Wall clock time and date at job start Mon Mar 30 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46889 * 117.94204 * 3 2 1 5 5 C 1.37098 * 120.00476 * 264.08599 * 4 3 2 6 6 H 1.07993 * 120.00611 * 142.58917 * 5 4 3 7 7 C 1.38957 * 119.99607 * 322.59875 * 5 4 3 8 8 N 1.31404 * 120.00174 * 157.78048 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 337.76846 * 7 5 4 10 10 H 1.48506 * 109.46732 * 95.81060 * 9 7 5 11 11 H 1.48503 * 109.47268 * 215.80715 * 9 7 5 12 12 H 1.48505 * 109.47446 * 335.81232 * 9 7 5 13 13 C 1.34781 * 120.00078 * 84.08374 * 4 3 2 14 14 O 1.21295 * 119.99889 * 0.02562 * 13 4 3 15 15 C 1.50695 * 120.00027 * 179.97438 * 13 4 3 16 16 C 1.51574 * 111.11678 * 70.42867 * 15 13 4 17 17 C 1.56334 * 101.81832 * 71.48767 * 16 15 13 18 18 C 1.55995 * 105.77521 * 25.42830 * 17 16 15 19 19 C 1.49723 * 103.99167 * 6.93895 * 18 17 16 20 20 H 1.09004 * 108.54897 * 76.85384 * 19 18 17 21 21 C 1.49728 * 127.98042 * 210.27236 * 19 18 17 22 22 N 1.49696 * 104.64314 * 149.17593 * 21 19 18 23 23 C 1.50035 * 107.72415 * 353.60420 * 22 21 19 24 24 H 4.40643 * 5.51368 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47166 * 357.94438 * 3 2 1 26 26 H 1.08999 * 109.47130 * 237.93795 * 3 2 1 27 27 H 0.97004 * 120.00138 * 179.97438 * 8 7 5 28 28 H 1.09003 * 110.95407 * 313.35973 * 16 15 13 29 29 H 1.08994 * 110.96619 * 189.62030 * 16 15 13 30 30 H 1.09001 * 110.19150 * 266.35177 * 17 16 15 31 31 H 1.08999 * 110.18868 * 144.50758 * 17 16 15 32 32 H 1.08995 * 110.53184 * 248.30822 * 18 17 16 33 33 H 1.09007 * 110.52034 * 125.56351 * 18 17 16 34 34 H 1.08996 * 110.40412 * 30.38623 * 21 19 18 35 35 H 1.09003 * 110.50067 * 268.01483 * 21 19 18 36 36 H 1.00900 * 110.99705 * 115.31420 * 22 21 19 37 37 H 1.08994 * 110.81045 * 92.61681 * 23 22 21 38 38 H 1.09006 * 110.80314 * 216.12697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6481 -1.2202 5 6 3.4782 -0.1112 -2.3086 6 1 3.2590 0.2426 -3.3051 7 6 4.1090 -1.3364 -2.1294 8 7 4.0533 -2.2484 -3.0738 9 14 5.0364 -1.6867 -0.5462 10 1 4.1528 -2.4243 0.3921 11 1 6.2358 -2.5091 -0.8467 12 1 5.4577 -0.4051 0.0747 13 6 3.2446 1.9903 -1.2729 14 8 2.9405 2.6622 -0.3099 15 6 3.7471 2.6562 -2.5279 16 6 2.7263 2.5588 -3.6441 17 6 1.6211 3.5504 -3.1547 18 6 2.3480 4.5700 -2.2244 19 6 3.7975 4.2259 -2.3728 20 1 4.1521 4.6211 -3.3248 21 6 4.8889 4.3767 -1.3588 22 7 5.8475 3.2690 -1.6670 23 6 5.2287 2.4125 -2.7321 24 1 -1.0501 0.0000 0.0003 25 1 3.0098 -1.0261 0.0369 26 1 3.0091 0.5463 0.8709 27 1 4.4940 -3.1035 -2.9490 28 1 2.3328 1.5455 -3.7251 29 1 3.1524 2.8869 -4.5921 30 1 0.8538 3.0132 -2.5972 31 1 1.1765 4.0675 -4.0050 32 1 2.0281 4.4396 -1.1906 33 1 2.1616 5.5911 -2.5572 34 1 4.4894 4.2641 -0.3510 35 1 5.3790 5.3444 -1.4666 36 1 6.7378 3.6351 -1.9693 37 1 5.5421 2.7403 -3.7232 38 1 5.4736 1.3620 -2.5750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702059581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:11 Heat of formation + Delta-G solvation = 39.765196 kcal Electronic energy + Delta-G solvation = -21350.316496 eV Core-core repulsion = 18387.678784 eV Total energy + Delta-G solvation = -2962.637712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.35998 -39.22541 -36.85832 -35.69785 -34.43820 -33.50880 -31.41198 -29.12286 -28.29273 -27.02251 -26.78018 -23.01702 -22.71286 -20.88656 -20.32863 -19.80999 -18.26288 -17.50405 -17.28200 -17.04540 -16.47979 -15.95570 -15.58773 -15.38619 -14.93797 -14.76297 -14.38139 -14.07011 -13.83957 -13.56946 -13.31365 -13.28156 -12.80784 -12.70596 -12.53056 -12.31472 -12.14772 -11.77516 -11.63026 -11.51494 -11.20211 -11.17415 -10.99292 -10.90001 -10.14859 -9.77842 -9.33084 -8.48227 -6.06807 1.16178 1.30744 1.44405 1.66144 1.90928 2.00495 2.19739 2.78409 2.97227 3.18050 3.28750 3.58681 3.75712 4.01182 4.14987 4.18251 4.26606 4.29335 4.41722 4.48363 4.63269 4.68409 4.73049 4.85699 4.93157 5.01368 5.04830 5.14602 5.17533 5.27555 5.29704 5.41123 5.43496 5.62307 5.78610 6.15211 6.29600 6.59062 6.68745 7.00521 7.47142 7.84778 8.64876 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.010289 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.630135 B = 2720.798901 C = 3239.238889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.227 4.227 3 C 0.200 3.800 4 N -0.473 5.473 5 C -0.333 4.333 6 H 0.101 0.899 7 C 0.036 3.964 8 N -0.892 5.892 9 Si 0.905 3.095 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.265 1.265 13 C 0.519 3.481 14 O -0.600 6.600 15 C -0.085 4.085 16 C -0.104 4.104 17 C -0.115 4.115 18 C -0.100 4.100 19 C -0.103 4.103 20 H 0.084 0.916 21 C 0.063 3.937 22 N -0.696 5.696 23 C 0.067 3.933 24 H 0.258 0.742 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.278 0.722 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.346 0.654 37 H 0.072 0.928 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 10.082 -0.912 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.229 4.229 3 C 0.078 3.922 4 N -0.194 5.194 5 C -0.460 4.460 6 H 0.119 0.881 7 C -0.169 4.169 8 N -0.529 5.529 9 Si 0.731 3.269 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.310 3.690 14 O -0.484 6.484 15 C -0.089 4.089 16 C -0.142 4.142 17 C -0.153 4.153 18 C -0.138 4.138 19 C -0.122 4.122 20 H 0.102 0.898 21 C -0.065 4.065 22 N -0.326 5.326 23 C -0.061 4.061 24 H 0.274 0.726 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.163 0.837 37 H 0.091 0.909 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.055 9.787 0.054 9.844 hybrid contribution 0.480 -0.498 -0.039 0.692 sum -0.575 9.290 0.014 9.308 Atomic orbital electron populations 1.25672 0.96462 0.99719 0.98737 1.23917 0.95501 1.01495 1.01951 1.18539 0.85223 0.98150 0.90312 1.43746 1.57655 1.05233 1.12744 1.19164 1.38238 1.01414 0.87157 0.88129 1.25718 0.96585 0.95418 0.99152 1.69811 1.41385 1.05506 1.36183 0.86467 0.79606 0.79004 0.81839 1.19298 1.20752 1.18913 1.20270 0.78024 0.81597 0.89094 1.90458 1.54752 1.64109 1.39059 1.21634 0.95885 0.96909 0.94434 1.22054 0.95311 0.99952 0.96914 1.22914 0.97088 0.96108 0.99159 1.21359 0.93153 0.99111 1.00143 1.21943 0.96509 0.93611 1.00160 0.89818 1.21779 0.92328 0.93202 0.99168 1.63287 1.06160 1.20526 1.42603 1.22243 0.91395 0.98624 0.93867 0.72636 0.90041 0.89914 0.91215 0.92244 0.88731 0.94368 0.89005 0.92587 0.89501 0.92298 0.90114 0.83747 0.90945 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.87 19.25 74.32 1.43 -5.44 16 2 C -0.23 -10.07 13.62 31.12 0.42 -9.65 16 3 C 0.20 9.49 4.43 84.57 0.37 9.87 16 4 N -0.47 -23.18 2.16 -645.43 -1.39 -24.58 16 5 C -0.33 -17.12 7.30 84.04 0.61 -16.51 16 6 H 0.10 5.35 5.22 -2.91 -0.02 5.34 16 7 C 0.04 1.87 5.27 84.93 0.45 2.31 16 8 N -0.89 -48.89 13.96 21.66 0.30 -48.59 16 9 Si 0.90 42.19 25.02 68.60 1.72 43.90 16 10 H -0.27 -11.92 6.70 99.48 0.67 -11.25 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 13 C 0.52 23.96 5.24 87.65 0.46 24.42 16 14 O -0.60 -29.49 12.36 -3.08 -0.04 -29.53 16 15 C -0.09 -3.22 0.30 -52.17 -0.02 -3.23 16 16 C -0.10 -3.59 5.66 31.29 0.18 -3.42 16 17 C -0.12 -3.56 6.52 32.79 0.21 -3.35 16 18 C -0.10 -3.04 6.17 30.58 0.19 -2.85 16 19 C -0.10 -3.19 2.26 -11.19 -0.03 -3.21 16 20 H 0.08 2.18 7.94 -2.38 -0.02 2.17 16 21 C 0.06 2.02 6.89 84.71 0.58 2.61 16 22 N -0.70 -23.54 7.39 -507.37 -3.75 -27.29 16 23 C 0.07 2.43 6.59 85.21 0.56 3.00 16 24 H 0.26 6.37 7.80 -4.41 -0.03 6.34 16 25 H 0.08 3.90 3.57 -2.39 -0.01 3.89 16 26 H 0.08 3.89 7.61 -2.39 -0.02 3.87 16 27 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.06 2.42 5.68 -2.39 -0.01 2.41 16 29 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 2.07 6.50 -2.39 -0.02 2.05 16 33 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.06 2.30 6.64 -2.39 -0.02 2.28 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.35 9.29 8.94 -89.69 -0.80 8.49 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.07 3.06 6.70 -2.38 -0.02 3.05 16 Total: -1.00 -63.65 295.04 2.51 -61.14 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.24 Total: 30.40 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.43 Total: -5.45 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.84 Total: -100.45 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.04 Total: -29.53 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.72 Total: 43.90 kcal Total: -63.65 2.51 -61.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702059581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.904 kcal (2) G-P(sol) polarization free energy of solvation -63.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds