 C 0.20 4.66 4.43 -6.83 -0.03 4.63 16 4 N -0.46 -10.99 2.16 -117.94 -0.25 -11.25 16 5 C -0.35 -8.66 7.30 -14.93 -0.11 -8.77 16 6 H 0.11 2.89 5.22 -52.49 -0.27 2.61 16 7 C 0.07 1.77 5.27 -17.47 -0.09 1.68 16 8 N -0.86 -22.99 13.96 55.50 0.77 -22.22 16 9 Si 0.86 19.91 25.02 -169.99 -4.25 15.66 16 10 H -0.28 -6.19 6.70 56.52 0.38 -5.81 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.25 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.52 11.90 5.24 -10.99 -0.06 11.84 16 14 O -0.58 -14.02 12.36 5.54 0.07 -13.95 16 15 C -0.07 -1.38 0.30 -154.49 -0.05 -1.43 16 16 C -0.11 -1.92 5.66 -25.66 -0.15 -2.06 16 17 C -0.12 -1.99 6.52 -23.34 -0.15 -2.14 16 18 C -0.10 -1.70 6.17 -26.75 -0.17 -1.86 16 19 C -0.11 -1.89 2.26 -91.23 -0.21 -2.09 16 20 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 21 C 0.06 1.03 6.89 -3.88 -0.03 1.00 16 22 N -0.68 -11.98 7.39 -111.72 -0.83 -12.81 16 23 C 0.06 1.19 6.59 -2.81 -0.02 1.17 16 24 H 0.21 3.03 7.80 -54.08 -0.42 2.60 16 25 H 0.09 2.08 3.57 -51.93 -0.19 1.90 16 26 H 0.09 2.00 7.61 -51.93 -0.39 1.61 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 28 H 0.09 1.83 5.68 -51.93 -0.29 1.53 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.63 6.50 -51.93 -0.34 1.30 16 33 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.09 1.83 6.64 -51.93 -0.34 1.49 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.33 4.77 8.94 -39.29 -0.35 4.42 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 2.27 6.70 -51.93 -0.35 1.92 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -28.52 295.04 -6.09 -34.61 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.06 Total: 11.46 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.99 Total: -5.96 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.31 Total: -46.27 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.07 Total: -13.95 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.25 Total: 15.66 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.52 -6.09 -34.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702059581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.782 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds